Wall clock time and date at job start Wed Apr 1 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 H 1.08994 * 109.46955 * 56.24486 * 3 2 1 5 5 O 1.42899 * 109.47067 * 296.24611 * 3 2 1 6 6 C 1.42897 * 114.00201 * 152.92299 * 5 3 2 7 7 H 1.09002 * 109.46603 * 30.83505 * 6 5 3 8 8 C 1.52993 * 109.47651 * 270.83403 * 6 5 3 9 9 C 1.53007 * 109.46952 * 299.99919 * 8 6 5 10 10 C 1.52999 * 109.47162 * 299.99768 * 9 8 6 11 11 C 1.53005 * 109.46842 * 59.99793 * 10 9 8 12 12 H 1.09003 * 109.46911 * 60.00169 * 11 10 9 13 13 C 1.52999 * 109.46842 * 179.97438 * 11 10 9 14 14 C 1.52993 * 109.47506 * 300.00150 * 11 10 9 15 15 C 1.50702 * 109.46774 * 176.24719 * 3 2 1 16 16 O 1.21281 * 119.99372 * 120.00419 * 15 3 2 17 17 N 1.34770 * 120.00005 * 299.99463 * 15 3 2 18 18 S 1.65604 * 119.99864 * 180.02562 * 17 15 3 19 19 O 1.42102 * 104.27414 * 308.92956 * 18 17 15 20 20 O 1.42098 * 104.27398 * 181.07553 * 18 17 15 21 21 C 1.81397 * 104.44980 * 65.00190 * 18 17 15 22 22 C 1.50697 * 109.47030 * 180.02562 * 21 18 17 23 23 H 1.07997 * 119.99984 * 359.97438 * 22 21 18 24 24 C 1.37880 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31520 * 119.99930 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00087 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47654 * 59.99482 * 26 24 22 28 28 H 1.48504 * 109.47425 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47027 * 299.99287 * 26 24 22 30 30 H 1.08997 * 109.47627 * 299.07579 * 1 2 3 31 31 H 1.09008 * 109.47219 * 59.07783 * 1 2 3 32 32 H 1.09008 * 109.47283 * 179.06976 * 1 2 3 33 33 H 1.08997 * 109.46988 * 239.99843 * 2 1 3 34 34 H 1.09005 * 109.46546 * 119.99934 * 2 1 3 35 35 H 1.09001 * 109.47417 * 59.99168 * 8 6 5 36 36 H 1.08994 * 109.47436 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47027 * 59.99777 * 9 8 6 38 38 H 1.08998 * 109.46950 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.47137 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.46801 * 300.00472 * 10 9 8 41 41 H 1.09003 * 109.47230 * 60.00364 * 13 11 10 42 42 H 1.09000 * 109.47165 * 180.02562 * 13 11 10 43 43 H 1.09000 * 109.47441 * 300.00048 * 13 11 10 44 44 H 1.09002 * 109.47522 * 300.00169 * 14 11 10 45 45 H 1.09000 * 109.47344 * 180.02562 * 14 11 10 46 46 H 0.96999 * 119.99947 * 0.02562 * 17 15 3 47 47 H 1.09001 * 109.47436 * 300.00329 * 21 18 17 48 48 H 1.09006 * 109.47122 * 60.00209 * 21 18 17 49 49 H 0.97000 * 119.99724 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9753 0.8544 5 8 1.6370 2.0902 -1.2084 6 6 1.4975 3.5074 -1.0896 7 1 2.2013 3.8806 -0.3457 8 6 0.0698 3.8447 -0.6554 9 6 -0.9182 3.3207 -1.6997 10 6 -0.6276 3.9768 -3.0510 11 6 0.8002 3.6395 -3.4852 12 1 0.9066 2.5584 -3.5757 13 6 1.0905 4.2950 -4.8368 14 6 1.7881 4.1634 -2.4410 15 6 3.5441 1.4434 0.0930 16 8 4.2058 1.9491 -0.7887 17 7 4.1539 0.8826 1.1560 18 16 5.8068 0.8842 1.2584 19 8 6.2358 0.3616 0.0086 20 8 6.0832 0.1994 2.4725 21 6 6.2497 2.6374 1.4013 22 6 7.7474 2.7705 1.5022 23 1 8.3704 1.8885 1.4827 24 6 8.3222 4.0182 1.6203 25 7 7.5634 5.0921 1.6445 26 14 10.1787 4.1832 1.7446 27 1 10.8092 3.6116 0.5278 28 1 10.5414 5.6185 1.8617 29 1 10.6616 3.4510 2.9429 30 1 -0.3634 0.4994 0.8981 31 1 -0.3634 0.5281 -0.8817 32 1 -0.3634 -1.0276 -0.0167 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8901 35 1 -0.1373 3.3773 0.3073 36 1 -0.0365 4.9257 -0.5644 37 1 -0.8117 2.2398 -1.7902 38 1 -1.9353 3.5615 -1.3905 39 1 -1.3311 3.6032 -3.7950 40 1 -0.7340 5.0578 -2.9603 41 1 0.9840 5.3761 -4.7466 42 1 2.1076 4.0544 -5.1463 43 1 0.3868 3.9213 -5.5805 44 1 1.6818 5.2444 -2.3503 45 1 2.8053 3.9235 -2.7505 46 1 3.6246 0.4780 1.8610 47 1 5.8960 3.1744 0.5212 48 1 5.7863 3.0577 2.2939 49 1 7.9679 5.9699 1.7272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:12 Heat of formation + Delta-G solvation = -194.165148 kcal Electronic energy + Delta-G solvation = -30556.059251 eV Core-core repulsion = 26416.110944 eV Total energy + Delta-G solvation = -4139.948307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.45817 -39.05343 -36.69205 -36.20115 -35.18678 -34.47769 -33.37954 -33.26534 -32.31955 -30.02418 -29.08384 -27.51502 -26.49405 -23.57865 -22.76270 -22.53446 -21.47645 -21.03800 -19.73890 -19.19950 -17.88544 -17.27958 -16.74322 -16.22090 -15.98524 -15.64044 -15.24033 -14.95337 -14.76456 -14.49604 -14.39782 -14.19462 -14.11854 -13.81823 -13.34571 -12.94509 -12.61332 -12.55247 -12.38363 -12.27063 -12.11838 -11.97866 -11.91809 -11.89270 -11.63059 -11.49451 -11.41985 -11.30432 -11.20951 -11.08971 -10.97506 -10.89990 -10.77225 -10.67231 -10.50339 -10.45579 -10.04911 -10.02021 -9.88031 -9.29522 -9.13507 -8.71932 -6.35082 -4.46305 1.01355 2.32720 3.10817 3.23425 3.25667 3.30492 3.52619 4.18889 4.29278 4.52468 4.59067 4.62345 4.67976 4.71699 4.76630 4.96597 5.01266 5.04838 5.08021 5.14575 5.22320 5.22735 5.29293 5.37930 5.44264 5.47970 5.54402 5.59533 5.69614 5.71777 5.77068 5.79282 5.90370 5.91788 5.93405 6.01379 6.13592 6.22091 6.23768 6.35881 6.47063 6.54247 6.71967 6.91255 7.11076 7.39579 7.70842 7.78429 8.54457 9.21150 10.76689 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003426 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.608449 B = 8170.296260 C = 9628.379467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.074 3.926 4 H 0.094 0.906 5 O -0.339 6.339 6 C 0.087 3.913 7 H 0.064 0.936 8 C -0.141 4.141 9 C -0.114 4.114 10 C -0.113 4.113 11 C -0.088 4.088 12 H 0.079 0.921 13 C -0.148 4.148 14 C -0.109 4.109 15 C 0.505 3.495 16 O -0.469 6.469 17 N -1.060 6.060 18 S 2.552 3.448 19 O -0.952 6.952 20 O -0.969 6.969 21 C -0.403 4.403 22 C -0.536 4.536 23 H 0.070 0.930 24 C 0.078 3.922 25 N -0.877 5.877 26 Si 0.907 3.093 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.423 0.577 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.609 -2.669 -4.212 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.010 3.990 4 H 0.111 0.889 5 O -0.256 6.256 6 C 0.029 3.971 7 H 0.083 0.917 8 C -0.179 4.179 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.107 4.107 12 H 0.097 0.903 13 C -0.205 4.205 14 C -0.147 4.147 15 C 0.289 3.711 16 O -0.338 6.338 17 N -0.822 5.822 18 S 2.654 3.346 19 O -0.942 6.942 20 O -0.960 6.960 21 C -0.540 4.540 22 C -0.575 4.575 23 H 0.088 0.912 24 C -0.128 4.128 25 N -0.513 5.513 26 Si 0.732 3.268 27 H -0.193 1.193 28 H -0.206 1.206 29 H -0.194 1.194 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.257 0.743 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.687 -2.998 -5.118 20.561 hybrid contribution 0.539 0.751 0.866 1.267 sum -19.148 -2.246 -4.252 19.742 Atomic orbital electron populations 1.21756 0.94205 1.02022 1.02575 1.21596 0.97468 0.92663 1.03917 1.22203 0.89519 0.96702 0.90563 0.88874 1.88031 1.86908 1.19691 1.31009 1.22202 0.95387 0.80978 0.98540 0.91741 1.22064 0.95560 1.01432 0.98838 1.21455 0.97789 1.01223 0.94689 1.21591 0.96481 1.00234 0.96701 1.21049 0.94190 1.01186 0.94231 0.90305 1.21838 1.01585 1.00389 0.96695 1.21660 1.00591 0.99168 0.93241 1.21417 0.92597 0.76526 0.80565 1.90915 1.66277 1.40417 1.36236 1.55559 1.31243 1.65706 1.29643 1.07167 0.71676 0.81609 0.74137 1.93534 1.78050 1.79051 1.43545 1.93518 1.81481 1.74017 1.47005 1.27593 1.06629 1.12570 1.07228 1.20245 0.87318 0.94461 1.55505 0.91188 1.24914 0.99485 0.95075 0.93376 1.69944 1.36028 0.98327 1.47014 0.86401 0.83397 0.77488 0.79502 1.19330 1.20638 1.19378 0.92704 0.91400 0.92311 0.90032 0.90034 0.91961 0.91032 0.91053 0.92561 0.92354 0.92389 0.92992 0.92521 0.93022 0.90926 0.90376 0.74300 0.88478 0.89798 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.81 37.16 0.36 -0.75 16 2 C -0.12 -1.13 5.58 -26.73 -0.15 -1.28 16 3 C 0.07 0.87 2.34 -27.88 -0.07 0.81 16 4 H 0.09 0.86 7.54 -51.93 -0.39 0.47 16 5 O -0.34 -4.33 7.33 -55.14 -0.40 -4.73 16 6 C 0.09 1.03 2.56 -26.73 -0.07 0.96 16 7 H 0.06 0.85 7.74 -51.93 -0.40 0.44 16 8 C -0.14 -1.29 5.60 -26.73 -0.15 -1.44 16 9 C -0.11 -0.97 5.78 -26.73 -0.15 -1.12 16 10 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 11 C -0.09 -0.92 2.57 -90.62 -0.23 -1.15 16 12 H 0.08 0.93 7.68 -51.93 -0.40 0.54 16 13 C -0.15 -1.42 9.19 37.16 0.34 -1.07 16 14 C -0.11 -1.31 4.95 -26.73 -0.13 -1.44 16 15 C 0.50 8.30 6.79 -10.99 -0.07 8.23 16 16 O -0.47 -9.85 14.48 -22.96 -0.33 -10.19 16 17 N -1.06 -16.77 5.47 31.22 0.17 -16.60 16 18 S 2.55 55.46 5.03 -107.50 -0.54 54.92 16 19 O -0.95 -23.93 17.04 -64.79 -1.10 -25.03 16 20 O -0.97 -22.10 18.08 -57.54 -1.04 -23.14 16 21 C -0.40 -10.04 5.64 36.00 0.20 -9.83 16 22 C -0.54 -15.07 9.13 -34.44 -0.31 -15.38 16 23 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 24 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 25 N -0.88 -24.97 13.29 55.43 0.74 -24.24 16 26 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.55 6.21 -51.92 -0.32 0.23 16 32 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.63 7.46 -51.93 -0.39 0.24 16 35 H 0.06 0.51 7.83 -51.93 -0.41 0.10 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.64 6.13 -51.93 -0.32 0.32 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.42 4.72 8.16 -34.48 -0.28 4.44 16 47 H 0.10 2.53 7.19 -51.92 -0.37 2.16 16 48 H 0.08 2.00 8.14 -51.92 -0.42 1.58 16 49 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -35.51 399.98 -10.49 -46.01 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -8.32 Total: 3.35 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.67 Total: -22.50 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.91 Total: -40.83 kcal Atomic # 8 Polarization: -60.21 SS G_CDS: -2.88 Total: -63.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.54 Total: 54.92 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.51 -10.49 -46.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.159 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds