Wall clock time and date at job start Wed Apr 1 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46921 * 2 1 4 4 H 1.09000 * 109.47296 * 304.99689 * 3 2 1 5 5 N 1.46502 * 109.47239 * 65.00189 * 3 2 1 6 6 C 1.34774 * 119.99838 * 274.99478 * 5 3 2 7 7 O 1.21353 * 120.00124 * 0.02562 * 6 5 3 8 8 C 1.49450 * 120.00149 * 179.97438 * 6 5 3 9 9 O 1.21341 * 119.99925 * 0.02562 * 8 6 5 10 10 N 1.34774 * 119.99780 * 180.02562 * 8 6 5 11 11 C 1.47022 * 125.65120 * 359.96084 * 10 8 6 12 12 C 1.54323 * 107.26888 * 181.09329 * 11 10 8 13 13 C 1.55158 * 102.94477 * 22.19302 * 12 11 10 14 14 O 1.42903 * 111.00510 * 82.57207 * 13 12 11 15 15 C 1.50697 * 111.03748 * 206.40625 * 13 12 11 16 16 H 1.08001 * 120.00221 * 117.68052 * 15 13 12 17 17 C 1.37875 * 120.00399 * 297.68120 * 15 13 12 18 18 N 1.31515 * 120.00351 * 184.89487 * 17 15 13 19 19 Si 1.86808 * 119.99660 * 4.89357 * 17 15 13 20 20 H 1.48501 * 109.47151 * 84.75876 * 19 17 15 21 21 H 1.48501 * 109.46747 * 204.75910 * 19 17 15 22 22 H 1.48499 * 109.47163 * 324.75722 * 19 17 15 23 23 C 1.47431 * 125.64496 * 180.02562 * 10 8 6 24 24 C 1.50701 * 109.47117 * 184.99906 * 3 2 1 25 25 C 1.38656 * 120.78974 * 279.72113 * 24 3 2 26 26 C 1.38207 * 119.16168 * 179.79690 * 25 24 3 27 27 N 1.31871 * 120.76495 * 0.48359 * 26 25 24 28 28 C 1.31869 * 121.72084 * 359.74526 * 27 26 25 29 29 C 1.38197 * 120.77132 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.46912 * 299.99829 * 1 2 3 31 31 H 1.08996 * 109.47043 * 60.00204 * 1 2 3 32 32 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47322 * 240.00082 * 2 1 3 34 34 H 1.09005 * 109.46841 * 119.99917 * 2 1 3 35 35 H 0.97001 * 120.00167 * 95.00072 * 5 3 2 36 36 H 1.09000 * 109.88255 * 300.50700 * 11 10 8 37 37 H 1.08992 * 109.88199 * 61.67669 * 11 10 8 38 38 H 1.09003 * 110.72503 * 263.82903 * 12 11 10 39 39 H 1.09003 * 110.72034 * 140.55453 * 12 11 10 40 40 H 0.96698 * 114.00062 * 186.35118 * 14 13 12 41 41 H 0.96998 * 119.99767 * 179.97438 * 18 17 15 42 42 H 1.08996 * 110.36542 * 36.99320 * 23 10 8 43 43 H 1.09006 * 110.45807 * 274.72062 * 23 10 8 44 44 H 1.08004 * 120.41620 * 359.97438 * 25 24 3 45 45 H 1.08000 * 119.61719 * 180.25144 * 26 25 24 46 46 H 1.08004 * 119.61372 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.42005 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4352 2.6644 1.3670 7 8 -0.3400 2.6319 0.4338 8 6 0.0395 3.3321 2.6441 9 8 0.8145 3.3642 3.5773 10 7 -1.1779 3.8985 2.7593 11 6 -2.2096 3.9330 1.7124 12 6 -3.4170 4.7054 2.2843 13 6 -2.7823 5.5517 3.4194 14 8 -2.1954 6.7468 2.9004 15 6 -3.7961 5.8711 4.4876 16 1 -3.6511 5.5100 5.4951 17 6 -4.9088 6.6244 4.1789 18 7 -5.7435 6.9845 5.1293 19 14 -5.2309 7.1335 2.4106 20 1 -5.9441 6.0401 1.7028 21 1 -6.0657 8.3615 2.3934 22 1 -3.9389 7.4035 1.7301 23 6 -1.6953 4.5875 3.9557 24 6 3.5419 1.4443 -0.1238 25 6 4.3455 1.2100 0.9816 26 6 5.7191 1.2153 0.8289 27 7 6.2660 1.4489 -0.3481 28 6 5.5331 1.6801 -1.4196 29 6 4.1532 1.6861 -1.3446 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.2719 2.1232 1.9978 36 1 -1.8256 4.4456 0.8304 37 1 -2.5084 2.9175 1.4529 38 1 -4.1602 4.0168 2.6862 39 1 -3.8581 5.3496 1.5236 40 1 -1.7028 7.2597 3.5556 41 1 -6.5261 7.5148 4.9121 42 1 -0.8987 5.1480 4.4448 43 1 -2.1339 3.8696 4.6489 44 1 3.9035 1.0230 1.9491 45 1 6.3519 1.0296 1.6842 46 1 6.0169 1.8679 -2.3668 47 1 3.5584 1.8757 -2.2259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328277986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:56 Heat of formation + Delta-G solvation = -88.972664 kcal Electronic energy + Delta-G solvation = -30921.007742 eV Core-core repulsion = 26682.469723 eV Total energy + Delta-G solvation = -4238.538019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.12868 -41.24007 -40.21835 -39.05623 -37.49128 -36.18440 -34.51862 -33.62445 -33.02390 -32.14859 -32.11289 -30.12558 -28.40146 -27.49332 -25.28444 -24.51299 -23.69955 -23.62932 -21.82137 -21.58881 -21.12428 -19.53581 -18.95285 -18.23293 -17.82796 -17.39634 -17.30081 -16.88402 -16.66139 -16.50046 -16.41001 -16.20342 -15.67132 -15.12798 -15.08547 -14.82077 -14.73458 -14.62069 -14.54470 -14.22773 -14.19150 -13.87090 -13.68445 -13.38888 -13.15463 -12.86662 -12.81092 -12.62175 -12.50348 -12.38029 -12.36827 -12.21803 -11.90298 -11.86066 -10.98260 -10.84171 -10.80452 -10.61010 -10.53196 -10.41768 -10.22639 -10.10971 -9.75543 -8.36650 -6.51572 0.14081 0.17218 0.30765 1.19594 1.37924 1.46177 1.67359 2.08020 2.37753 2.39628 2.83028 2.99267 3.22333 3.26998 3.52266 3.59262 3.75618 3.78079 3.93927 3.97186 4.10776 4.16323 4.18519 4.21023 4.35797 4.36542 4.55928 4.61703 4.66560 4.75635 4.82164 4.87038 4.88835 4.92677 4.95811 4.96733 5.06900 5.08302 5.13511 5.33641 5.35812 5.43360 5.49541 5.72608 5.93411 6.06129 6.25127 6.55459 6.59821 6.86966 7.00655 7.10959 7.29675 8.77018 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022002 B = 0.002420 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.278141 B =11566.919576 C =11850.461844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.188 3.812 4 H 0.103 0.897 5 N -0.687 5.687 6 C 0.520 3.480 7 O -0.514 6.514 8 C 0.509 3.491 9 O -0.554 6.554 10 N -0.579 5.579 11 C 0.124 3.876 12 C -0.133 4.133 13 C 0.215 3.785 14 O -0.574 6.574 15 C -0.547 4.547 16 H 0.046 0.954 17 C 0.041 3.959 18 N -0.932 5.932 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.308 1.308 22 H -0.221 1.221 23 C 0.098 3.902 24 C -0.055 4.055 25 C -0.169 4.169 26 C 0.094 3.906 27 N -0.512 5.512 28 C 0.093 3.907 29 C -0.159 4.159 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.376 0.624 41 H 0.268 0.732 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.147 0.853 45 H 0.175 0.825 46 H 0.179 0.821 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.246 -14.673 -14.660 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.085 3.915 4 H 0.121 0.879 5 N -0.342 5.342 6 C 0.300 3.700 7 O -0.389 6.389 8 C 0.293 3.707 9 O -0.433 6.433 10 N -0.311 5.311 11 C 0.002 3.998 12 C -0.171 4.171 13 C 0.174 3.826 14 O -0.381 6.381 15 C -0.585 4.585 16 H 0.064 0.936 17 C -0.160 4.160 18 N -0.571 5.571 19 Si 0.758 3.242 20 H -0.193 1.193 21 H -0.237 1.237 22 H -0.143 1.143 23 C -0.024 4.024 24 C -0.064 4.064 25 C -0.189 4.189 26 C -0.063 4.063 27 N -0.221 5.221 28 C -0.063 4.063 29 C -0.179 4.179 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.254 0.746 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.224 0.776 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.165 0.835 45 H 0.192 0.808 46 H 0.196 0.804 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 19.658 -14.857 -15.445 29.082 hybrid contribution -1.135 0.782 1.002 1.704 sum 18.523 -14.076 -14.443 27.383 Atomic orbital electron populations 1.21787 0.95273 1.01377 1.01794 1.21930 0.96224 0.93847 1.04029 1.20081 0.89805 0.94909 0.86726 0.87915 1.45802 1.15283 1.55464 1.17632 1.19643 0.83304 0.79598 0.87414 1.90767 1.50970 1.57622 1.39584 1.20127 0.81260 0.80446 0.88889 1.90715 1.50990 1.60378 1.41261 1.48419 1.13706 1.52337 1.16624 1.22130 0.86663 1.01344 0.89703 1.23042 0.97424 0.98524 0.98121 1.19989 0.89138 0.82518 0.90926 1.86460 1.72406 1.37623 1.41629 1.21295 1.06272 1.34862 0.96079 0.93604 1.25673 0.95005 0.94019 1.01258 1.70046 1.14375 1.37597 1.35051 0.86173 0.79607 0.77098 0.81319 1.19261 1.23661 1.14320 1.22938 0.96870 0.95636 0.86996 1.20314 0.94529 0.96892 0.94664 1.22152 0.95204 1.01506 0.99992 1.23125 0.93102 0.94433 0.95602 1.67725 1.42123 1.12028 1.00264 1.23207 0.90970 0.94350 0.97806 1.22259 0.96538 1.00533 0.98524 0.94649 0.92480 0.92051 0.88776 0.90815 0.74649 0.90490 0.89334 0.89195 0.90756 0.77597 0.92277 0.90797 0.90671 0.83502 0.80793 0.80383 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.51 71.98 0.61 -1.93 16 2 C -0.12 -1.62 5.59 30.59 0.17 -1.45 16 3 C 0.19 2.82 2.49 44.24 0.11 2.93 16 4 H 0.10 1.67 7.48 -2.39 -0.02 1.66 16 5 N -0.69 -13.37 4.98 -447.44 -2.23 -15.60 16 6 C 0.52 13.64 6.43 87.27 0.56 14.20 16 7 O -0.51 -14.33 11.26 -3.26 -0.04 -14.37 16 8 C 0.51 16.45 7.91 87.27 0.69 17.14 16 9 O -0.55 -19.61 16.73 -3.22 -0.05 -19.66 16 10 N -0.58 -20.06 3.33 -813.42 -2.71 -22.76 16 11 C 0.12 4.07 5.49 86.73 0.48 4.55 16 12 C -0.13 -5.12 4.73 31.78 0.15 -4.97 16 13 C 0.21 9.18 0.69 -10.16 -0.01 9.17 16 14 O -0.57 -23.92 10.61 -148.98 -1.58 -25.50 16 15 C -0.55 -28.62 8.87 25.60 0.23 -28.39 16 16 H 0.05 2.65 8.03 -2.91 -0.02 2.63 16 17 C 0.04 2.26 5.47 84.65 0.46 2.73 16 18 N -0.93 -55.32 13.96 21.45 0.30 -55.02 16 19 Si 0.93 42.80 23.95 68.60 1.64 44.44 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 22 H -0.22 -9.74 5.49 99.48 0.55 -9.20 16 23 C 0.10 3.77 6.08 86.85 0.53 4.30 16 24 C -0.06 -0.74 4.98 -19.67 -0.10 -0.84 16 25 C -0.17 -2.18 9.16 22.36 0.20 -1.98 16 26 C 0.09 1.32 11.18 84.68 0.95 2.27 16 27 N -0.51 -8.66 10.36 -195.84 -2.03 -10.69 16 28 C 0.09 1.21 11.18 84.68 0.95 2.16 16 29 C -0.16 -1.85 9.78 22.36 0.22 -1.63 16 30 H 0.03 0.78 5.64 -2.39 -0.01 0.77 16 31 H 0.06 1.08 7.85 -2.39 -0.02 1.06 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.42 7.48 6.41 -92.71 -0.59 6.89 16 36 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 37 H 0.09 2.62 7.69 -2.39 -0.02 2.60 16 38 H 0.09 3.43 8.03 -2.39 -0.02 3.41 16 39 H 0.07 2.89 5.00 -2.39 -0.01 2.87 16 40 H 0.38 13.77 9.11 -74.06 -0.67 13.09 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.07 2.83 8.04 -2.39 -0.02 2.81 16 43 H 0.08 2.96 8.03 -2.38 -0.02 2.94 16 44 H 0.15 1.48 7.00 -2.91 -0.02 1.46 16 45 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 47 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -68.08 376.21 -0.90 -68.98 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.41 Total: 31.93 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 6.20 Total: 18.25 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -6.66 Total: -104.07 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -1.67 Total: -59.53 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.64 Total: 44.44 kcal Total: -68.08 -0.90 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328277986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.995 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds