Wall clock time and date at job start Wed Apr 1 2020 04:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 H 1.08994 * 109.46955 * 56.24486 * 3 2 1 5 5 O 1.42899 * 109.47067 * 296.24611 * 3 2 1 6 6 C 1.42897 * 114.00201 * 152.92299 * 5 3 2 7 7 H 1.09002 * 109.46603 * 30.83505 * 6 5 3 8 8 C 1.52993 * 109.47651 * 270.83403 * 6 5 3 9 9 C 1.53007 * 109.46952 * 299.99919 * 8 6 5 10 10 C 1.52999 * 109.47162 * 299.99768 * 9 8 6 11 11 C 1.53005 * 109.46842 * 59.99793 * 10 9 8 12 12 H 1.09003 * 109.46911 * 60.00169 * 11 10 9 13 13 C 1.52999 * 109.46842 * 179.97438 * 11 10 9 14 14 C 1.52993 * 109.47506 * 300.00150 * 11 10 9 15 15 C 1.50702 * 109.46774 * 176.24719 * 3 2 1 16 16 O 1.21281 * 119.99372 * 120.00419 * 15 3 2 17 17 N 1.34770 * 120.00005 * 299.99463 * 15 3 2 18 18 S 1.65604 * 119.99864 * 180.02562 * 17 15 3 19 19 O 1.42102 * 104.27414 * 308.92956 * 18 17 15 20 20 O 1.42098 * 104.27398 * 181.07553 * 18 17 15 21 21 C 1.81397 * 104.44980 * 65.00190 * 18 17 15 22 22 C 1.50697 * 109.47030 * 180.02562 * 21 18 17 23 23 H 1.07997 * 119.99984 * 359.97438 * 22 21 18 24 24 C 1.37880 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31520 * 119.99930 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00087 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47654 * 59.99482 * 26 24 22 28 28 H 1.48504 * 109.47425 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47027 * 299.99287 * 26 24 22 30 30 H 1.08997 * 109.47627 * 299.07579 * 1 2 3 31 31 H 1.09008 * 109.47219 * 59.07783 * 1 2 3 32 32 H 1.09008 * 109.47283 * 179.06976 * 1 2 3 33 33 H 1.08997 * 109.46988 * 239.99843 * 2 1 3 34 34 H 1.09005 * 109.46546 * 119.99934 * 2 1 3 35 35 H 1.09001 * 109.47417 * 59.99168 * 8 6 5 36 36 H 1.08994 * 109.47436 * 179.97438 * 8 6 5 37 37 H 1.08994 * 109.47027 * 59.99777 * 9 8 6 38 38 H 1.08998 * 109.46950 * 180.02562 * 9 8 6 39 39 H 1.08992 * 109.47137 * 179.97438 * 10 9 8 40 40 H 1.09002 * 109.46801 * 300.00472 * 10 9 8 41 41 H 1.09003 * 109.47230 * 60.00364 * 13 11 10 42 42 H 1.09000 * 109.47165 * 180.02562 * 13 11 10 43 43 H 1.09000 * 109.47441 * 300.00048 * 13 11 10 44 44 H 1.09002 * 109.47522 * 300.00169 * 14 11 10 45 45 H 1.09000 * 109.47344 * 180.02562 * 14 11 10 46 46 H 0.96999 * 119.99947 * 0.02562 * 17 15 3 47 47 H 1.09001 * 109.47436 * 300.00329 * 21 18 17 48 48 H 1.09006 * 109.47122 * 60.00209 * 21 18 17 49 49 H 0.97000 * 119.99724 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6227 1.9753 0.8544 5 8 1.6370 2.0902 -1.2084 6 6 1.4975 3.5074 -1.0896 7 1 2.2013 3.8806 -0.3457 8 6 0.0698 3.8447 -0.6554 9 6 -0.9182 3.3207 -1.6997 10 6 -0.6276 3.9768 -3.0510 11 6 0.8002 3.6395 -3.4852 12 1 0.9066 2.5584 -3.5757 13 6 1.0905 4.2950 -4.8368 14 6 1.7881 4.1634 -2.4410 15 6 3.5441 1.4434 0.0930 16 8 4.2058 1.9491 -0.7887 17 7 4.1539 0.8826 1.1560 18 16 5.8068 0.8842 1.2584 19 8 6.2358 0.3616 0.0086 20 8 6.0832 0.1994 2.4725 21 6 6.2497 2.6374 1.4013 22 6 7.7474 2.7705 1.5022 23 1 8.3704 1.8885 1.4827 24 6 8.3222 4.0182 1.6203 25 7 7.5634 5.0921 1.6445 26 14 10.1787 4.1832 1.7446 27 1 10.8092 3.6116 0.5278 28 1 10.5414 5.6185 1.8617 29 1 10.6616 3.4510 2.9429 30 1 -0.3634 0.4994 0.8981 31 1 -0.3634 0.5281 -0.8817 32 1 -0.3634 -1.0276 -0.0167 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8901 35 1 -0.1373 3.3773 0.3073 36 1 -0.0365 4.9257 -0.5644 37 1 -0.8117 2.2398 -1.7902 38 1 -1.9353 3.5615 -1.3905 39 1 -1.3311 3.6032 -3.7950 40 1 -0.7340 5.0578 -2.9603 41 1 0.9840 5.3761 -4.7466 42 1 2.1076 4.0544 -5.1463 43 1 0.3868 3.9213 -5.5805 44 1 1.6818 5.2444 -2.3503 45 1 2.8053 3.9235 -2.7505 46 1 3.6246 0.4780 1.8610 47 1 5.8960 3.1744 0.5212 48 1 5.7863 3.0577 2.2939 49 1 7.9679 5.9699 1.7272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:11 Heat of formation + Delta-G solvation = -218.472898 kcal Electronic energy + Delta-G solvation = -30557.113314 eV Core-core repulsion = 26416.110944 eV Total energy + Delta-G solvation = -4141.002370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67041 -40.10776 -38.17567 -37.55728 -37.09341 -35.84964 -35.46264 -34.19768 -33.08554 -31.14695 -30.86097 -28.47706 -27.28467 -25.65612 -23.74488 -23.39695 -22.35208 -22.06054 -20.95125 -20.49131 -19.41680 -18.91567 -18.44662 -17.54874 -17.41976 -16.80705 -16.72346 -16.26414 -16.21963 -15.89394 -15.71637 -15.29759 -14.90229 -14.60828 -14.54262 -14.23340 -14.16239 -13.82134 -13.59295 -13.52921 -13.36957 -13.24719 -13.18845 -13.13273 -12.99662 -12.77390 -12.75523 -12.69630 -12.58225 -12.47311 -12.17408 -12.04196 -11.97025 -11.88493 -11.72688 -11.60054 -11.27052 -11.14662 -10.97404 -10.87308 -10.81882 -10.31559 -8.46208 -6.65821 -0.78714 0.98015 1.34887 1.39307 1.47134 1.55923 2.27174 2.55221 2.71489 2.87738 3.05236 3.36020 3.72041 3.77890 3.86797 3.88827 3.90395 4.00811 4.21105 4.30260 4.35858 4.41616 4.53015 4.59042 4.60451 4.62531 4.69171 4.73553 4.81261 4.87715 4.89626 4.97060 5.03626 5.11798 5.14875 5.20435 5.24062 5.24776 5.32784 5.38984 5.43913 5.47494 5.55467 5.61744 5.66750 5.72577 6.11923 6.42514 6.49562 7.06112 8.66516 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.003426 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.608449 B = 8170.296260 C = 9628.379467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C 0.079 3.921 4 H 0.130 0.870 5 O -0.349 6.349 6 C 0.080 3.920 7 H 0.044 0.956 8 C -0.134 4.134 9 C -0.111 4.111 10 C -0.109 4.109 11 C -0.084 4.084 12 H 0.060 0.940 13 C -0.147 4.147 14 C -0.112 4.112 15 C 0.499 3.501 16 O -0.520 6.520 17 N -1.039 6.039 18 S 2.595 3.405 19 O -0.987 6.987 20 O -0.977 6.977 21 C -0.419 4.419 22 C -0.572 4.572 23 H 0.067 0.933 24 C 0.027 3.973 25 N -0.906 5.906 26 Si 0.966 3.034 27 H -0.266 1.266 28 H -0.267 1.267 29 H -0.256 1.256 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.447 0.553 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.849 -3.036 -3.150 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C 0.015 3.985 4 H 0.147 0.853 5 O -0.266 6.266 6 C 0.023 3.977 7 H 0.063 0.937 8 C -0.172 4.172 9 C -0.149 4.149 10 C -0.146 4.146 11 C -0.103 4.103 12 H 0.079 0.921 13 C -0.204 4.204 14 C -0.150 4.150 15 C 0.286 3.714 16 O -0.393 6.393 17 N -0.807 5.807 18 S 2.695 3.305 19 O -0.977 6.977 20 O -0.968 6.968 21 C -0.554 4.554 22 C -0.611 4.611 23 H 0.085 0.915 24 C -0.177 4.177 25 N -0.542 5.542 26 Si 0.788 3.212 27 H -0.191 1.191 28 H -0.191 1.191 29 H -0.181 1.181 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.287 0.713 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.943 -3.368 -4.020 22.561 hybrid contribution 1.175 0.855 0.505 1.538 sum -20.769 -2.512 -3.515 21.213 Atomic orbital electron populations 1.21729 0.92105 1.03028 1.03126 1.21718 0.99208 0.90552 1.04224 1.22501 0.85510 0.98857 0.91603 0.85289 1.88040 1.86460 1.20148 1.31948 1.22307 0.97114 0.80573 0.97726 0.93732 1.22027 0.93271 1.02128 0.99760 1.21453 0.98512 1.00831 0.94076 1.21570 0.94903 1.00802 0.97346 1.20994 0.95229 0.99950 0.94094 0.92132 1.21831 1.01006 1.00905 0.96648 1.21672 0.99030 0.99925 0.94340 1.22583 0.94711 0.74754 0.79319 1.90905 1.67636 1.42602 1.38118 1.54987 1.29358 1.65721 1.30649 1.05548 0.72735 0.79207 0.72977 1.93488 1.79996 1.78893 1.45326 1.93498 1.82739 1.73294 1.47244 1.27640 1.05461 1.16027 1.06281 1.20696 0.89186 0.94954 1.56224 0.91477 1.25868 1.04461 0.94688 0.92669 1.70027 1.38023 0.98859 1.47337 0.85481 0.77536 0.78326 0.79881 1.19077 1.19123 1.18062 0.90896 0.92136 0.91071 0.91748 0.87830 0.90356 0.90267 0.91516 0.90548 0.91230 0.91661 0.92185 0.94135 0.91647 0.90012 0.94179 0.71315 0.90647 0.89445 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.81 71.98 0.71 -0.96 16 2 C -0.12 -1.99 5.58 30.59 0.17 -1.82 16 3 C 0.08 1.76 2.34 29.85 0.07 1.83 16 4 H 0.13 1.99 7.54 -2.39 -0.02 1.97 16 5 O -0.35 -8.82 7.33 -129.94 -0.95 -9.77 16 6 C 0.08 1.90 2.56 30.59 0.08 1.98 16 7 H 0.04 1.21 7.74 -2.39 -0.02 1.19 16 8 C -0.13 -2.15 5.60 30.59 0.17 -1.97 16 9 C -0.11 -1.58 5.78 30.60 0.18 -1.40 16 10 C -0.11 -1.68 5.20 30.60 0.16 -1.52 16 11 C -0.08 -1.76 2.57 -10.79 -0.03 -1.78 16 12 H 0.06 1.48 7.68 -2.39 -0.02 1.46 16 13 C -0.15 -2.81 9.19 71.98 0.66 -2.15 16 14 C -0.11 -2.82 4.95 30.59 0.15 -2.67 16 15 C 0.50 16.51 6.79 87.66 0.60 17.11 16 16 O -0.52 -22.96 14.48 24.23 0.35 -22.60 16 17 N -1.04 -32.25 5.47 -173.54 -0.95 -33.20 16 18 S 2.60 114.25 5.03 -56.49 -0.28 113.97 16 19 O -0.99 -50.88 17.04 -120.72 -2.06 -52.94 16 20 O -0.98 -44.04 18.08 -127.65 -2.31 -46.35 16 21 C -0.42 -21.65 5.64 71.23 0.40 -21.25 16 22 C -0.57 -33.06 9.13 25.60 0.23 -32.83 16 23 H 0.07 3.79 7.71 -2.91 -0.02 3.76 16 24 C 0.03 1.52 5.46 84.65 0.46 1.98 16 25 N -0.91 -52.66 13.29 21.45 0.28 -52.37 16 26 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.82 6.21 -2.38 -0.01 0.80 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.26 7.46 -2.38 -0.02 1.24 16 35 H 0.08 1.01 7.83 -2.39 -0.02 0.99 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.04 6.13 -2.39 -0.01 1.02 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.45 9.02 8.16 -96.74 -0.79 8.23 16 47 H 0.08 4.18 7.19 -2.39 -0.02 4.16 16 48 H 0.09 4.32 8.14 -2.39 -0.02 4.30 16 49 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -79.91 399.98 0.27 -79.64 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.15 Total: 23.63 kcal Atomic # 6 Polarization: -49.47 SS G_CDS: 4.01 Total: -45.46 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -0.67 Total: -85.58 kcal Atomic # 8 Polarization: -126.70 SS G_CDS: -4.97 Total: -131.66 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 114.25 SS G_CDS: -0.28 Total: 113.97 kcal Total: -79.91 0.27 -79.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.833 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds