Wall clock time and date at job start Wed Apr 1 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47219 * 2 1 4 4 H 1.09008 * 109.51582 * 55.09865 * 3 2 1 5 5 C 1.53290 * 109.51511 * 175.25292 * 3 2 1 6 6 N 1.47150 * 108.38893 * 172.22761 * 5 3 2 7 7 C 1.34774 * 120.98454 * 129.44188 * 6 5 3 8 8 O 1.21358 * 120.00047 * 178.48317 * 7 6 5 9 9 C 1.49364 * 120.00212 * 358.48259 * 7 6 5 10 10 O 1.21357 * 119.99729 * 6.54426 * 9 7 6 11 11 N 1.34775 * 120.00358 * 186.54184 * 9 7 6 12 12 C 1.39110 * 120.00234 * 185.09669 * 11 9 7 13 13 C 1.39705 * 119.57677 * 174.67291 * 12 11 9 14 14 C 1.38660 * 119.49246 * 179.72815 * 13 12 11 15 15 C 1.38350 * 118.66400 * 0.53257 * 14 13 12 16 16 C 1.40585 * 119.14181 * 359.73269 * 15 14 13 17 17 C 1.41338 * 119.78639 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.40034 * 119.99659 * 179.97438 * 17 16 15 20 20 N 1.30734 * 120.00269 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99493 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47018 * 60.00468 * 21 19 17 23 23 H 1.48503 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47283 * 300.00166 * 21 19 17 25 25 N 1.31940 * 119.57808 * 354.94320 * 12 11 9 26 26 C 1.47158 * 118.03351 * 309.46463 * 6 5 3 27 27 H 1.08995 * 109.71060 * 170.27273 * 26 6 5 28 28 C 1.53005 * 109.67951 * 290.81280 * 26 6 5 29 29 C 1.53292 * 108.38339 * 50.53216 * 26 6 5 30 30 O 1.42959 * 109.22867 * 307.70009 * 29 26 6 31 31 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47029 * 299.99775 * 1 2 3 33 33 H 1.08998 * 109.46787 * 60.00204 * 1 2 3 34 34 H 1.08998 * 109.46787 * 119.99796 * 2 1 3 35 35 H 1.08994 * 109.47293 * 239.99774 * 2 1 3 36 36 H 1.09005 * 109.68247 * 291.94814 * 5 3 2 37 37 H 1.09001 * 109.68315 * 52.49712 * 5 3 2 38 38 H 0.97000 * 119.99459 * 5.09733 * 11 9 7 39 39 H 1.07993 * 120.25836 * 359.97438 * 13 12 11 40 40 H 1.07993 * 120.66510 * 180.24561 * 14 13 12 41 41 H 1.08005 * 120.42856 * 179.74926 * 15 14 13 42 42 H 0.97003 * 119.99819 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.46846 * 178.92521 * 28 26 6 44 44 H 1.08999 * 109.46798 * 298.92675 * 28 26 6 45 45 H 1.09001 * 109.47382 * 58.92802 * 28 26 6 46 46 H 1.09003 * 109.51422 * 187.77114 * 29 26 6 47 47 H 1.09007 * 109.51355 * 67.62581 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6072 1.9817 0.8427 5 6 3.5683 1.4452 0.1196 6 7 4.0463 2.8239 -0.0707 7 6 4.8946 3.3917 0.8093 8 8 5.2992 4.5202 0.6204 9 6 5.3370 2.6322 2.0169 10 8 5.0293 1.4654 2.1462 11 7 6.0778 3.2425 2.9630 12 6 6.5790 2.5099 4.0341 13 6 7.4372 3.1251 4.9488 14 6 7.9313 2.3948 6.0190 15 6 7.5645 1.0664 6.1417 16 6 6.7019 0.5032 5.1850 17 6 6.3180 -0.8524 5.2975 18 1 6.6874 -1.4521 6.1161 19 6 5.4586 -1.4177 4.3474 20 7 5.0118 -0.6918 3.3561 21 14 4.9506 -3.2092 4.4964 22 1 4.2461 -3.4182 5.7868 23 1 4.0441 -3.5616 3.3742 24 1 6.1582 -4.0720 4.4464 25 7 6.2420 1.2416 4.1701 26 6 3.5702 3.5644 -1.2498 27 1 3.8630 4.6112 -1.1694 28 6 4.1731 2.9566 -2.5180 29 6 2.0419 3.4584 -1.3027 30 8 1.6623 2.0825 -1.2213 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8599 1.0887 1.1075 37 1 3.9976 0.7989 -0.6459 38 1 6.2615 4.1927 2.8970 39 1 7.7107 4.1626 4.8257 40 1 8.5928 2.8524 6.7396 41 1 7.9358 0.4699 6.9619 42 1 4.4161 -1.0834 2.6982 43 1 3.8033 3.4955 -3.3903 44 1 5.2595 3.0338 -2.4767 45 1 3.8858 1.9077 -2.5902 46 1 1.6798 3.8811 -2.2399 47 1 1.6097 4.0055 -0.4648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890357165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:03 Heat of formation + Delta-G solvation = -37.163903 kcal Electronic energy + Delta-G solvation = -32111.789433 eV Core-core repulsion = 27875.498011 eV Total energy + Delta-G solvation = -4236.291422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84351 -39.35617 -38.28232 -37.36875 -35.31006 -34.52970 -33.89911 -33.12299 -31.48683 -30.43955 -29.30590 -28.40797 -26.49535 -25.83761 -24.65915 -23.96395 -22.27690 -21.47793 -21.05343 -20.01054 -19.13204 -17.98329 -17.03538 -16.97398 -16.44841 -16.28548 -15.76394 -15.23482 -15.00766 -14.82430 -14.71103 -14.53462 -13.96749 -13.89904 -13.74195 -13.65213 -13.33442 -12.97693 -12.85240 -12.79872 -12.32272 -12.13568 -12.07383 -11.92469 -11.74024 -11.32158 -11.22760 -11.15136 -11.06472 -10.96433 -10.76041 -10.73260 -10.56891 -10.40646 -10.09750 -10.03798 -9.88519 -9.15521 -8.65978 -8.54885 -8.09258 -7.36167 -7.13787 -6.29027 -4.50659 1.80152 2.55164 2.77200 3.02784 3.08837 3.11975 3.19902 3.65007 3.78821 3.84284 3.97229 4.57056 4.71846 4.76663 4.81295 4.96022 5.01582 5.09041 5.17278 5.33680 5.39208 5.43816 5.53958 5.61019 5.77149 5.82350 5.85642 5.90913 6.00904 6.01129 6.07101 6.09409 6.21485 6.32082 6.38312 6.42365 6.52603 6.73216 6.74238 7.10060 7.15224 7.23987 7.38285 7.47564 7.70684 7.76961 7.98149 8.08847 8.30778 8.55965 8.85166 8.94722 10.07050 10.34658 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.004490 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.030934 B = 6235.190797 C = 8575.880683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.061 0.939 5 C 0.023 3.977 6 N -0.581 5.581 7 C 0.510 3.490 8 O -0.535 6.535 9 C 0.473 3.527 10 O -0.378 6.378 11 N -0.634 5.634 12 C 0.366 3.634 13 C -0.347 4.347 14 C -0.036 4.036 15 C -0.299 4.299 16 C 0.272 3.728 17 C -0.423 4.423 18 H 0.083 0.917 19 C 0.062 3.938 20 N -0.665 5.665 21 Si 0.897 3.103 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.267 1.267 25 N -0.473 5.473 26 C 0.097 3.903 27 H 0.105 0.895 28 C -0.154 4.154 29 C 0.058 3.942 30 O -0.377 6.377 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.071 0.929 38 H 0.412 0.588 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.103 0.897 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 4.253 -9.610 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.022 3.978 4 H 0.079 0.921 5 C -0.098 4.098 6 N -0.316 5.316 7 C 0.293 3.707 8 O -0.412 6.412 9 C 0.251 3.749 10 O -0.244 6.244 11 N -0.281 5.281 12 C 0.128 3.872 13 C -0.373 4.373 14 C -0.060 4.060 15 C -0.322 4.322 16 C 0.147 3.853 17 C -0.453 4.453 18 H 0.101 0.899 19 C -0.166 4.166 20 N -0.284 5.284 21 Si 0.721 3.279 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.192 1.192 25 N -0.192 5.192 26 C -0.006 4.006 27 H 0.123 0.877 28 C -0.212 4.212 29 C -0.020 4.020 30 O -0.295 6.295 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.190 0.810 37 H 0.090 0.910 38 H 0.248 0.752 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.121 0.879 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.002 3.458 -10.622 13.741 hybrid contribution 0.644 0.415 0.647 1.003 sum -7.358 3.873 -9.975 12.986 Atomic orbital electron populations 1.21691 0.95312 1.01440 1.01977 1.21485 0.96505 0.93723 1.03444 1.22596 0.93911 0.94594 0.86670 0.92139 1.24071 0.93818 0.81446 1.10450 1.48070 1.44780 1.15621 1.23085 1.20697 0.79199 0.86368 0.84396 1.90686 1.55392 1.18801 1.76340 1.20140 0.82244 0.88413 0.84096 1.90749 1.46780 1.13353 1.73471 1.43005 1.50658 1.12526 1.21939 1.18538 0.91482 0.91151 0.86025 1.20514 1.13463 1.00242 1.03058 1.20591 0.96265 0.93959 0.95188 1.21665 1.09989 0.95845 1.04713 1.18337 0.87841 0.92893 0.86216 1.19556 1.23088 0.93994 1.08687 0.89890 1.26125 0.96082 0.99258 0.95182 1.70295 1.17695 1.34514 1.05896 0.86559 0.79270 0.83232 0.78795 1.19133 1.20246 1.19151 1.68617 1.26146 1.01429 1.23027 1.21965 0.94861 0.98253 0.85548 0.87668 1.21993 1.01078 1.02146 0.95940 1.22906 0.92672 0.83886 1.02544 1.87915 1.79718 1.23151 1.38764 0.92772 0.92958 0.92259 0.89595 0.91093 0.80970 0.91029 0.75190 0.88709 0.88329 0.88344 0.91739 0.91444 0.92326 0.91565 0.87875 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.81 37.16 0.36 -1.20 16 2 C -0.11 -1.36 5.65 -26.73 -0.15 -1.51 16 3 C 0.08 1.06 2.78 -26.58 -0.07 0.99 16 4 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 5 C 0.02 0.34 5.28 -3.54 -0.02 0.32 16 6 N -0.58 -8.81 2.71 -165.28 -0.45 -9.26 16 7 C 0.51 8.97 7.77 -11.63 -0.09 8.88 16 8 O -0.54 -9.85 15.98 5.49 0.09 -9.76 16 9 C 0.47 9.51 7.76 -11.63 -0.09 9.42 16 10 O -0.38 -8.40 8.80 5.49 0.05 -8.36 16 11 N -0.63 -12.81 5.36 -11.83 -0.06 -12.87 16 12 C 0.37 8.65 7.42 -155.09 -1.15 7.49 16 13 C -0.35 -7.60 9.96 -38.88 -0.39 -7.99 16 14 C -0.04 -0.78 10.15 -39.38 -0.40 -1.18 16 15 C -0.30 -7.20 9.83 -38.66 -0.38 -7.58 16 16 C 0.27 7.25 6.55 -85.00 -0.56 6.69 16 17 C -0.42 -10.95 9.14 -37.73 -0.34 -11.30 16 18 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 19 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 20 N -0.66 -16.56 8.99 55.55 0.50 -16.06 16 21 Si 0.90 17.98 29.56 -169.99 -5.02 12.95 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 N -0.47 -12.50 5.73 -10.28 -0.06 -12.56 16 26 C 0.10 1.20 3.23 -67.42 -0.22 0.98 16 27 H 0.11 1.33 7.09 -51.93 -0.37 0.96 16 28 C -0.15 -1.70 9.25 37.16 0.34 -1.35 16 29 C 0.06 0.63 6.36 37.31 0.24 0.87 16 30 O -0.38 -4.73 9.57 -35.23 -0.34 -5.07 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 7.82 -51.93 -0.41 0.23 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.17 3.09 3.96 -56.36 -0.22 2.87 16 37 H 0.07 1.05 7.64 -51.93 -0.40 0.66 16 38 H 0.41 7.18 8.21 -40.82 -0.33 6.84 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 42 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.78 7.20 -51.93 -0.37 0.40 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -29.17 379.95 -9.31 -38.48 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.72 Total: 11.82 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -3.01 Total: 4.95 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.07 Total: -50.75 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.20 Total: -23.19 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.17 -9.31 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.311 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds