Wall clock time and date at job start Wed Apr 1 2020 04:05:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53006 * 109.47414 * 2 1
4 4 H 1.09003 * 109.46517 * 305.00624 * 3 2 1
5 5 C 1.54285 * 109.53787 * 185.02032 * 3 2 1
6 6 N 1.45130 * 109.82243 * 172.11297 * 5 3 2
7 7 C 1.34772 * 118.75953 * 269.42084 * 6 5 3
8 8 O 1.21353 * 120.00107 * 186.45875 * 7 6 5
9 9 C 1.49368 * 119.99882 * 6.44951 * 7 6 5
10 10 O 1.21357 * 119.99837 * 7.31794 * 9 7 6
11 11 N 1.34777 * 120.00307 * 187.30770 * 9 7 6
12 12 C 1.39110 * 120.00522 * 185.83125 * 11 9 7
13 13 C 1.39707 * 119.57881 * 175.68189 * 12 11 9
14 14 C 1.38645 * 119.49113 * 180.02562 * 13 12 11
15 15 C 1.38347 * 118.67442 * 0.02562 * 14 13 12
16 16 C 1.40591 * 119.13762 * 359.97438 * 15 14 13
17 17 C 1.41333 * 119.78997 * 179.97438 * 16 15 14
18 18 H 1.07996 * 119.99968 * 8.48457 * 17 16 15
19 19 C 1.40031 * 120.00318 * 188.47528 * 17 16 15
20 20 N 1.30739 * 119.99669 * 6.87580 * 19 17 16
21 21 Si 1.86797 * 120.00255 * 186.87361 * 19 17 16
22 22 H 1.48495 * 109.47131 * 85.00365 * 21 19 17
23 23 H 1.48507 * 109.47236 * 205.00295 * 21 19 17
24 24 H 1.48498 * 109.47168 * 325.00137 * 21 19 17
25 25 N 1.31938 * 119.57802 * 355.66994 * 12 11 9
26 26 C 1.47510 * 122.47910 * 89.14372 * 6 5 3
27 27 C 1.53571 * 111.03152 * 318.62563 * 26 6 5
28 28 C 1.51540 * 109.58061 * 320.02441 * 27 26 6
29 29 O 1.38020 * 109.46848 * 64.99562 * 3 2 1
30 30 H 1.08992 * 109.47107 * 300.00015 * 1 2 3
31 31 H 1.08998 * 109.46744 * 60.00165 * 1 2 3
32 32 H 1.08995 * 109.46979 * 179.97438 * 1 2 3
33 33 H 1.09005 * 109.47388 * 240.00178 * 2 1 3
34 34 H 1.09003 * 109.47178 * 120.00038 * 2 1 3
35 35 H 1.09001 * 109.22181 * 52.06537 * 5 3 2
36 36 H 1.09000 * 109.40764 * 292.27784 * 5 3 2
37 37 H 0.96999 * 119.99378 * 5.84174 * 11 9 7
38 38 H 1.07999 * 120.25394 * 359.73136 * 13 12 11
39 39 H 1.07999 * 120.66366 * 179.97438 * 14 13 12
40 40 H 1.08002 * 120.43129 * 180.02562 * 15 14 13
41 41 H 0.96999 * 120.00158 * 179.97438 * 20 19 17
42 42 H 1.08996 * 109.16624 * 79.02954 * 26 6 5
43 43 H 1.09005 * 109.16188 * 198.28128 * 26 6 5
44 44 H 1.08997 * 109.44964 * 80.05930 * 27 26 6
45 45 H 1.08997 * 109.45573 * 199.99165 * 27 26 6
46 46 H 1.09001 * 109.58860 * 211.17716 * 28 27 26
47 47 H 1.08995 * 109.59393 * 331.62086 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5777 1.4461 -0.1272
6 7 4.0528 2.8045 -0.3149
7 6 4.1798 3.2796 -1.5697
8 8 4.6843 4.3669 -1.7587
9 6 3.6997 2.4675 -2.7278
10 8 3.0773 1.4438 -2.5345
11 7 3.9574 2.8718 -3.9874
12 6 3.4086 2.1840 -5.0648
13 6 3.6068 2.6633 -6.3621
14 6 3.0586 1.9766 -7.4345
15 6 2.3264 0.8298 -7.1842
16 6 2.1626 0.3985 -5.8561
17 6 1.4168 -0.7709 -5.5845
18 1 1.0915 -1.4046 -6.3963
19 6 1.0997 -1.1081 -4.2629
20 7 1.3748 -0.2765 -3.2922
21 14 0.2838 -2.7458 -3.8867
22 1 1.3233 -3.7981 -3.7555
23 1 -0.4764 -2.6397 -2.6155
24 1 -0.6441 -3.1015 -4.9902
25 7 2.7078 1.0873 -4.8486
26 6 4.3964 3.6869 0.8162
27 6 3.3738 3.5484 1.9536
28 6 1.9792 3.4348 1.3716
29 8 1.6749 2.0596 1.1793
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 -0.0005
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8900
35 1 3.8683 0.8381 -0.9840
36 1 4.0171 1.0296 0.7792
37 1 4.5258 3.6424 -4.1426
38 1 4.1786 3.5643 -6.5279
39 1 3.1996 2.3304 -8.4452
40 1 1.8870 0.2726 -7.9984
41 1 1.1549 -0.5099 -2.3768
42 1 5.3853 3.4213 1.1897
43 1 4.4098 4.7211 0.4720
44 1 3.5979 2.6550 2.5363
45 1 3.4275 4.4252 2.5988
46 1 1.2587 3.8756 2.0606
47 1 1.9389 3.9552 0.4148
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000890261851.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:41
Heat of formation + Delta-G solvation = -38.808334 kcal
Electronic energy + Delta-G solvation = -33002.872182 eV
Core-core repulsion = 28766.509452 eV
Total energy + Delta-G solvation = -4236.362730 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 347.168 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.89582 -39.25240 -38.39076 -37.32951 -35.53331 -34.65867 -33.80648 -33.14864
-31.62824 -30.42104 -29.23755 -28.11784 -26.88887 -25.73502 -24.54596 -23.14622
-21.87762 -21.40719 -20.90538 -20.37746 -19.21327 -17.96735 -17.17516 -16.96385
-16.57303 -16.32925 -15.86885 -15.28870 -15.18087 -14.81089 -14.53326 -14.28734
-14.07408 -13.76227 -13.61352 -13.35513 -13.20047 -13.09780 -12.83814 -12.57927
-12.37805 -12.07846 -12.03613 -11.77391 -11.32731 -11.22598 -11.21435 -11.03643
-10.92978 -10.80081 -10.72942 -10.63162 -10.44757 -10.24491 -10.02616 -9.76348
-9.49578 -9.10676 -8.84351 -8.54754 -8.08243 -7.35335 -7.08867 -6.31803
-4.46136 1.82430 2.63292 2.77990 3.04000 3.10577 3.13084 3.20488
3.76586 3.82561 3.88521 3.98895 4.63393 4.76947 4.81239 4.83865
5.02985 5.20842 5.23822 5.32779 5.43590 5.54433 5.58089 5.65869
5.78317 5.85101 5.90721 5.92618 6.00397 6.03667 6.15769 6.25106
6.35407 6.39769 6.48746 6.53955 6.57070 6.63415 6.73063 6.76799
7.13530 7.23701 7.41098 7.48535 7.73077 7.79043 7.82422 7.99300
8.10896 8.34455 8.59342 8.86443 8.97982 10.09240 10.36612
Molecular weight = 347.17amu
Principal moments of inertia in cm(-1)
A = 0.010219 B = 0.005406 C = 0.003696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2739.354627 B = 5178.032650 C = 7573.905670
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.108 4.108
3 C 0.103 3.897
4 H 0.065 0.935
5 C 0.065 3.935
6 N -0.586 5.586
7 C 0.501 3.499
8 O -0.534 6.534
9 C 0.466 3.534
10 O -0.383 6.383
11 N -0.637 5.637
12 C 0.368 3.632
13 C -0.347 4.347
14 C -0.036 4.036
15 C -0.300 4.300
16 C 0.276 3.724
17 C -0.426 4.426
18 H 0.082 0.918
19 C 0.067 3.933
20 N -0.671 5.671
21 Si 0.887 3.113
22 H -0.269 1.269
23 H -0.275 1.275
24 H -0.263 1.263
25 N -0.474 5.474
26 C 0.108 3.892
27 C -0.164 4.164
28 C 0.075 3.925
29 O -0.389 6.389
30 H 0.054 0.946
31 H 0.058 0.942
32 H 0.048 0.952
33 H 0.095 0.905
34 H 0.059 0.941
35 H 0.122 0.878
36 H 0.072 0.928
37 H 0.411 0.589
38 H 0.094 0.906
39 H 0.098 0.902
40 H 0.098 0.902
41 H 0.276 0.724
42 H 0.067 0.933
43 H 0.090 0.910
44 H 0.080 0.920
45 H 0.085 0.915
46 H 0.087 0.913
47 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.536 4.162 10.978 12.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.146 4.146
3 C 0.044 3.956
4 H 0.083 0.917
5 C -0.057 4.057
6 N -0.319 5.319
7 C 0.284 3.716
8 O -0.411 6.411
9 C 0.244 3.756
10 O -0.247 6.247
11 N -0.285 5.285
12 C 0.130 3.870
13 C -0.373 4.373
14 C -0.060 4.060
15 C -0.323 4.323
16 C 0.151 3.849
17 C -0.456 4.456
18 H 0.100 0.900
19 C -0.162 4.162
20 N -0.293 5.293
21 Si 0.711 3.289
22 H -0.194 1.194
23 H -0.200 1.200
24 H -0.187 1.187
25 N -0.194 5.194
26 C -0.013 4.013
27 C -0.202 4.202
28 C -0.001 4.001
29 O -0.308 6.308
30 H 0.073 0.927
31 H 0.077 0.923
32 H 0.067 0.933
33 H 0.113 0.887
34 H 0.078 0.922
35 H 0.139 0.861
36 H 0.090 0.910
37 H 0.246 0.754
38 H 0.112 0.888
39 H 0.116 0.884
40 H 0.116 0.884
41 H 0.091 0.909
42 H 0.086 0.914
43 H 0.108 0.892
44 H 0.098 0.902
45 H 0.103 0.897
46 H 0.105 0.895
47 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 2.076 3.583 12.352 13.028
hybrid contribution 0.360 0.322 -0.952 1.068
sum 2.436 3.905 11.400 12.294
Atomic orbital electron populations
1.21674 0.95505 1.01129 1.02030 1.21530 0.96607 0.93696 1.02786
1.21877 0.92485 0.94704 0.86554 0.91679 1.22960 0.96313 0.81948
1.04515 1.47785 1.64339 1.14751 1.05042 1.20967 0.79143 0.86587
0.84890 1.90681 1.43043 1.22087 1.85247 1.20069 0.84199 0.87351
0.84006 1.91085 1.31470 1.19478 1.82667 1.43015 1.49545 1.31994
1.03947 1.18501 0.92806 0.91816 0.83888 1.20505 1.18328 1.06584
0.91907 1.20582 0.94767 0.94272 0.96356 1.21667 1.11360 1.01460
0.97834 1.18310 0.89114 0.91450 0.85998 1.19537 1.27766 1.05330
0.92984 0.89960 1.26037 0.95740 0.97784 0.96610 1.70280 1.26580
1.31995 1.00404 0.86650 0.80101 0.83242 0.78874 1.19378 1.20000
1.18716 1.68538 1.12403 1.05392 1.33023 1.21877 0.97873 0.95473
0.86117 1.22474 0.96094 1.03650 0.97989 1.22087 0.94992 0.82993
1.00066 1.86226 1.80982 1.23747 1.39883 0.92674 0.92314 0.93265
0.88681 0.92206 0.86073 0.90962 0.75386 0.88795 0.88424 0.88413
0.90914 0.91426 0.89169 0.90171 0.89671 0.89484 0.93246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.23 9.31 37.16 0.35 -1.89 16
2 C -0.11 -1.67 5.29 -26.73 -0.14 -1.81 16
3 C 0.10 1.61 1.93 -26.06 -0.05 1.56 16
4 H 0.07 1.24 7.10 -51.93 -0.37 0.87 16
5 C 0.07 0.97 4.37 -4.10 -0.02 0.95 16
6 N -0.59 -8.61 2.20 -173.34 -0.38 -8.99 16
7 C 0.50 8.69 7.67 -11.63 -0.09 8.60 16
8 O -0.53 -9.74 15.88 5.49 0.09 -9.66 16
9 C 0.47 9.29 7.59 -11.62 -0.09 9.21 16
10 O -0.38 -8.30 7.68 5.49 0.04 -8.26 16
11 N -0.64 -12.86 5.36 -11.83 -0.06 -12.92 16
12 C 0.37 8.68 7.43 -155.09 -1.15 7.52 16
13 C -0.35 -7.64 9.95 -38.88 -0.39 -8.03 16
14 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16
15 C -0.30 -7.24 9.83 -38.65 -0.38 -7.62 16
16 C 0.28 7.33 6.51 -85.00 -0.55 6.78 16
17 C -0.43 -11.02 9.13 -37.73 -0.34 -11.36 16
18 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16
19 C 0.07 1.63 5.47 -17.34 -0.09 1.54 16
20 N -0.67 -16.45 9.34 55.55 0.52 -15.93 16
21 Si 0.89 18.03 29.57 -169.99 -5.03 13.00 16
22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16
23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16
24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16
25 N -0.47 -12.43 5.78 -10.28 -0.06 -12.49 16
26 C 0.11 1.26 6.11 -3.19 -0.02 1.24 16
27 C -0.16 -1.60 5.78 -27.17 -0.16 -1.76 16
28 C 0.08 0.90 6.38 36.42 0.23 1.13 16
29 O -0.39 -5.57 8.99 -26.55 -0.24 -5.81 16
30 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16
31 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16
32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.10 1.67 5.73 -51.93 -0.30 1.37 16
34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
35 H 0.12 2.08 5.45 -51.93 -0.28 1.80 16
36 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16
37 H 0.41 7.19 8.22 -40.82 -0.34 6.86 16
38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16
39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16
40 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16
41 H 0.28 6.14 4.66 -40.82 -0.19 5.95 16
42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
43 H 0.09 1.10 7.08 -51.93 -0.37 0.73 16
44 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16
45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
47 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16
LS Contribution 369.41 15.07 5.57 5.57
Total: -1.00 -28.77 369.41 -9.33 -38.10
By element:
Atomic # 1 Polarization: 18.99 SS G_CDS: -6.48 Total: 12.51 kcal
Atomic # 6 Polarization: 8.17 SS G_CDS: -3.30 Total: 4.88 kcal
Atomic # 7 Polarization: -50.35 SS G_CDS: 0.01 Total: -50.34 kcal
Atomic # 8 Polarization: -23.62 SS G_CDS: -0.11 Total: -23.73 kcal
Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -28.77 -9.33 -38.10 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890261851.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.710 kcal
(2) G-P(sol) polarization free energy of solvation -28.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.808 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds