Wall clock time and date at job start Wed Apr 1 2020 04:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47414 * 2 1 4 4 H 1.09003 * 109.46517 * 305.00624 * 3 2 1 5 5 C 1.54285 * 109.53787 * 185.02032 * 3 2 1 6 6 N 1.45130 * 109.82243 * 172.11297 * 5 3 2 7 7 C 1.34772 * 118.75953 * 269.42084 * 6 5 3 8 8 O 1.21353 * 120.00107 * 186.45875 * 7 6 5 9 9 C 1.49368 * 119.99882 * 6.44951 * 7 6 5 10 10 O 1.21357 * 119.99837 * 7.31794 * 9 7 6 11 11 N 1.34777 * 120.00307 * 187.30770 * 9 7 6 12 12 C 1.39110 * 120.00522 * 185.83125 * 11 9 7 13 13 C 1.39707 * 119.57881 * 175.68189 * 12 11 9 14 14 C 1.38645 * 119.49113 * 180.02562 * 13 12 11 15 15 C 1.38347 * 118.67442 * 0.02562 * 14 13 12 16 16 C 1.40591 * 119.13762 * 359.97438 * 15 14 13 17 17 C 1.41333 * 119.78997 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99968 * 8.48457 * 17 16 15 19 19 C 1.40031 * 120.00318 * 188.47528 * 17 16 15 20 20 N 1.30739 * 119.99669 * 6.87580 * 19 17 16 21 21 Si 1.86797 * 120.00255 * 186.87361 * 19 17 16 22 22 H 1.48495 * 109.47131 * 85.00365 * 21 19 17 23 23 H 1.48507 * 109.47236 * 205.00295 * 21 19 17 24 24 H 1.48498 * 109.47168 * 325.00137 * 21 19 17 25 25 N 1.31938 * 119.57802 * 355.66994 * 12 11 9 26 26 C 1.47510 * 122.47910 * 89.14372 * 6 5 3 27 27 C 1.53571 * 111.03152 * 318.62563 * 26 6 5 28 28 C 1.51540 * 109.58061 * 320.02441 * 27 26 6 29 29 O 1.38020 * 109.46848 * 64.99562 * 3 2 1 30 30 H 1.08992 * 109.47107 * 300.00015 * 1 2 3 31 31 H 1.08998 * 109.46744 * 60.00165 * 1 2 3 32 32 H 1.08995 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47388 * 240.00178 * 2 1 3 34 34 H 1.09003 * 109.47178 * 120.00038 * 2 1 3 35 35 H 1.09001 * 109.22181 * 52.06537 * 5 3 2 36 36 H 1.09000 * 109.40764 * 292.27784 * 5 3 2 37 37 H 0.96999 * 119.99378 * 5.84174 * 11 9 7 38 38 H 1.07999 * 120.25394 * 359.73136 * 13 12 11 39 39 H 1.07999 * 120.66366 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.43129 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.16624 * 79.02954 * 26 6 5 43 43 H 1.09005 * 109.16188 * 198.28128 * 26 6 5 44 44 H 1.08997 * 109.44964 * 80.05930 * 27 26 6 45 45 H 1.08997 * 109.45573 * 199.99165 * 27 26 6 46 46 H 1.09001 * 109.58860 * 211.17716 * 28 27 26 47 47 H 1.08995 * 109.59393 * 331.62086 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5777 1.4461 -0.1272 6 7 4.0528 2.8045 -0.3149 7 6 4.1798 3.2796 -1.5697 8 8 4.6843 4.3669 -1.7587 9 6 3.6997 2.4675 -2.7278 10 8 3.0773 1.4438 -2.5345 11 7 3.9574 2.8718 -3.9874 12 6 3.4086 2.1840 -5.0648 13 6 3.6068 2.6633 -6.3621 14 6 3.0586 1.9766 -7.4345 15 6 2.3264 0.8298 -7.1842 16 6 2.1626 0.3985 -5.8561 17 6 1.4168 -0.7709 -5.5845 18 1 1.0915 -1.4046 -6.3963 19 6 1.0997 -1.1081 -4.2629 20 7 1.3748 -0.2765 -3.2922 21 14 0.2838 -2.7458 -3.8867 22 1 1.3233 -3.7981 -3.7555 23 1 -0.4764 -2.6397 -2.6155 24 1 -0.6441 -3.1015 -4.9902 25 7 2.7078 1.0873 -4.8486 26 6 4.3964 3.6869 0.8162 27 6 3.3738 3.5484 1.9536 28 6 1.9792 3.4348 1.3716 29 8 1.6749 2.0596 1.1793 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8683 0.8381 -0.9840 36 1 4.0171 1.0296 0.7792 37 1 4.5258 3.6424 -4.1426 38 1 4.1786 3.5643 -6.5279 39 1 3.1996 2.3304 -8.4452 40 1 1.8870 0.2726 -7.9984 41 1 1.1549 -0.5099 -2.3768 42 1 5.3853 3.4213 1.1897 43 1 4.4098 4.7211 0.4720 44 1 3.5979 2.6550 2.5363 45 1 3.4275 4.4252 2.5988 46 1 1.2587 3.8756 2.0606 47 1 1.9389 3.9552 0.4148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890261851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:41 Heat of formation + Delta-G solvation = -38.808334 kcal Electronic energy + Delta-G solvation = -33002.872182 eV Core-core repulsion = 28766.509452 eV Total energy + Delta-G solvation = -4236.362730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89582 -39.25240 -38.39076 -37.32951 -35.53331 -34.65867 -33.80648 -33.14864 -31.62824 -30.42104 -29.23755 -28.11784 -26.88887 -25.73502 -24.54596 -23.14622 -21.87762 -21.40719 -20.90538 -20.37746 -19.21327 -17.96735 -17.17516 -16.96385 -16.57303 -16.32925 -15.86885 -15.28870 -15.18087 -14.81089 -14.53326 -14.28734 -14.07408 -13.76227 -13.61352 -13.35513 -13.20047 -13.09780 -12.83814 -12.57927 -12.37805 -12.07846 -12.03613 -11.77391 -11.32731 -11.22598 -11.21435 -11.03643 -10.92978 -10.80081 -10.72942 -10.63162 -10.44757 -10.24491 -10.02616 -9.76348 -9.49578 -9.10676 -8.84351 -8.54754 -8.08243 -7.35335 -7.08867 -6.31803 -4.46136 1.82430 2.63292 2.77990 3.04000 3.10577 3.13084 3.20488 3.76586 3.82561 3.88521 3.98895 4.63393 4.76947 4.81239 4.83865 5.02985 5.20842 5.23822 5.32779 5.43590 5.54433 5.58089 5.65869 5.78317 5.85101 5.90721 5.92618 6.00397 6.03667 6.15769 6.25106 6.35407 6.39769 6.48746 6.53955 6.57070 6.63415 6.73063 6.76799 7.13530 7.23701 7.41098 7.48535 7.73077 7.79043 7.82422 7.99300 8.10896 8.34455 8.59342 8.86443 8.97982 10.09240 10.36612 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.005406 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.354627 B = 5178.032650 C = 7573.905670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.103 3.897 4 H 0.065 0.935 5 C 0.065 3.935 6 N -0.586 5.586 7 C 0.501 3.499 8 O -0.534 6.534 9 C 0.466 3.534 10 O -0.383 6.383 11 N -0.637 5.637 12 C 0.368 3.632 13 C -0.347 4.347 14 C -0.036 4.036 15 C -0.300 4.300 16 C 0.276 3.724 17 C -0.426 4.426 18 H 0.082 0.918 19 C 0.067 3.933 20 N -0.671 5.671 21 Si 0.887 3.113 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.263 1.263 25 N -0.474 5.474 26 C 0.108 3.892 27 C -0.164 4.164 28 C 0.075 3.925 29 O -0.389 6.389 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.276 0.724 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 4.162 10.978 12.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C 0.044 3.956 4 H 0.083 0.917 5 C -0.057 4.057 6 N -0.319 5.319 7 C 0.284 3.716 8 O -0.411 6.411 9 C 0.244 3.756 10 O -0.247 6.247 11 N -0.285 5.285 12 C 0.130 3.870 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.323 4.323 16 C 0.151 3.849 17 C -0.456 4.456 18 H 0.100 0.900 19 C -0.162 4.162 20 N -0.293 5.293 21 Si 0.711 3.289 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.187 1.187 25 N -0.194 5.194 26 C -0.013 4.013 27 C -0.202 4.202 28 C -0.001 4.001 29 O -0.308 6.308 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.076 3.583 12.352 13.028 hybrid contribution 0.360 0.322 -0.952 1.068 sum 2.436 3.905 11.400 12.294 Atomic orbital electron populations 1.21674 0.95505 1.01129 1.02030 1.21530 0.96607 0.93696 1.02786 1.21877 0.92485 0.94704 0.86554 0.91679 1.22960 0.96313 0.81948 1.04515 1.47785 1.64339 1.14751 1.05042 1.20967 0.79143 0.86587 0.84890 1.90681 1.43043 1.22087 1.85247 1.20069 0.84199 0.87351 0.84006 1.91085 1.31470 1.19478 1.82667 1.43015 1.49545 1.31994 1.03947 1.18501 0.92806 0.91816 0.83888 1.20505 1.18328 1.06584 0.91907 1.20582 0.94767 0.94272 0.96356 1.21667 1.11360 1.01460 0.97834 1.18310 0.89114 0.91450 0.85998 1.19537 1.27766 1.05330 0.92984 0.89960 1.26037 0.95740 0.97784 0.96610 1.70280 1.26580 1.31995 1.00404 0.86650 0.80101 0.83242 0.78874 1.19378 1.20000 1.18716 1.68538 1.12403 1.05392 1.33023 1.21877 0.97873 0.95473 0.86117 1.22474 0.96094 1.03650 0.97989 1.22087 0.94992 0.82993 1.00066 1.86226 1.80982 1.23747 1.39883 0.92674 0.92314 0.93265 0.88681 0.92206 0.86073 0.90962 0.75386 0.88795 0.88424 0.88413 0.90914 0.91426 0.89169 0.90171 0.89671 0.89484 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.31 37.16 0.35 -1.89 16 2 C -0.11 -1.67 5.29 -26.73 -0.14 -1.81 16 3 C 0.10 1.61 1.93 -26.06 -0.05 1.56 16 4 H 0.07 1.24 7.10 -51.93 -0.37 0.87 16 5 C 0.07 0.97 4.37 -4.10 -0.02 0.95 16 6 N -0.59 -8.61 2.20 -173.34 -0.38 -8.99 16 7 C 0.50 8.69 7.67 -11.63 -0.09 8.60 16 8 O -0.53 -9.74 15.88 5.49 0.09 -9.66 16 9 C 0.47 9.29 7.59 -11.62 -0.09 9.21 16 10 O -0.38 -8.30 7.68 5.49 0.04 -8.26 16 11 N -0.64 -12.86 5.36 -11.83 -0.06 -12.92 16 12 C 0.37 8.68 7.43 -155.09 -1.15 7.52 16 13 C -0.35 -7.64 9.95 -38.88 -0.39 -8.03 16 14 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 15 C -0.30 -7.24 9.83 -38.65 -0.38 -7.62 16 16 C 0.28 7.33 6.51 -85.00 -0.55 6.78 16 17 C -0.43 -11.02 9.13 -37.73 -0.34 -11.36 16 18 H 0.08 2.02 7.86 -52.49 -0.41 1.61 16 19 C 0.07 1.63 5.47 -17.34 -0.09 1.54 16 20 N -0.67 -16.45 9.34 55.55 0.52 -15.93 16 21 Si 0.89 18.03 29.57 -169.99 -5.03 13.00 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 N -0.47 -12.43 5.78 -10.28 -0.06 -12.49 16 26 C 0.11 1.26 6.11 -3.19 -0.02 1.24 16 27 C -0.16 -1.60 5.78 -27.17 -0.16 -1.76 16 28 C 0.08 0.90 6.38 36.42 0.23 1.13 16 29 O -0.39 -5.57 8.99 -26.55 -0.24 -5.81 16 30 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.67 5.73 -51.93 -0.30 1.37 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.12 2.08 5.45 -51.93 -0.28 1.80 16 36 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.41 7.19 8.22 -40.82 -0.34 6.86 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.28 6.14 4.66 -40.82 -0.19 5.95 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.10 7.08 -51.93 -0.37 0.73 16 44 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.67 7.40 -51.93 -0.38 0.29 16 LS Contribution 369.41 15.07 5.57 5.57 Total: -1.00 -28.77 369.41 -9.33 -38.10 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.48 Total: 12.51 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -3.30 Total: 4.88 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.01 Total: -50.34 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.11 Total: -23.73 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.77 -9.33 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890261851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.710 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds