Wall clock time and date at job start Wed Apr 1 2020 04:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46670 * 2 1 4 4 H 1.08994 * 109.47267 * 54.73348 * 3 2 1 5 5 O 1.42900 * 109.47328 * 294.72982 * 3 2 1 6 6 C 1.42898 * 114.00138 * 151.59098 * 5 3 2 7 7 H 1.08990 * 109.47248 * 32.64007 * 6 5 3 8 8 C 1.53005 * 109.47112 * 272.64356 * 6 5 3 9 9 C 1.52995 * 109.47253 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47000 * 60.00084 * 9 8 6 11 11 C 1.52994 * 109.47373 * 300.00088 * 10 9 8 12 12 H 1.09006 * 109.46954 * 300.00228 * 11 10 9 13 13 C 1.52998 * 109.47373 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47472 * 60.00048 * 11 10 9 15 15 C 1.50703 * 109.47124 * 174.73530 * 3 2 1 16 16 O 1.21276 * 120.00347 * 119.99737 * 15 3 2 17 17 N 1.34782 * 119.99495 * 299.99836 * 15 3 2 18 18 S 1.65594 * 119.99789 * 180.02562 * 17 15 3 19 19 O 1.42097 * 104.27928 * 181.07158 * 18 17 15 20 20 O 1.42102 * 104.27808 * 308.92564 * 18 17 15 21 21 C 1.81401 * 104.45088 * 65.00094 * 18 17 15 22 22 C 1.50700 * 109.47118 * 180.02562 * 21 18 17 23 23 H 1.08001 * 120.00081 * 359.97438 * 22 21 18 24 24 C 1.37877 * 119.99834 * 179.97438 * 22 21 18 25 25 N 1.31515 * 120.00233 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99866 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47154 * 60.00539 * 26 24 22 28 28 H 1.48503 * 109.47165 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47587 * 300.00367 * 26 24 22 30 30 H 1.08995 * 109.47586 * 60.76429 * 1 2 3 31 31 H 1.09005 * 109.46841 * 180.76633 * 1 2 3 32 32 H 1.09007 * 109.47247 * 300.76629 * 1 2 3 33 33 H 1.08997 * 109.46930 * 240.00328 * 2 1 3 34 34 H 1.08998 * 109.47402 * 119.99667 * 2 1 3 35 35 H 1.08999 * 109.47212 * 300.00341 * 8 6 5 36 36 H 1.08997 * 109.47006 * 59.99782 * 8 6 5 37 37 H 1.08999 * 109.47307 * 300.00304 * 9 8 6 38 38 H 1.09000 * 109.47375 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.47401 * 179.97438 * 10 9 8 40 40 H 1.09006 * 109.47267 * 60.00124 * 10 9 8 41 41 H 1.08990 * 109.47457 * 299.99693 * 13 11 10 42 42 H 1.08997 * 109.47280 * 60.00353 * 13 11 10 43 43 H 1.09001 * 109.47341 * 179.97438 * 13 11 10 44 44 H 1.08991 * 109.47840 * 180.02562 * 14 11 10 45 45 H 1.08999 * 109.47182 * 59.99884 * 14 11 10 46 46 H 0.97000 * 119.99896 * 359.97438 * 17 15 3 47 47 H 1.09006 * 109.46834 * 299.99386 * 21 18 17 48 48 H 1.08998 * 109.47434 * 59.99737 * 21 18 17 49 49 H 0.97000 * 120.00157 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6016 1.9829 0.8390 5 8 1.6673 2.0796 -1.2237 6 6 1.4956 3.4939 -1.1140 7 1 2.1876 3.8872 -0.3695 8 6 0.0587 3.8017 -0.6875 9 6 -0.1249 5.3160 -0.5694 10 6 0.1566 5.9710 -1.9231 11 6 1.5933 5.6633 -2.3496 12 1 2.2855 6.0562 -1.6048 13 6 1.8747 6.3177 -3.7036 14 6 1.7771 4.1490 -2.4678 15 6 3.5413 1.4447 0.1304 16 8 4.2248 1.9426 -0.7390 17 7 4.1244 0.8932 1.2132 18 16 5.7741 0.8960 1.3568 19 8 6.0203 0.2221 2.5833 20 8 6.2342 0.3627 0.1227 21 6 6.2134 2.6506 1.4953 22 6 7.7081 2.7849 1.6324 23 1 8.3314 1.9029 1.6362 24 6 8.2799 4.0337 1.7528 25 7 7.5208 5.1077 1.7487 26 14 10.1326 4.2001 1.9234 27 1 10.7941 3.6165 0.7288 28 1 10.4924 5.6366 2.0354 29 1 10.5844 3.4798 3.1408 30 1 -0.3634 0.5019 -0.8967 31 1 -0.3633 -1.0276 0.0137 32 1 -0.3634 0.5257 0.8831 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 -0.6334 3.4083 -1.4320 36 1 -0.1417 3.3354 0.2771 37 1 0.5672 5.7090 0.1753 38 1 -1.1484 5.5352 -0.2651 39 1 0.0253 7.0498 -1.8391 40 1 -0.5355 5.5780 -2.6679 41 1 1.1827 5.9244 -4.4481 42 1 1.7438 7.3966 -3.6199 43 1 2.8984 6.0989 -4.0072 44 1 2.8007 3.9297 -2.7711 45 1 1.0850 3.7560 -3.2125 46 1 3.5776 0.4953 1.9086 47 1 5.8819 3.1798 0.6018 48 1 5.7278 3.0786 2.3723 49 1 7.9231 5.9863 1.8330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835411871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:16 Heat of formation + Delta-G solvation = -196.162647 kcal Electronic energy + Delta-G solvation = -30371.944682 eV Core-core repulsion = 26231.909757 eV Total energy + Delta-G solvation = -4140.034925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40861 -39.01164 -36.96730 -36.22400 -35.18637 -34.51059 -33.38237 -33.30740 -32.37281 -29.92783 -29.08176 -27.44287 -26.51953 -23.57774 -22.79009 -22.42759 -21.67815 -20.86110 -19.85343 -19.27867 -17.86775 -17.33502 -16.96258 -16.32699 -15.82812 -15.48711 -15.18869 -14.99697 -14.70422 -14.49566 -14.41217 -14.29525 -14.19735 -13.85400 -13.48904 -13.01595 -12.66291 -12.54842 -12.49883 -12.26816 -12.11938 -11.98443 -11.94538 -11.88577 -11.49361 -11.41260 -11.29906 -11.25406 -11.20673 -11.12908 -10.97727 -10.90012 -10.76176 -10.66644 -10.57708 -10.48568 -10.43129 -10.04600 -9.88130 -9.30210 -9.13892 -8.71811 -6.34889 -4.46121 1.01353 2.32192 3.09397 3.23507 3.25686 3.30524 3.46070 4.18804 4.28977 4.50838 4.54950 4.60000 4.66816 4.72868 4.77059 4.96320 4.97965 5.02456 5.06410 5.14605 5.16442 5.22208 5.29129 5.32258 5.39472 5.44245 5.51036 5.57802 5.59024 5.72078 5.75770 5.83022 5.85535 5.90682 5.95854 6.03098 6.05487 6.07773 6.17754 6.33547 6.37124 6.54165 6.72081 6.90755 7.10129 7.39742 7.70910 7.78024 8.54616 9.21340 10.76884 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003855 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.171395 B = 7261.526819 C = 9418.537889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.075 3.925 4 H 0.094 0.906 5 O -0.345 6.345 6 C 0.087 3.913 7 H 0.064 0.936 8 C -0.140 4.140 9 C -0.119 4.119 10 C -0.115 4.115 11 C -0.092 4.092 12 H 0.074 0.926 13 C -0.145 4.145 14 C -0.108 4.108 15 C 0.505 3.495 16 O -0.469 6.469 17 N -1.060 6.060 18 S 2.552 3.448 19 O -0.969 6.969 20 O -0.951 6.951 21 C -0.403 4.403 22 C -0.536 4.536 23 H 0.070 0.930 24 C 0.079 3.921 25 N -0.877 5.877 26 Si 0.906 3.094 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.269 1.269 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.423 0.577 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.014 -0.839 -3.712 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.011 3.989 4 H 0.112 0.888 5 O -0.263 6.263 6 C 0.029 3.971 7 H 0.082 0.918 8 C -0.178 4.178 9 C -0.156 4.156 10 C -0.152 4.152 11 C -0.111 4.111 12 H 0.093 0.907 13 C -0.203 4.203 14 C -0.145 4.145 15 C 0.289 3.711 16 O -0.338 6.338 17 N -0.821 5.821 18 S 2.654 3.346 19 O -0.960 6.960 20 O -0.942 6.942 21 C -0.540 4.540 22 C -0.575 4.575 23 H 0.088 0.912 24 C -0.128 4.128 25 N -0.513 5.513 26 Si 0.732 3.268 27 H -0.193 1.193 28 H -0.206 1.206 29 H -0.194 1.194 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.257 0.743 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.066 -1.180 -4.592 19.647 hybrid contribution 0.491 0.681 0.848 1.193 sum -18.575 -0.499 -3.744 18.955 Atomic orbital electron populations 1.21719 0.94181 1.02035 1.02516 1.21616 0.97466 0.92680 1.04001 1.22204 0.89820 0.96787 0.90073 0.88790 1.88020 1.87870 1.20358 1.30025 1.22242 0.95404 0.80596 0.98855 0.91751 1.22080 0.97508 0.96522 1.01691 1.21496 1.01586 0.94711 0.97826 1.21628 0.96508 1.00234 0.96878 1.21115 0.96962 0.94827 0.98149 0.90729 1.21792 1.01903 1.00160 0.96416 1.21585 1.03286 0.93872 0.95763 1.21390 0.92681 0.76482 0.80517 1.90914 1.64755 1.40457 1.37675 1.55561 1.31392 1.66217 1.28978 1.07176 0.71686 0.81645 0.74107 1.93518 1.81962 1.74463 1.46055 1.93534 1.77262 1.78700 1.44670 1.27592 1.06615 1.12543 1.07252 1.20246 0.87575 0.94390 1.55315 0.91183 1.24908 0.99437 0.95076 0.93396 1.69941 1.36050 0.98280 1.47040 0.86406 0.83411 0.77491 0.79522 1.19326 1.20634 1.19369 0.91607 0.92224 0.92679 0.89948 0.89959 0.91083 0.91959 0.91697 0.91746 0.91926 0.91939 0.92798 0.92696 0.92297 0.90408 0.91342 0.74289 0.88482 0.89790 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.16 0.36 -0.77 16 2 C -0.12 -1.17 5.59 -26.73 -0.15 -1.32 16 3 C 0.07 0.91 2.31 -27.88 -0.06 0.85 16 4 H 0.09 0.89 7.39 -51.93 -0.38 0.51 16 5 O -0.35 -4.65 8.76 -55.14 -0.48 -5.14 16 6 C 0.09 1.06 2.31 -26.72 -0.06 1.00 16 7 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 8 C -0.14 -1.31 5.47 -26.73 -0.15 -1.46 16 9 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 10 C -0.11 -1.01 5.20 -26.73 -0.14 -1.15 16 11 C -0.09 -0.97 2.72 -90.62 -0.25 -1.22 16 12 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 14 C -0.11 -1.31 4.85 -26.73 -0.13 -1.44 16 15 C 0.51 8.45 6.83 -10.98 -0.08 8.38 16 16 O -0.47 -9.99 14.53 -22.96 -0.33 -10.32 16 17 N -1.06 -16.93 5.46 31.22 0.17 -16.76 16 18 S 2.55 55.67 5.03 -107.50 -0.54 55.13 16 19 O -0.97 -22.14 18.08 -57.54 -1.04 -23.18 16 20 O -0.95 -24.01 17.04 -64.79 -1.10 -25.11 16 21 C -0.40 -10.05 5.64 36.01 0.20 -9.85 16 22 C -0.54 -15.08 9.13 -34.44 -0.31 -15.39 16 23 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 24 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 25 N -0.88 -24.98 13.29 55.43 0.74 -24.24 16 26 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 30 H 0.06 0.55 7.85 -51.93 -0.41 0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.65 7.42 -51.93 -0.39 0.27 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.42 4.77 8.15 -34.47 -0.28 4.49 16 47 H 0.10 2.54 7.19 -51.92 -0.37 2.16 16 48 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 49 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 405.14 15.07 6.11 6.11 Total: -1.00 -35.72 405.14 -10.70 -46.42 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.52 Total: 3.48 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.67 Total: -22.52 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.91 Total: -41.00 kcal Atomic # 8 Polarization: -60.79 SS G_CDS: -2.96 Total: -63.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.54 Total: 55.13 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.72 -10.70 -46.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.741 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds