Wall clock time and date at job start Wed Apr 1 2020 04:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46670 * 2 1 4 4 H 1.08994 * 109.47267 * 54.73348 * 3 2 1 5 5 O 1.42900 * 109.47328 * 294.72982 * 3 2 1 6 6 C 1.42898 * 114.00138 * 151.59098 * 5 3 2 7 7 H 1.08990 * 109.47248 * 32.64007 * 6 5 3 8 8 C 1.53005 * 109.47112 * 272.64356 * 6 5 3 9 9 C 1.52995 * 109.47253 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47000 * 60.00084 * 9 8 6 11 11 C 1.52994 * 109.47373 * 300.00088 * 10 9 8 12 12 H 1.09006 * 109.46954 * 300.00228 * 11 10 9 13 13 C 1.52998 * 109.47373 * 179.97438 * 11 10 9 14 14 C 1.52998 * 109.47472 * 60.00048 * 11 10 9 15 15 C 1.50703 * 109.47124 * 174.73530 * 3 2 1 16 16 O 1.21276 * 120.00347 * 119.99737 * 15 3 2 17 17 N 1.34782 * 119.99495 * 299.99836 * 15 3 2 18 18 S 1.65594 * 119.99789 * 180.02562 * 17 15 3 19 19 O 1.42097 * 104.27928 * 181.07158 * 18 17 15 20 20 O 1.42102 * 104.27808 * 308.92564 * 18 17 15 21 21 C 1.81401 * 104.45088 * 65.00094 * 18 17 15 22 22 C 1.50700 * 109.47118 * 180.02562 * 21 18 17 23 23 H 1.08001 * 120.00081 * 359.97438 * 22 21 18 24 24 C 1.37877 * 119.99834 * 179.97438 * 22 21 18 25 25 N 1.31515 * 120.00233 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99866 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47154 * 60.00539 * 26 24 22 28 28 H 1.48503 * 109.47165 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47587 * 300.00367 * 26 24 22 30 30 H 1.08995 * 109.47586 * 60.76429 * 1 2 3 31 31 H 1.09005 * 109.46841 * 180.76633 * 1 2 3 32 32 H 1.09007 * 109.47247 * 300.76629 * 1 2 3 33 33 H 1.08997 * 109.46930 * 240.00328 * 2 1 3 34 34 H 1.08998 * 109.47402 * 119.99667 * 2 1 3 35 35 H 1.08999 * 109.47212 * 300.00341 * 8 6 5 36 36 H 1.08997 * 109.47006 * 59.99782 * 8 6 5 37 37 H 1.08999 * 109.47307 * 300.00304 * 9 8 6 38 38 H 1.09000 * 109.47375 * 180.02562 * 9 8 6 39 39 H 1.09004 * 109.47401 * 179.97438 * 10 9 8 40 40 H 1.09006 * 109.47267 * 60.00124 * 10 9 8 41 41 H 1.08990 * 109.47457 * 299.99693 * 13 11 10 42 42 H 1.08997 * 109.47280 * 60.00353 * 13 11 10 43 43 H 1.09001 * 109.47341 * 179.97438 * 13 11 10 44 44 H 1.08991 * 109.47840 * 180.02562 * 14 11 10 45 45 H 1.08999 * 109.47182 * 59.99884 * 14 11 10 46 46 H 0.97000 * 119.99896 * 359.97438 * 17 15 3 47 47 H 1.09006 * 109.46834 * 299.99386 * 21 18 17 48 48 H 1.08998 * 109.47434 * 59.99737 * 21 18 17 49 49 H 0.97000 * 120.00157 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6016 1.9829 0.8390 5 8 1.6673 2.0796 -1.2237 6 6 1.4956 3.4939 -1.1140 7 1 2.1876 3.8872 -0.3695 8 6 0.0587 3.8017 -0.6875 9 6 -0.1249 5.3160 -0.5694 10 6 0.1566 5.9710 -1.9231 11 6 1.5933 5.6633 -2.3496 12 1 2.2855 6.0562 -1.6048 13 6 1.8747 6.3177 -3.7036 14 6 1.7771 4.1490 -2.4678 15 6 3.5413 1.4447 0.1304 16 8 4.2248 1.9426 -0.7390 17 7 4.1244 0.8932 1.2132 18 16 5.7741 0.8960 1.3568 19 8 6.0203 0.2221 2.5833 20 8 6.2342 0.3627 0.1227 21 6 6.2134 2.6506 1.4953 22 6 7.7081 2.7849 1.6324 23 1 8.3314 1.9029 1.6362 24 6 8.2799 4.0337 1.7528 25 7 7.5208 5.1077 1.7487 26 14 10.1326 4.2001 1.9234 27 1 10.7941 3.6165 0.7288 28 1 10.4924 5.6366 2.0354 29 1 10.5844 3.4798 3.1408 30 1 -0.3634 0.5019 -0.8967 31 1 -0.3633 -1.0276 0.0137 32 1 -0.3634 0.5257 0.8831 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 -0.6334 3.4083 -1.4320 36 1 -0.1417 3.3354 0.2771 37 1 0.5672 5.7090 0.1753 38 1 -1.1484 5.5352 -0.2651 39 1 0.0253 7.0498 -1.8391 40 1 -0.5355 5.5780 -2.6679 41 1 1.1827 5.9244 -4.4481 42 1 1.7438 7.3966 -3.6199 43 1 2.8984 6.0989 -4.0072 44 1 2.8007 3.9297 -2.7711 45 1 1.0850 3.7560 -3.2125 46 1 3.5776 0.4953 1.9086 47 1 5.8819 3.1798 0.6018 48 1 5.7278 3.0786 2.3723 49 1 7.9231 5.9863 1.8330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835411871.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:15 Heat of formation + Delta-G solvation = -220.699113 kcal Electronic energy + Delta-G solvation = -30373.008663 eV Core-core repulsion = 26231.909757 eV Total energy + Delta-G solvation = -4141.098906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.66699 -40.05535 -38.22161 -37.85540 -37.10175 -35.89089 -35.46753 -34.27774 -33.16216 -31.15263 -30.78454 -28.43038 -27.31951 -25.66076 -23.80335 -23.29890 -22.58416 -21.93832 -20.91053 -20.70015 -19.43865 -18.91552 -18.53435 -17.77210 -17.55045 -16.73149 -16.60831 -16.22598 -16.14945 -16.00454 -15.72265 -15.26344 -15.03651 -14.68799 -14.56132 -14.40021 -14.18545 -13.79762 -13.76590 -13.53617 -13.33813 -13.27920 -13.25205 -13.14567 -13.04527 -12.87260 -12.76259 -12.75463 -12.58247 -12.17914 -12.07226 -12.03059 -11.92170 -11.88859 -11.80021 -11.68776 -11.40213 -11.26722 -11.16292 -11.02904 -10.82252 -10.35761 -8.46402 -6.66167 -0.79688 0.95424 1.34618 1.39113 1.46913 1.54141 2.26851 2.45622 2.70404 2.87450 3.02815 3.34795 3.66912 3.74141 3.81350 3.84921 3.94094 3.99444 4.17260 4.19628 4.24206 4.39217 4.50195 4.52058 4.56021 4.59369 4.65014 4.68493 4.75889 4.83156 4.86013 4.94977 5.01639 5.09354 5.13211 5.14591 5.21586 5.24441 5.28500 5.30393 5.36927 5.42375 5.48676 5.54726 5.60855 5.66233 6.07643 6.41822 6.47097 7.05866 8.66354 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003855 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.171395 B = 7261.526819 C = 9418.537889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.080 3.920 4 H 0.131 0.869 5 O -0.359 6.359 6 C 0.081 3.919 7 H 0.041 0.959 8 C -0.131 4.131 9 C -0.118 4.118 10 C -0.110 4.110 11 C -0.092 4.092 12 H 0.052 0.948 13 C -0.144 4.144 14 C -0.107 4.107 15 C 0.500 3.500 16 O -0.521 6.521 17 N -1.039 6.039 18 S 2.595 3.405 19 O -0.976 6.976 20 O -0.986 6.986 21 C -0.419 4.419 22 C -0.572 4.572 23 H 0.068 0.932 24 C 0.027 3.973 25 N -0.907 5.907 26 Si 0.966 3.034 27 H -0.266 1.266 28 H -0.267 1.267 29 H -0.256 1.256 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.078 0.922 46 H 0.447 0.553 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.322 -1.211 -2.694 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.016 3.984 4 H 0.148 0.852 5 O -0.276 6.276 6 C 0.023 3.977 7 H 0.060 0.940 8 C -0.168 4.168 9 C -0.156 4.156 10 C -0.148 4.148 11 C -0.111 4.111 12 H 0.071 0.929 13 C -0.201 4.201 14 C -0.145 4.145 15 C 0.287 3.713 16 O -0.393 6.393 17 N -0.807 5.807 18 S 2.695 3.305 19 O -0.967 6.967 20 O -0.977 6.977 21 C -0.554 4.554 22 C -0.611 4.611 23 H 0.086 0.914 24 C -0.177 4.177 25 N -0.543 5.543 26 Si 0.787 3.213 27 H -0.191 1.191 28 H -0.191 1.191 29 H -0.180 1.180 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.097 0.903 46 H 0.287 0.713 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.390 -1.553 -3.536 21.736 hybrid contribution 1.147 0.778 0.499 1.473 sum -20.242 -0.775 -3.037 20.484 Atomic orbital electron populations 1.21696 0.92024 1.03161 1.03005 1.21748 0.99253 0.90476 1.04368 1.22511 0.85890 0.99017 0.90961 0.85217 1.88017 1.87513 1.20942 1.31140 1.22363 0.97186 0.80035 0.98068 0.94037 1.22018 0.94932 0.97207 1.02677 1.21527 1.02627 0.94055 0.97391 1.21606 0.94769 1.01056 0.97340 1.21112 0.98272 0.93521 0.98156 0.92904 1.21789 1.01229 1.00923 0.96201 1.21581 1.01222 0.95323 0.96355 1.22543 0.94773 0.74710 0.79317 1.90902 1.66177 1.42668 1.39541 1.54987 1.29598 1.66183 1.29916 1.05556 0.72710 0.79231 0.72979 1.93499 1.83161 1.73718 1.46296 1.93489 1.79231 1.78539 1.46396 1.27638 1.05504 1.16018 1.06219 1.20698 0.89412 0.94900 1.56044 0.91433 1.25866 1.04411 0.94680 0.92697 1.70025 1.38063 0.98821 1.47367 0.85484 0.77532 0.78328 0.79909 1.19062 1.19126 1.18017 0.92441 0.90860 0.90819 0.91591 0.87715 0.90110 0.90337 0.92734 0.89451 0.90876 0.90724 0.91512 0.91497 0.93988 0.94151 0.90336 0.71277 0.90739 0.89455 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.80 71.98 0.71 -0.98 16 2 C -0.12 -2.07 5.59 30.60 0.17 -1.89 16 3 C 0.08 1.84 2.31 29.85 0.07 1.90 16 4 H 0.13 2.09 7.39 -2.39 -0.02 2.07 16 5 O -0.36 -9.55 8.76 -129.94 -1.14 -10.69 16 6 C 0.08 1.99 2.31 30.60 0.07 2.06 16 7 H 0.04 1.19 7.79 -2.39 -0.02 1.17 16 8 C -0.13 -2.15 5.47 30.59 0.17 -1.98 16 9 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 10 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 11 C -0.09 -1.99 2.72 -10.80 -0.03 -2.02 16 12 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 13 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 14 C -0.11 -2.73 4.85 30.60 0.15 -2.59 16 15 C 0.50 16.83 6.83 87.66 0.60 17.43 16 16 O -0.52 -23.33 14.53 24.25 0.35 -22.98 16 17 N -1.04 -32.58 5.46 -173.53 -0.95 -33.53 16 18 S 2.60 114.75 5.03 -56.49 -0.28 114.46 16 19 O -0.98 -44.05 18.08 -127.65 -2.31 -46.36 16 20 O -0.99 -51.01 17.04 -120.71 -2.06 -53.07 16 21 C -0.42 -21.74 5.64 71.24 0.40 -21.34 16 22 C -0.57 -33.13 9.13 25.60 0.23 -32.89 16 23 H 0.07 3.81 7.71 -2.91 -0.02 3.79 16 24 C 0.03 1.54 5.46 84.65 0.46 2.00 16 25 N -0.91 -52.85 13.29 21.45 0.28 -52.56 16 26 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 30 H 0.06 0.80 7.85 -2.39 -0.02 0.78 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.10 1.30 7.42 -2.39 -0.02 1.28 16 35 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.45 9.12 8.15 -96.75 -0.79 8.33 16 47 H 0.07 4.16 7.19 -2.39 -0.02 4.14 16 48 H 0.09 4.33 8.14 -2.39 -0.02 4.32 16 49 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -80.60 405.14 0.07 -80.53 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.14 Total: 24.32 kcal Atomic # 6 Polarization: -49.66 SS G_CDS: 4.00 Total: -45.65 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -0.66 Total: -86.09 kcal Atomic # 8 Polarization: -127.95 SS G_CDS: -5.15 Total: -133.10 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 114.75 SS G_CDS: -0.28 Total: 114.46 kcal Total: -80.60 0.07 -80.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835411871.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.171 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds