Wall clock time and date at job start Wed Apr 1 2020 04:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47446 * 2 1 4 4 N 1.46505 * 109.47245 * 119.99538 * 2 1 3 5 5 C 1.36935 * 120.00380 * 301.90396 * 4 2 1 6 6 H 1.08005 * 119.99619 * 324.85669 * 5 4 2 7 7 C 1.38807 * 120.00669 * 144.85443 * 5 4 2 8 8 N 1.31610 * 120.00349 * 157.16391 * 7 5 4 9 9 Si 1.86801 * 119.99688 * 337.17038 * 7 5 4 10 10 H 1.48496 * 109.47225 * 95.35039 * 9 7 5 11 11 H 1.48494 * 109.47224 * 215.35402 * 9 7 5 12 12 H 1.48509 * 109.47087 * 335.35231 * 9 7 5 13 13 C 1.46505 * 119.99679 * 121.89967 * 4 2 1 14 14 C 1.52995 * 109.47116 * 90.00476 * 13 4 2 15 15 C 1.52993 * 109.47384 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.34780 * 119.99956 * 179.97438 * 16 15 14 18 18 O 1.21598 * 119.99995 * 359.97438 * 17 16 15 19 19 C 1.47515 * 119.99937 * 179.97438 * 17 16 15 20 20 C 1.40094 * 119.93137 * 0.02562 * 19 17 16 21 21 C 1.36292 * 120.38394 * 179.74240 * 20 19 17 22 22 C 1.39860 * 120.04187 * 0.23115 * 21 20 19 23 23 N 1.35816 * 133.51322 * 180.02562 * 22 21 20 24 24 C 1.30780 * 108.79516 * 179.97438 * 23 22 21 25 25 O 1.35104 * 124.91783 * 180.02562 * 24 23 22 26 26 O 1.34321 * 110.15833 * 0.02562 * 24 23 22 27 27 C 1.35315 * 108.12936 * 359.97438 * 26 24 23 28 28 C 1.38106 * 133.77096 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.47120 * 305.32895 * 1 2 3 30 30 H 1.09005 * 109.47200 * 65.32616 * 1 2 3 31 31 H 1.09003 * 109.47274 * 185.33204 * 1 2 3 32 32 H 1.08994 * 109.47391 * 239.99589 * 2 1 3 33 33 H 1.08999 * 109.47776 * 175.18943 * 3 2 1 34 34 H 1.09008 * 109.46881 * 295.19150 * 3 2 1 35 35 H 1.09000 * 109.47103 * 55.18478 * 3 2 1 36 36 H 0.97003 * 120.00282 * 179.97438 * 8 7 5 37 37 H 1.08998 * 109.47131 * 330.00349 * 13 4 2 38 38 H 1.09008 * 109.46414 * 210.00123 * 13 4 2 39 39 H 1.09006 * 109.47398 * 59.99310 * 14 13 4 40 40 H 1.09001 * 109.47377 * 299.99853 * 14 13 4 41 41 H 1.09006 * 109.47343 * 59.99366 * 15 14 13 42 42 H 1.09008 * 109.46868 * 299.99881 * 15 14 13 43 43 H 0.96995 * 119.99733 * 0.02562 * 16 15 14 44 44 H 1.08004 * 119.81140 * 0.02562 * 20 19 17 45 45 H 1.07995 * 119.98088 * 180.25756 * 21 20 19 46 46 H 0.96698 * 114.00053 * 359.97438 * 25 24 23 47 47 H 1.08001 * 120.17633 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.6557 -0.2458 2.4396 6 1 1.5323 0.8119 2.6200 7 6 1.4467 -1.1543 3.4681 8 7 1.5442 -0.7637 4.7211 9 14 1.0272 -2.9313 3.0736 10 1 2.2672 -3.7482 3.0907 11 1 0.0770 -3.4527 4.0886 12 1 0.4039 -3.0058 1.7277 13 6 2.8946 -1.8569 1.0622 14 6 4.3542 -1.3987 1.0432 15 6 5.2694 -2.6168 0.9039 16 7 6.6670 -2.1780 0.8851 17 6 7.6568 -3.0856 0.7695 18 8 7.3897 -4.2686 0.6813 19 6 9.0641 -2.6437 0.7500 20 6 9.3702 -1.2804 0.8522 21 6 10.6673 -0.8624 0.8404 22 6 11.7025 -1.7952 0.7209 23 7 13.0560 -1.6901 0.6803 24 6 13.5682 -2.8871 0.5576 25 8 14.8896 -3.1593 0.4859 26 8 12.5901 -3.8067 0.5132 27 6 11.4033 -3.1643 0.6127 28 6 10.0877 -3.5842 0.6239 29 1 -0.3633 0.5943 0.8384 30 1 -0.3634 0.4290 -0.9339 31 1 -0.3634 -1.0232 0.0955 32 1 1.8933 -0.5139 -0.8899 33 1 3.1266 1.4438 0.0862 34 1 1.7487 1.9309 -0.9300 35 1 1.6080 1.9806 0.8437 36 1 1.3978 -1.3985 5.4398 37 1 2.6654 -2.3787 0.1331 38 1 2.7358 -2.5294 1.9054 39 1 4.5834 -0.8768 1.9724 40 1 4.5130 -0.7263 0.2002 41 1 5.0403 -3.1391 -0.0251 42 1 5.1105 -3.2890 1.7473 43 1 6.8801 -1.2345 0.9565 44 1 8.5738 -0.5568 0.9455 45 1 10.8960 0.1898 0.9238 46 1 15.4555 -2.3766 0.5330 47 1 9.8524 -4.6350 0.5407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267340571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:37 Heat of formation + Delta-G solvation = -35.062600 kcal Electronic energy + Delta-G solvation = -29419.878135 eV Core-core repulsion = 25183.677832 eV Total energy + Delta-G solvation = -4236.200303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.52256 -41.16939 -39.45852 -38.81107 -38.47110 -36.48398 -35.75744 -34.28916 -33.57000 -31.98163 -31.43159 -30.27060 -27.74100 -27.15043 -25.55422 -24.90642 -24.49719 -23.21783 -22.68759 -21.97941 -21.12591 -20.11111 -19.60767 -18.93520 -18.45036 -18.36932 -17.48381 -17.24843 -16.97716 -16.59892 -16.38918 -15.81369 -15.50643 -15.40186 -15.11149 -14.94958 -14.82477 -14.74050 -14.68641 -14.06352 -13.98565 -13.94143 -13.65457 -13.48347 -13.28531 -12.86547 -12.75977 -12.61464 -12.55319 -12.30983 -12.19439 -12.13670 -11.97250 -11.79316 -11.65140 -11.37582 -11.22020 -11.13637 -10.51617 -10.21423 -10.09471 -9.45192 -8.70709 -8.11630 -5.44139 -0.77697 -0.00924 0.42436 0.96056 1.32567 1.44267 1.52466 1.76597 1.99242 2.35397 2.46949 2.58782 3.11622 3.17410 3.38273 3.56401 3.64186 3.85097 3.89386 4.09699 4.11271 4.22601 4.34065 4.42974 4.49888 4.56244 4.62643 4.74290 4.76177 4.79407 4.79929 4.88603 4.99970 5.02474 5.04965 5.13166 5.19672 5.24004 5.26153 5.30681 5.35529 5.48659 5.62062 5.69129 5.84239 6.04511 6.29921 6.45578 6.47035 7.08746 7.10439 7.76376 8.15906 9.08441 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018540 B = 0.001968 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.917497 B =14221.815235 C =14728.172516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 C -0.144 4.144 4 N -0.611 5.611 5 C -0.225 4.225 6 H 0.049 0.951 7 C -0.023 4.023 8 N -0.951 5.951 9 Si 0.929 3.071 10 H -0.281 1.281 11 H -0.321 1.321 12 H -0.259 1.259 13 C 0.131 3.869 14 C -0.127 4.127 15 C 0.126 3.874 16 N -0.704 5.704 17 C 0.560 3.440 18 O -0.579 6.579 19 C -0.124 4.124 20 C -0.062 4.062 21 C -0.071 4.071 22 C 0.067 3.933 23 N -0.535 5.535 24 C 0.465 3.535 25 O -0.403 6.403 26 O -0.214 6.214 27 C -0.027 4.027 28 C -0.024 4.024 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.257 0.743 37 H 0.067 0.933 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.417 0.583 44 H 0.174 0.826 45 H 0.173 0.827 46 H 0.464 0.536 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.331 1.115 -13.376 26.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.334 5.334 5 C -0.355 4.355 6 H 0.067 0.933 7 C -0.218 4.218 8 N -0.597 5.597 9 Si 0.761 3.239 10 H -0.208 1.208 11 H -0.251 1.251 12 H -0.183 1.183 13 C 0.006 3.994 14 C -0.167 4.167 15 C 0.002 3.998 16 N -0.356 5.356 17 C 0.348 3.652 18 O -0.461 6.461 19 C -0.128 4.128 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.046 4.046 23 N -0.286 5.286 24 C 0.217 3.783 25 O -0.208 6.208 26 O -0.108 6.108 27 C -0.076 4.076 28 C -0.043 4.043 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.255 0.745 44 H 0.191 0.809 45 H 0.190 0.810 46 H 0.330 0.670 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.396 0.138 -13.341 26.932 hybrid contribution -0.256 -1.051 0.784 1.337 sum 23.139 -0.914 -12.556 26.343 Atomic orbital electron populations 1.22080 0.97574 1.00252 1.00800 1.20704 0.92685 0.93126 0.88364 1.22050 1.00625 0.97042 1.00574 1.44401 1.53198 1.33609 1.02172 1.18518 1.39423 0.91632 0.85971 0.93303 1.25891 1.00057 1.00898 0.94986 1.69978 1.53755 1.36454 0.99468 0.86097 0.77274 0.83216 0.77363 1.20845 1.25069 1.18317 1.21183 0.89662 0.89386 0.99198 1.22143 0.95032 0.96691 1.02863 1.21297 0.79530 0.97420 1.01586 1.45801 1.05751 1.10966 1.73082 1.18228 0.85558 0.85376 0.76076 1.90786 1.84970 1.18429 1.51890 1.19492 0.91380 0.94484 1.07451 1.21232 0.97587 0.93811 0.95564 1.20248 0.88764 1.00367 0.99643 1.20057 0.90710 0.92734 1.01088 1.71206 1.07714 1.19942 1.29756 1.22582 0.85499 0.80147 0.90049 1.84694 1.06357 1.41709 1.88063 1.84360 1.13875 1.36420 1.76178 1.19789 0.85355 0.91813 1.10642 1.19805 0.85942 1.01451 0.97143 0.94719 0.90861 0.94884 0.90162 0.93069 0.91091 0.95254 0.93360 0.91454 0.95556 0.92614 0.89405 0.90734 0.93724 0.74492 0.80861 0.80968 0.67010 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.04 71.98 0.65 -4.38 16 2 C 0.16 5.28 3.36 44.99 0.15 5.43 16 3 C -0.14 -4.41 9.11 71.98 0.66 -3.75 16 4 N -0.61 -25.55 2.06 -678.03 -1.40 -26.95 16 5 C -0.23 -11.78 8.74 84.03 0.73 -11.05 16 6 H 0.05 2.85 7.17 -2.91 -0.02 2.83 16 7 C -0.02 -1.29 5.31 84.86 0.45 -0.84 16 8 N -0.95 -58.24 13.97 21.65 0.30 -57.93 16 9 Si 0.93 45.85 24.97 68.60 1.71 47.56 16 10 H -0.28 -13.43 6.66 99.48 0.66 -12.76 16 11 H -0.32 -16.55 7.11 99.48 0.71 -15.84 16 12 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.13 4.94 4.49 86.38 0.39 5.32 16 14 C -0.13 -3.86 5.65 30.59 0.17 -3.69 16 15 C 0.13 3.57 5.67 86.38 0.49 4.06 16 16 N -0.70 -16.29 5.50 -466.27 -2.57 -18.85 16 17 C 0.56 14.80 7.76 86.69 0.67 15.47 16 18 O -0.58 -20.17 16.33 -4.02 -0.07 -20.24 16 19 C -0.12 -2.60 5.88 -20.06 -0.12 -2.72 16 20 C -0.06 -0.89 9.46 22.27 0.21 -0.68 16 21 C -0.07 -1.02 10.03 22.21 0.22 -0.80 16 22 C 0.07 1.29 7.23 39.49 0.29 1.58 16 23 N -0.53 -9.57 11.36 -422.42 -4.80 -14.37 16 24 C 0.47 7.62 9.54 130.40 1.24 8.87 16 25 O -0.40 -3.32 13.62 -61.51 -0.84 -4.15 16 26 O -0.21 -4.58 10.79 9.33 0.10 -4.48 16 27 C -0.03 -0.60 7.41 22.80 0.17 -0.43 16 28 C -0.02 -0.53 9.60 22.56 0.22 -0.31 16 29 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 2.27 7.78 -2.39 -0.02 2.25 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.03 1.04 7.25 -2.39 -0.02 1.02 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.07 2.19 7.90 -2.39 -0.02 2.17 16 38 H 0.03 1.16 2.97 -2.38 -0.01 1.15 16 39 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 42 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.42 6.83 6.47 -92.71 -0.60 6.23 16 44 H 0.17 1.37 6.37 -2.91 -0.02 1.35 16 45 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.46 -1.52 9.06 -74.06 -0.67 -2.19 16 47 H 0.14 3.34 7.64 -2.91 -0.02 3.32 16 Total: -1.00 -76.82 389.67 -1.24 -78.06 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -0.29 Total: 9.28 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.60 Total: 12.08 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -8.46 Total: -118.10 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.80 Total: -28.88 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.71 Total: 47.56 kcal Total: -76.82 -1.24 -78.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267340571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.995 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds