Wall clock time and date at job start Wed Apr 1 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47219 * 2 1 4 4 H 1.09008 * 109.51582 * 55.09865 * 3 2 1 5 5 C 1.53290 * 109.51511 * 175.25292 * 3 2 1 6 6 N 1.47150 * 108.38893 * 172.22761 * 5 3 2 7 7 C 1.34774 * 120.98454 * 129.44188 * 6 5 3 8 8 O 1.21358 * 120.00047 * 178.48317 * 7 6 5 9 9 C 1.49364 * 120.00212 * 358.48259 * 7 6 5 10 10 O 1.21357 * 119.99729 * 6.54426 * 9 7 6 11 11 N 1.34775 * 120.00358 * 186.54184 * 9 7 6 12 12 C 1.39110 * 120.00234 * 185.09669 * 11 9 7 13 13 C 1.39705 * 119.57677 * 174.67291 * 12 11 9 14 14 C 1.38660 * 119.49246 * 179.72815 * 13 12 11 15 15 C 1.38350 * 118.66400 * 0.53257 * 14 13 12 16 16 C 1.40585 * 119.14181 * 359.73269 * 15 14 13 17 17 C 1.41338 * 119.78639 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00356 * 359.97438 * 17 16 15 19 19 C 1.40034 * 119.99659 * 179.97438 * 17 16 15 20 20 N 1.30734 * 120.00269 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99493 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47018 * 60.00468 * 21 19 17 23 23 H 1.48503 * 109.46747 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47283 * 300.00166 * 21 19 17 25 25 N 1.31940 * 119.57808 * 354.94320 * 12 11 9 26 26 C 1.47158 * 118.03351 * 309.46463 * 6 5 3 27 27 H 1.08995 * 109.71060 * 170.27273 * 26 6 5 28 28 C 1.53005 * 109.67951 * 290.81280 * 26 6 5 29 29 C 1.53292 * 108.38339 * 50.53216 * 26 6 5 30 30 O 1.42959 * 109.22867 * 307.70009 * 29 26 6 31 31 H 1.08998 * 109.47189 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47029 * 299.99775 * 1 2 3 33 33 H 1.08998 * 109.46787 * 60.00204 * 1 2 3 34 34 H 1.08998 * 109.46787 * 119.99796 * 2 1 3 35 35 H 1.08994 * 109.47293 * 239.99774 * 2 1 3 36 36 H 1.09005 * 109.68247 * 291.94814 * 5 3 2 37 37 H 1.09001 * 109.68315 * 52.49712 * 5 3 2 38 38 H 0.97000 * 119.99459 * 5.09733 * 11 9 7 39 39 H 1.07993 * 120.25836 * 359.97438 * 13 12 11 40 40 H 1.07993 * 120.66510 * 180.24561 * 14 13 12 41 41 H 1.08005 * 120.42856 * 179.74926 * 15 14 13 42 42 H 0.97003 * 119.99819 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.46846 * 178.92521 * 28 26 6 44 44 H 1.08999 * 109.46798 * 298.92675 * 28 26 6 45 45 H 1.09001 * 109.47382 * 58.92802 * 28 26 6 46 46 H 1.09003 * 109.51422 * 187.77114 * 29 26 6 47 47 H 1.09007 * 109.51355 * 67.62581 * 29 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6072 1.9817 0.8427 5 6 3.5683 1.4452 0.1196 6 7 4.0463 2.8239 -0.0707 7 6 4.8946 3.3917 0.8093 8 8 5.2992 4.5202 0.6204 9 6 5.3370 2.6322 2.0169 10 8 5.0293 1.4654 2.1462 11 7 6.0778 3.2425 2.9630 12 6 6.5790 2.5099 4.0341 13 6 7.4372 3.1251 4.9488 14 6 7.9313 2.3948 6.0190 15 6 7.5645 1.0664 6.1417 16 6 6.7019 0.5032 5.1850 17 6 6.3180 -0.8524 5.2975 18 1 6.6874 -1.4521 6.1161 19 6 5.4586 -1.4177 4.3474 20 7 5.0118 -0.6918 3.3561 21 14 4.9506 -3.2092 4.4964 22 1 4.2461 -3.4182 5.7868 23 1 4.0441 -3.5616 3.3742 24 1 6.1582 -4.0720 4.4464 25 7 6.2420 1.2416 4.1701 26 6 3.5702 3.5644 -1.2498 27 1 3.8630 4.6112 -1.1694 28 6 4.1731 2.9566 -2.5180 29 6 2.0419 3.4584 -1.3027 30 8 1.6623 2.0825 -1.2213 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 3.8599 1.0887 1.1075 37 1 3.9976 0.7989 -0.6459 38 1 6.2615 4.1927 2.8970 39 1 7.7107 4.1626 4.8257 40 1 8.5928 2.8524 6.7396 41 1 7.9358 0.4699 6.9619 42 1 4.4161 -1.0834 2.6982 43 1 3.8033 3.4955 -3.3903 44 1 5.2595 3.0338 -2.4767 45 1 3.8858 1.9077 -2.5902 46 1 1.6798 3.8811 -2.2399 47 1 1.6097 4.0055 -0.4648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890357165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:02 Heat of formation + Delta-G solvation = -54.018464 kcal Electronic energy + Delta-G solvation = -32112.520302 eV Core-core repulsion = 27875.498011 eV Total energy + Delta-G solvation = -4237.022291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20019 -40.79284 -39.72763 -38.97516 -36.63397 -35.92477 -35.15923 -34.78812 -32.52661 -32.25560 -31.09137 -29.53511 -27.69334 -27.38196 -26.13818 -25.02772 -23.80953 -23.12355 -22.30288 -21.41682 -20.49451 -19.59781 -18.52209 -18.35445 -17.89788 -17.55178 -17.06337 -16.54414 -16.34687 -16.28832 -16.26356 -15.90925 -15.59566 -15.31111 -15.14241 -14.71626 -14.66487 -14.47858 -14.07834 -13.92552 -13.77316 -13.71298 -13.27552 -12.90913 -12.87115 -12.83200 -12.74000 -12.57296 -12.31835 -12.30663 -12.16044 -12.00016 -11.88361 -11.76690 -11.61897 -11.49217 -11.16991 -10.91455 -10.19933 -9.92704 -9.73814 -9.12808 -8.93438 -8.08111 -6.40880 0.28127 1.02084 1.20241 1.27145 1.45196 1.54321 1.57337 2.26401 2.29364 2.34707 2.72227 2.98734 3.25058 3.61563 3.74320 3.95062 3.97901 4.01829 4.04702 4.20189 4.32010 4.35519 4.46733 4.57726 4.59273 4.63631 4.69027 4.72277 4.80092 4.84325 4.89354 4.94339 4.95255 5.06305 5.12683 5.16961 5.20971 5.24640 5.36632 5.42950 5.63363 5.75524 5.88776 5.92448 6.08383 6.13097 6.26602 6.45200 6.67123 6.79202 7.04883 7.24747 8.23889 8.56585 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.004490 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.030934 B = 6235.190797 C = 8575.880683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.089 3.911 4 H 0.051 0.949 5 C 0.027 3.973 6 N -0.574 5.574 7 C 0.515 3.485 8 O -0.545 6.545 9 C 0.464 3.536 10 O -0.401 6.401 11 N -0.629 5.629 12 C 0.347 3.653 13 C -0.343 4.343 14 C -0.033 4.033 15 C -0.322 4.322 16 C 0.239 3.761 17 C -0.460 4.460 18 H 0.085 0.915 19 C 0.019 3.981 20 N -0.689 5.689 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.267 1.267 24 H -0.266 1.266 25 N -0.501 5.501 26 C 0.092 3.908 27 H 0.106 0.894 28 C -0.147 4.147 29 C 0.058 3.942 30 O -0.377 6.377 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.148 0.852 37 H 0.074 0.926 38 H 0.424 0.576 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.275 0.725 43 H 0.098 0.902 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.139 0.861 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 4.799 -10.909 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C 0.031 3.969 4 H 0.069 0.931 5 C -0.094 4.094 6 N -0.307 5.307 7 C 0.298 3.702 8 O -0.424 6.424 9 C 0.243 3.757 10 O -0.267 6.267 11 N -0.278 5.278 12 C 0.109 3.891 13 C -0.369 4.369 14 C -0.057 4.057 15 C -0.345 4.345 16 C 0.114 3.886 17 C -0.490 4.490 18 H 0.103 0.897 19 C -0.207 4.207 20 N -0.308 5.308 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.191 1.191 24 H -0.191 1.191 25 N -0.221 5.221 26 C -0.010 4.010 27 H 0.124 0.876 28 C -0.205 4.205 29 C -0.020 4.020 30 O -0.295 6.295 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.164 0.836 37 H 0.092 0.908 38 H 0.262 0.738 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.156 0.844 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.896 4.038 -11.947 15.433 hybrid contribution 0.955 0.379 1.019 1.447 sum -7.942 4.417 -10.928 14.213 Atomic orbital electron populations 1.21648 0.94038 1.02243 1.01941 1.21477 0.97560 0.92784 1.03232 1.22447 0.92203 0.95428 0.86823 0.93120 1.23885 0.95338 0.81335 1.08872 1.48170 1.43548 1.15757 1.23275 1.20163 0.79920 0.86049 0.84112 1.90676 1.56220 1.18941 1.76585 1.20691 0.81804 0.88498 0.84731 1.90797 1.47269 1.14405 1.74225 1.42997 1.50521 1.12941 1.21360 1.18965 0.91951 0.90994 0.87193 1.20935 1.12056 1.01704 1.02170 1.21027 0.95930 0.93123 0.95642 1.21854 1.10471 0.97249 1.04914 1.18804 0.88891 0.93734 0.87194 1.19872 1.24774 0.94510 1.09865 0.89662 1.26876 0.95745 1.03457 0.94597 1.70414 1.17865 1.36262 1.06297 0.85456 0.78824 0.77636 0.78962 1.18849 1.19113 1.19054 1.68580 1.27179 1.02754 1.23568 1.22283 0.96113 0.97951 0.84686 0.87619 1.21964 1.00235 1.02045 0.96250 1.23108 0.91309 0.83126 1.04421 1.87921 1.79516 1.24049 1.38046 0.91591 0.93222 0.91991 0.90612 0.90525 0.83582 0.90796 0.73799 0.85461 0.84472 0.87464 0.91356 0.88363 0.93607 0.92235 0.84351 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.81 71.98 0.71 -2.11 16 2 C -0.11 -2.61 5.65 30.60 0.17 -2.44 16 3 C 0.09 2.31 2.78 30.69 0.09 2.39 16 4 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 5 C 0.03 0.81 5.28 86.35 0.46 1.27 16 6 N -0.57 -17.23 2.71 -795.19 -2.16 -19.39 16 7 C 0.51 18.21 7.77 87.24 0.68 18.88 16 8 O -0.55 -19.85 15.98 -3.27 -0.05 -19.90 16 9 C 0.46 19.15 7.76 87.24 0.68 19.83 16 10 O -0.40 -18.56 8.80 -3.27 -0.03 -18.59 16 11 N -0.63 -25.76 5.36 -309.71 -1.66 -27.42 16 12 C 0.35 16.60 7.42 133.30 0.99 17.59 16 13 C -0.34 -14.67 9.96 22.73 0.23 -14.45 16 14 C -0.03 -1.41 10.15 22.40 0.23 -1.19 16 15 C -0.32 -15.69 9.83 22.87 0.22 -15.46 16 16 C 0.24 13.15 6.55 40.20 0.26 13.41 16 17 C -0.46 -24.70 9.14 23.47 0.21 -24.49 16 18 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 19 C 0.02 0.97 5.50 85.29 0.47 1.44 16 20 N -0.69 -35.57 8.99 21.84 0.20 -35.37 16 21 Si 0.97 37.64 29.56 68.60 2.03 39.67 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 25 N -0.50 -27.33 5.73 -186.44 -1.07 -28.40 16 26 C 0.09 2.11 3.23 44.97 0.15 2.25 16 27 H 0.11 2.48 7.09 -2.39 -0.02 2.46 16 28 C -0.15 -2.93 9.25 71.98 0.67 -2.27 16 29 C 0.06 1.11 6.36 72.08 0.46 1.56 16 30 O -0.38 -8.70 9.57 -148.98 -1.43 -10.12 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.15 5.48 3.96 -72.66 -0.29 5.19 16 37 H 0.07 2.19 7.64 -2.39 -0.02 2.17 16 38 H 0.42 14.68 8.21 -92.71 -0.76 13.92 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.28 13.00 8.29 -92.71 -0.77 12.23 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.28 7.20 -2.39 -0.02 1.26 16 46 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -64.70 379.95 2.45 -62.25 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.04 Total: 41.03 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.66 Total: 16.24 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.69 Total: -110.58 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.51 Total: -48.61 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -64.70 2.45 -62.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.231 kcal (2) G-P(sol) polarization free energy of solvation -64.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds