Wall clock time and date at job start Wed Apr 1 2020 04:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47446 * 2 1 4 4 N 1.46505 * 109.47245 * 119.99538 * 2 1 3 5 5 C 1.36935 * 120.00380 * 301.90396 * 4 2 1 6 6 H 1.08005 * 119.99619 * 324.85669 * 5 4 2 7 7 C 1.38807 * 120.00669 * 144.85443 * 5 4 2 8 8 N 1.31610 * 120.00349 * 157.16391 * 7 5 4 9 9 Si 1.86801 * 119.99688 * 337.17038 * 7 5 4 10 10 H 1.48496 * 109.47225 * 95.35039 * 9 7 5 11 11 H 1.48494 * 109.47224 * 215.35402 * 9 7 5 12 12 H 1.48509 * 109.47087 * 335.35231 * 9 7 5 13 13 C 1.46505 * 119.99679 * 121.89967 * 4 2 1 14 14 C 1.52995 * 109.47116 * 90.00476 * 13 4 2 15 15 C 1.52993 * 109.47384 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99956 * 179.97438 * 16 15 14 18 18 O 1.21598 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.47515 * 119.99937 * 179.97438 * 17 16 15 20 20 C 1.40094 * 119.93137 * 0.02562 * 19 17 16 21 21 C 1.36292 * 120.38394 * 179.74240 * 20 19 17 22 22 C 1.39860 * 120.04187 * 0.23115 * 21 20 19 23 23 N 1.35816 * 133.51322 * 180.02562 * 22 21 20 24 24 C 1.30780 * 108.79516 * 179.97438 * 23 22 21 25 25 O 1.35104 * 124.91783 * 180.02562 * 24 23 22 26 26 O 1.34321 * 110.15833 * 0.02562 * 24 23 22 27 27 C 1.35315 * 108.12936 * 359.97438 * 26 24 23 28 28 C 1.38106 * 133.77096 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47120 * 305.32895 * 1 2 3 30 30 H 1.09005 * 109.47200 * 65.32616 * 1 2 3 31 31 H 1.09003 * 109.47274 * 185.33204 * 1 2 3 32 32 H 1.08994 * 109.47391 * 239.99589 * 2 1 3 33 33 H 1.08999 * 109.47776 * 175.18943 * 3 2 1 34 34 H 1.09008 * 109.46881 * 295.19150 * 3 2 1 35 35 H 1.09000 * 109.47103 * 55.18478 * 3 2 1 36 36 H 0.97003 * 120.00282 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47131 * 330.00349 * 13 4 2 38 38 H 1.09008 * 109.46414 * 210.00123 * 13 4 2 39 39 H 1.09006 * 109.47398 * 59.99310 * 14 13 4 40 40 H 1.09001 * 109.47377 * 299.99853 * 14 13 4 41 41 H 1.09006 * 109.47343 * 59.99366 * 15 14 13 42 42 H 1.09008 * 109.46868 * 299.99881 * 15 14 13 43 43 H 0.96995 * 119.99733 * 0.02562 * 16 15 14 44 44 H 1.08004 * 119.81140 * 0.02562 * 20 19 17 45 45 H 1.07995 * 119.98088 * 180.25756 * 21 20 19 46 46 H 0.96698 * 114.00053 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.17633 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6557 -0.2458 2.4396 6 1 1.5323 0.8119 2.6200 7 6 1.4467 -1.1543 3.4681 8 7 1.5442 -0.7637 4.7211 9 14 1.0272 -2.9313 3.0736 10 1 2.2672 -3.7482 3.0907 11 1 0.0770 -3.4527 4.0886 12 1 0.4039 -3.0058 1.7277 13 6 2.8946 -1.8569 1.0622 14 6 4.3542 -1.3987 1.0432 15 6 5.2694 -2.6168 0.9039 16 7 6.6670 -2.1780 0.8851 17 6 7.6568 -3.0856 0.7695 18 8 7.3897 -4.2686 0.6813 19 6 9.0641 -2.6437 0.7500 20 6 9.3702 -1.2804 0.8522 21 6 10.6673 -0.8624 0.8404 22 6 11.7025 -1.7952 0.7209 23 7 13.0560 -1.6901 0.6803 24 6 13.5682 -2.8871 0.5576 25 8 14.8896 -3.1593 0.4859 26 8 12.5901 -3.8067 0.5132 27 6 11.4033 -3.1643 0.6127 28 6 10.0877 -3.5842 0.6239 29 1 -0.3633 0.5943 0.8384 30 1 -0.3634 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0955 32 1 1.8933 -0.5139 -0.8899 33 1 3.1266 1.4438 0.0862 34 1 1.7487 1.9309 -0.9300 35 1 1.6080 1.9806 0.8437 36 1 1.3978 -1.3985 5.4398 37 1 2.6654 -2.3787 0.1331 38 1 2.7358 -2.5294 1.9054 39 1 4.5834 -0.8768 1.9724 40 1 4.5130 -0.7263 0.2002 41 1 5.0403 -3.1391 -0.0251 42 1 5.1105 -3.2890 1.7473 43 1 6.8801 -1.2345 0.9565 44 1 8.5738 -0.5568 0.9455 45 1 10.8960 0.1898 0.9238 46 1 15.4555 -2.3766 0.5330 47 1 9.8524 -4.6350 0.5407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267340571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:38 Heat of formation + Delta-G solvation = -7.170534 kcal Electronic energy + Delta-G solvation = -29418.668644 eV Core-core repulsion = 25183.677832 eV Total energy + Delta-G solvation = -4234.990812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -43.79267 -40.16398 -38.87443 -37.78494 -37.11554 -35.24851 -35.01345 -32.64865 -31.91803 -31.22094 -30.25687 -29.01039 -26.34242 -25.68539 -24.35734 -24.08368 -23.18075 -22.45163 -21.35809 -20.99809 -19.50441 -19.44383 -18.73663 -18.16539 -17.73062 -16.76368 -16.39037 -15.86482 -15.73751 -15.22213 -15.10233 -14.87109 -14.49638 -14.41551 -14.32188 -13.94138 -13.70203 -13.38337 -13.28121 -13.05895 -12.88934 -12.37161 -12.21442 -12.04537 -11.90394 -11.83400 -11.48274 -11.41508 -11.18722 -11.04680 -10.83130 -10.74647 -10.46071 -10.44260 -10.08870 -9.94379 -9.69257 -9.39361 -9.37246 -9.08264 -8.69221 -8.49254 -6.87649 -5.99301 -3.38152 0.00581 0.71452 1.03447 1.72650 2.66213 2.88332 3.17209 3.31403 3.43366 3.48581 3.51908 3.87800 4.23524 4.42267 4.52019 4.55571 4.67799 4.79272 4.84587 5.09928 5.31225 5.43902 5.45127 5.50033 5.56408 5.73123 5.75411 5.76810 5.80043 5.97291 5.99177 6.02194 6.15079 6.18155 6.29075 6.30474 6.33665 6.49032 6.53256 6.61935 6.68521 6.72837 6.87607 7.05284 7.06987 7.13296 7.45058 8.04570 8.11544 8.38430 8.99309 9.72694 10.11882 11.16380 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.001968 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.917497 B =14221.815235 C =14728.172516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.259 4.259 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.146 4.146 15 C 0.117 3.883 16 N -0.715 5.715 17 C 0.558 3.442 18 O -0.536 6.536 19 C -0.114 4.114 20 C -0.076 4.076 21 C -0.075 4.075 22 C 0.074 3.926 23 N -0.526 5.526 24 C 0.457 3.543 25 O -0.413 6.413 26 O -0.196 6.196 27 C -0.010 4.010 28 C -0.016 4.016 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.401 0.599 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.443 0.557 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.804 0.005 -10.722 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.542 5.542 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.187 4.187 15 C -0.006 4.006 16 N -0.366 5.366 17 C 0.344 3.656 18 O -0.415 6.415 19 C -0.118 4.118 20 C -0.096 4.096 21 C -0.094 4.094 22 C -0.039 4.039 23 N -0.277 5.277 24 C 0.209 3.791 25 O -0.214 6.214 26 O -0.090 6.090 27 C -0.058 4.058 28 C -0.036 4.036 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.236 0.764 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.303 0.697 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 21.820 -1.014 -10.630 24.292 hybrid contribution 0.087 -0.791 0.058 0.798 sum 21.907 -1.805 -10.572 24.391 Atomic orbital electron populations 1.22119 0.97658 1.01372 0.99949 1.20396 0.92511 0.92234 0.88894 1.22159 1.00652 0.98341 1.00019 1.44239 1.52353 1.33117 1.02584 1.18671 1.42551 0.93134 0.84386 0.90173 1.25402 0.98511 0.97645 0.95072 1.69863 1.50387 1.35426 0.98552 0.87007 0.77834 0.86804 0.77875 1.21381 1.23246 1.19472 1.21075 0.87947 0.90324 0.99145 1.22440 0.97122 0.96215 1.02908 1.21560 0.78449 0.98467 1.02168 1.46007 1.06859 1.10157 1.73624 1.17895 0.84531 0.85987 0.77159 1.90809 1.84237 1.16594 1.49823 1.19698 0.93177 0.93269 1.05648 1.20980 0.96662 0.94697 0.97240 1.19921 0.89415 0.99362 1.00742 1.19659 0.89965 0.92699 1.01575 1.71177 1.08061 1.19727 1.28705 1.22326 0.84668 0.80707 0.91408 1.84659 1.07872 1.40002 1.88897 1.84393 1.13395 1.35511 1.75736 1.19768 0.85382 0.91219 1.09475 1.19841 0.85428 1.01649 0.96650 0.92090 0.94505 0.93483 0.93264 0.93456 0.94408 0.92484 0.92795 0.94084 0.92760 0.90412 0.92069 0.91557 0.91275 0.76358 0.83754 0.83683 0.69662 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.04 37.15 0.34 -2.42 16 2 C 0.17 3.06 3.36 -67.93 -0.23 2.83 16 3 C -0.15 -2.56 9.11 37.16 0.34 -2.22 16 4 N -0.60 -13.04 2.06 -165.66 -0.34 -13.38 16 5 C -0.26 -6.71 8.74 -15.06 -0.13 -6.84 16 6 H 0.08 2.26 7.17 -52.48 -0.38 1.89 16 7 C 0.03 0.93 5.31 -17.44 -0.09 0.84 16 8 N -0.90 -26.61 13.97 55.49 0.78 -25.83 16 9 Si 0.87 21.71 24.97 -169.99 -4.24 17.47 16 10 H -0.29 -6.92 6.66 56.52 0.38 -6.55 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.81 4.49 -4.04 -0.02 2.79 16 14 C -0.15 -2.39 5.65 -26.74 -0.15 -2.54 16 15 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 16 N -0.72 -8.95 5.50 -61.35 -0.34 -9.28 16 17 C 0.56 7.61 7.76 -12.48 -0.10 7.51 16 18 O -0.54 -9.26 16.33 5.28 0.09 -9.17 16 19 C -0.11 -1.26 5.88 -104.92 -0.62 -1.87 16 20 C -0.08 -0.64 9.46 -39.59 -0.37 -1.02 16 21 C -0.08 -0.64 10.03 -39.68 -0.40 -1.04 16 22 C 0.07 0.77 7.23 -84.62 -0.61 0.16 16 23 N -0.53 -5.16 11.36 -12.72 -0.14 -5.31 16 24 C 0.46 4.05 9.54 52.31 0.50 4.55 16 25 O -0.41 -2.10 13.62 -40.31 -0.55 -2.64 16 26 O -0.20 -2.14 10.79 -20.52 -0.22 -2.36 16 27 C -0.01 -0.11 7.41 -38.76 -0.29 -0.39 16 28 C -0.02 -0.18 9.60 -39.13 -0.38 -0.55 16 29 H 0.06 1.20 7.80 -51.93 -0.40 0.79 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.06 1.05 7.25 -51.93 -0.38 0.68 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.05 1.22 2.97 -51.92 -0.15 1.06 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.40 3.88 6.47 -40.82 -0.26 3.61 16 44 H 0.14 0.86 6.37 -52.48 -0.33 0.52 16 45 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.44 -0.20 9.06 45.56 0.41 0.21 16 47 H 0.15 1.68 7.64 -52.49 -0.40 1.28 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -34.03 389.67 -7.02 -41.04 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.68 Total: 2.10 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -2.23 Total: 1.50 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.05 Total: -53.80 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.68 Total: -14.18 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.24 Total: 17.47 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.03 -7.02 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267340571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.873 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds