Wall clock time and date at job start Wed Apr 1 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47414 * 2 1 4 4 H 1.09003 * 109.46517 * 305.00624 * 3 2 1 5 5 C 1.54285 * 109.53787 * 185.02032 * 3 2 1 6 6 N 1.45130 * 109.82243 * 172.11297 * 5 3 2 7 7 C 1.34772 * 118.75953 * 269.42084 * 6 5 3 8 8 O 1.21353 * 120.00107 * 186.45875 * 7 6 5 9 9 C 1.49368 * 119.99882 * 6.44951 * 7 6 5 10 10 O 1.21357 * 119.99837 * 7.31794 * 9 7 6 11 11 N 1.34777 * 120.00307 * 187.30770 * 9 7 6 12 12 C 1.39110 * 120.00522 * 185.83125 * 11 9 7 13 13 C 1.39707 * 119.57881 * 175.68189 * 12 11 9 14 14 C 1.38645 * 119.49113 * 180.02562 * 13 12 11 15 15 C 1.38347 * 118.67442 * 0.02562 * 14 13 12 16 16 C 1.40591 * 119.13762 * 359.97438 * 15 14 13 17 17 C 1.41333 * 119.78997 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99968 * 8.48457 * 17 16 15 19 19 C 1.40031 * 120.00318 * 188.47528 * 17 16 15 20 20 N 1.30739 * 119.99669 * 6.87580 * 19 17 16 21 21 Si 1.86797 * 120.00255 * 186.87361 * 19 17 16 22 22 H 1.48495 * 109.47131 * 85.00365 * 21 19 17 23 23 H 1.48507 * 109.47236 * 205.00295 * 21 19 17 24 24 H 1.48498 * 109.47168 * 325.00137 * 21 19 17 25 25 N 1.31938 * 119.57802 * 355.66994 * 12 11 9 26 26 C 1.47510 * 122.47910 * 89.14372 * 6 5 3 27 27 C 1.53571 * 111.03152 * 318.62563 * 26 6 5 28 28 C 1.51540 * 109.58061 * 320.02441 * 27 26 6 29 29 O 1.38020 * 109.46848 * 64.99562 * 3 2 1 30 30 H 1.08992 * 109.47107 * 300.00015 * 1 2 3 31 31 H 1.08998 * 109.46744 * 60.00165 * 1 2 3 32 32 H 1.08995 * 109.46979 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47388 * 240.00178 * 2 1 3 34 34 H 1.09003 * 109.47178 * 120.00038 * 2 1 3 35 35 H 1.09001 * 109.22181 * 52.06537 * 5 3 2 36 36 H 1.09000 * 109.40764 * 292.27784 * 5 3 2 37 37 H 0.96999 * 119.99378 * 5.84174 * 11 9 7 38 38 H 1.07999 * 120.25394 * 359.73136 * 13 12 11 39 39 H 1.07999 * 120.66366 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.43129 * 180.02562 * 15 14 13 41 41 H 0.96999 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.08996 * 109.16624 * 79.02954 * 26 6 5 43 43 H 1.09005 * 109.16188 * 198.28128 * 26 6 5 44 44 H 1.08997 * 109.44964 * 80.05930 * 27 26 6 45 45 H 1.08997 * 109.45573 * 199.99165 * 27 26 6 46 46 H 1.09001 * 109.58860 * 211.17716 * 28 27 26 47 47 H 1.08995 * 109.59393 * 331.62086 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5777 1.4461 -0.1272 6 7 4.0528 2.8045 -0.3149 7 6 4.1798 3.2796 -1.5697 8 8 4.6843 4.3669 -1.7587 9 6 3.6997 2.4675 -2.7278 10 8 3.0773 1.4438 -2.5345 11 7 3.9574 2.8718 -3.9874 12 6 3.4086 2.1840 -5.0648 13 6 3.6068 2.6633 -6.3621 14 6 3.0586 1.9766 -7.4345 15 6 2.3264 0.8298 -7.1842 16 6 2.1626 0.3985 -5.8561 17 6 1.4168 -0.7709 -5.5845 18 1 1.0915 -1.4046 -6.3963 19 6 1.0997 -1.1081 -4.2629 20 7 1.3748 -0.2765 -3.2922 21 14 0.2838 -2.7458 -3.8867 22 1 1.3233 -3.7981 -3.7555 23 1 -0.4764 -2.6397 -2.6155 24 1 -0.6441 -3.1015 -4.9902 25 7 2.7078 1.0873 -4.8486 26 6 4.3964 3.6869 0.8162 27 6 3.3738 3.5484 1.9536 28 6 1.9792 3.4348 1.3716 29 8 1.6749 2.0596 1.1793 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8683 0.8381 -0.9840 36 1 4.0171 1.0296 0.7792 37 1 4.5258 3.6424 -4.1426 38 1 4.1786 3.5643 -6.5279 39 1 3.1996 2.3304 -8.4452 40 1 1.8870 0.2726 -7.9984 41 1 1.1549 -0.5099 -2.3768 42 1 5.3853 3.4213 1.1897 43 1 4.4098 4.7211 0.4720 44 1 3.5979 2.6550 2.5363 45 1 3.4275 4.4252 2.5988 46 1 1.2587 3.8756 2.0606 47 1 1.9389 3.9552 0.4148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890261851.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:40 Heat of formation + Delta-G solvation = -54.476377 kcal Electronic energy + Delta-G solvation = -33003.551600 eV Core-core repulsion = 28766.509452 eV Total energy + Delta-G solvation = -4237.042148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24761 -40.71849 -39.82930 -38.95488 -36.83109 -36.08355 -35.16720 -34.86720 -32.75337 -32.23909 -31.02366 -29.35000 -28.06225 -27.45284 -25.97964 -24.48094 -23.45492 -22.96328 -22.14098 -21.70979 -20.68729 -19.61662 -18.64457 -18.33908 -17.95352 -17.68745 -17.16439 -16.61788 -16.53153 -16.38628 -16.28797 -15.72407 -15.54453 -15.26418 -14.89618 -14.74300 -14.58618 -14.42337 -14.22767 -13.86164 -13.74282 -13.67981 -13.46467 -12.93435 -12.84530 -12.72624 -12.57933 -12.55322 -12.34668 -12.27263 -12.11812 -11.86797 -11.84551 -11.73059 -11.57081 -11.32930 -10.87339 -10.63786 -10.36337 -9.91942 -9.76751 -9.14435 -8.88242 -8.10722 -6.36321 0.32615 1.03620 1.27283 1.30869 1.43184 1.52045 1.54486 2.28817 2.29463 2.42034 2.72559 2.99282 3.31394 3.72800 3.81357 4.01561 4.03410 4.07005 4.14518 4.26731 4.32926 4.34499 4.43706 4.56612 4.63470 4.68805 4.70731 4.75850 4.82156 4.90866 4.92971 4.95754 4.99291 5.05083 5.08884 5.12068 5.26177 5.31294 5.35428 5.57340 5.64866 5.72138 5.86858 5.92645 6.13879 6.27523 6.49922 6.64334 6.71836 6.82567 7.07105 7.26958 8.25949 8.59447 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010219 B = 0.005406 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.354627 B = 5178.032650 C = 7573.905670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.118 3.882 4 H 0.023 0.977 5 C 0.072 3.928 6 N -0.575 5.575 7 C 0.506 3.494 8 O -0.545 6.545 9 C 0.454 3.546 10 O -0.401 6.401 11 N -0.633 5.633 12 C 0.350 3.650 13 C -0.345 4.345 14 C -0.033 4.033 15 C -0.324 4.324 16 C 0.244 3.756 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.025 3.975 20 N -0.691 5.691 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.264 1.264 24 H -0.260 1.260 25 N -0.501 5.501 26 C 0.102 3.898 27 C -0.151 4.151 28 C 0.067 3.933 29 O -0.393 6.393 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.422 0.578 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.284 0.716 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 4.701 13.157 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.058 3.942 4 H 0.041 0.959 5 C -0.051 4.051 6 N -0.308 5.308 7 C 0.289 3.711 8 O -0.424 6.424 9 C 0.233 3.767 10 O -0.265 6.265 11 N -0.283 5.283 12 C 0.111 3.889 13 C -0.371 4.371 14 C -0.057 4.057 15 C -0.347 4.347 16 C 0.119 3.881 17 C -0.492 4.492 18 H 0.100 0.900 19 C -0.202 4.202 20 N -0.312 5.312 21 Si 0.773 3.227 22 H -0.191 1.191 23 H -0.188 1.188 24 H -0.184 1.184 25 N -0.220 5.220 26 C -0.018 4.018 27 C -0.189 4.189 28 C -0.009 4.009 29 O -0.312 6.312 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.259 0.741 38 H 0.143 0.857 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.700 4.156 14.559 15.380 hybrid contribution 0.211 0.282 -1.603 1.641 sum 2.911 4.438 12.956 14.001 Atomic orbital electron populations 1.21609 0.95432 1.01438 1.01203 1.21467 0.96639 0.93679 1.02642 1.21523 0.92581 0.94366 0.85717 0.95878 1.22835 0.95945 0.81785 1.04575 1.47875 1.62934 1.14985 1.04960 1.20411 0.79523 0.86099 0.85116 1.90672 1.44015 1.22238 1.85431 1.20658 0.83914 0.87521 0.84643 1.91098 1.31920 1.20373 1.83126 1.43003 1.49577 1.32083 1.03638 1.18928 0.92688 0.91688 0.85555 1.20910 1.17638 1.07262 0.91257 1.21001 0.93279 0.93157 0.98246 1.21841 1.12744 1.02844 0.97298 1.18746 0.89881 0.92211 0.87244 1.19811 1.29247 1.06085 0.94051 0.89971 1.26726 0.96351 1.01078 0.96055 1.70344 1.26547 1.33427 1.00922 0.85672 0.79139 0.78925 0.78988 1.19149 1.18802 1.18433 1.68502 1.13408 1.06574 1.33564 1.22201 0.99703 0.94472 0.85416 1.22432 0.93559 1.05650 0.97291 1.22355 0.97399 0.81483 0.99692 1.86208 1.81294 1.25078 1.38632 0.91439 0.95063 0.92366 0.91127 0.89808 0.88618 0.88171 0.74056 0.85657 0.84677 0.87682 0.90117 0.89251 0.89616 0.89329 0.86276 0.87006 0.95560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.31 71.98 0.67 -3.57 16 2 C -0.11 -3.26 5.29 30.60 0.16 -3.10 16 3 C 0.12 3.68 1.93 31.03 0.06 3.74 16 4 H 0.02 0.93 7.10 -2.39 -0.02 0.91 16 5 C 0.07 2.08 4.37 87.07 0.38 2.46 16 6 N -0.58 -16.37 2.20 -820.68 -1.81 -18.17 16 7 C 0.51 17.59 7.67 87.24 0.67 18.26 16 8 O -0.54 -19.64 15.88 -3.25 -0.05 -19.69 16 9 C 0.45 18.68 7.59 87.24 0.66 19.34 16 10 O -0.40 -18.18 7.68 -3.27 -0.03 -18.20 16 11 N -0.63 -26.08 5.36 -309.71 -1.66 -27.74 16 12 C 0.35 16.82 7.43 133.30 0.99 17.81 16 13 C -0.35 -14.94 9.95 22.72 0.23 -14.72 16 14 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 15 C -0.32 -15.98 9.83 22.87 0.22 -15.76 16 16 C 0.24 13.49 6.51 40.20 0.26 13.75 16 17 C -0.46 -24.96 9.13 23.47 0.21 -24.75 16 18 H 0.08 4.23 7.86 -2.91 -0.02 4.21 16 19 C 0.02 1.26 5.47 85.29 0.47 1.72 16 20 N -0.69 -35.36 9.34 21.84 0.20 -35.16 16 21 Si 0.95 37.89 29.57 68.60 2.03 39.92 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 25 N -0.50 -27.27 5.78 -186.43 -1.08 -28.35 16 26 C 0.10 2.11 6.11 86.38 0.53 2.64 16 27 C -0.15 -2.40 5.78 30.31 0.18 -2.23 16 28 C 0.07 1.44 6.38 71.50 0.46 1.90 16 29 O -0.39 -10.62 8.99 -117.92 -1.06 -11.68 16 30 H 0.07 1.85 7.82 -2.39 -0.02 1.83 16 31 H 0.03 1.09 8.07 -2.39 -0.02 1.08 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 2.55 5.73 -2.38 -0.01 2.54 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 3.37 5.45 -2.39 -0.01 3.36 16 36 H 0.10 2.37 8.11 -2.39 -0.02 2.35 16 37 H 0.42 14.81 8.22 -92.71 -0.76 14.05 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 41 H 0.28 13.17 4.66 -92.71 -0.43 12.74 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.90 7.08 -2.38 -0.02 1.88 16 44 H 0.09 1.35 8.01 -2.39 -0.02 1.33 16 45 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.03 0.69 7.40 -2.39 -0.02 0.68 16 Total: -1.00 -65.37 369.41 3.51 -61.86 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: 0.58 Total: 40.90 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.37 Total: 16.31 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.34 Total: -109.42 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -1.14 Total: -49.57 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -65.37 3.51 -61.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890261851.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.383 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds