Wall clock time and date at job start Wed Apr 1 2020 04:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 N 1.46496 * 109.47444 * 120.00383 * 2 1 3 5 5 C 1.46501 * 119.99919 * 300.00033 * 4 2 1 6 6 C 1.50700 * 109.46977 * 274.99631 * 5 4 2 7 7 H 1.08001 * 119.99791 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99681 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47353 * 60.00028 * 10 8 6 12 12 H 1.48497 * 109.47379 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47069 * 300.00249 * 10 8 6 14 14 S 1.65600 * 120.00029 * 119.99639 * 4 2 1 15 15 O 1.42107 * 104.27629 * 153.93080 * 14 4 2 16 16 O 1.42102 * 104.27841 * 26.07217 * 14 4 2 17 17 C 1.81404 * 104.45074 * 270.00042 * 14 4 2 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 4 19 19 C 1.50696 * 109.47264 * 60.00139 * 18 17 14 20 20 O 1.20821 * 120.00138 * 359.97438 * 19 18 17 21 21 O 1.34235 * 119.99896 * 180.02562 * 19 18 17 22 22 C 1.53002 * 109.47233 * 299.99763 * 18 17 14 23 23 C 1.53006 * 109.46977 * 300.00464 * 22 18 17 24 24 C 1.52997 * 109.47127 * 299.99541 * 23 22 18 25 25 C 1.53002 * 109.46817 * 60.00361 * 24 23 22 26 26 C 1.52996 * 109.46972 * 299.99733 * 25 24 23 27 27 H 1.09007 * 109.46969 * 299.99652 * 1 2 3 28 28 H 1.08996 * 109.47522 * 59.99489 * 1 2 3 29 29 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46674 * 240.00195 * 2 1 3 31 31 H 1.09002 * 109.46910 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47498 * 300.00042 * 3 2 1 33 33 H 1.08999 * 109.47259 * 60.00553 * 3 2 1 34 34 H 1.08998 * 109.47366 * 34.99937 * 5 4 2 35 35 H 1.09003 * 109.47064 * 154.99898 * 5 4 2 36 36 H 0.97005 * 120.00189 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47124 * 60.00022 * 17 14 4 38 38 H 1.09001 * 109.46975 * 300.00144 * 17 14 4 39 39 H 0.96692 * 117.00039 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.46986 * 60.00203 * 22 18 17 41 41 H 1.08993 * 109.47662 * 180.02562 * 22 18 17 42 42 H 1.08998 * 109.46505 * 179.97438 * 23 22 18 43 43 H 1.09001 * 109.46801 * 59.99813 * 23 22 18 44 44 H 1.08996 * 109.46952 * 300.00302 * 24 23 22 45 45 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.46986 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47407 * 60.00219 * 25 24 23 48 48 H 1.09000 * 109.47380 * 299.99696 * 26 25 24 49 49 H 1.09001 * 109.46993 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.6340 0.8904 2.9312 7 1 3.4334 1.1761 2.2636 8 6 2.4996 1.5149 4.1530 9 7 1.5258 1.1674 4.9656 10 14 3.7009 2.8549 4.6540 11 1 3.6380 3.9680 3.6732 12 1 3.3423 3.3621 6.0028 13 1 5.0777 2.2992 4.6845 14 16 2.9704 -2.0371 1.0440 15 8 3.7317 -2.0653 2.2436 16 8 3.6005 -1.8799 -0.2200 17 6 1.7964 -3.4193 1.0025 18 6 2.5633 -4.7359 0.8632 19 6 3.4935 -4.9020 2.0371 20 8 3.5388 -4.0542 2.8967 21 8 4.2725 -5.9915 2.1272 22 6 3.3760 -4.7180 -0.4330 23 6 2.4315 -4.5492 -1.6249 24 6 1.4413 -5.7150 -1.6599 25 6 0.6286 -5.7329 -0.3637 26 6 1.5731 -5.9016 0.8280 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6541 0.2178 2.5046 35 1 1.7106 -1.0076 3.2464 36 1 1.4315 1.6066 5.8254 37 1 1.1232 -3.2989 0.1536 38 1 1.2177 -3.4323 1.9261 39 1 4.8530 -6.0536 2.8980 40 1 4.0815 -3.8874 -0.4081 41 1 3.9221 -5.6560 -0.5326 42 1 3.0106 -4.5361 -2.5482 43 1 1.8852 -3.6113 -1.5255 44 1 1.9877 -6.6529 -1.7592 45 1 0.7687 -5.5951 -2.5093 46 1 -0.0772 -6.5632 -0.3889 47 1 0.0822 -4.7951 -0.2645 48 1 2.1194 -6.8396 0.7288 49 1 0.9940 -5.9148 1.7514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591574498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:55 Heat of formation + Delta-G solvation = -166.964297 kcal Electronic energy + Delta-G solvation = -32209.040657 eV Core-core repulsion = 28070.271868 eV Total energy + Delta-G solvation = -4138.768790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.91085 -38.52671 -36.87630 -36.40179 -35.97371 -35.04000 -32.67534 -32.52377 -31.07132 -30.54166 -27.68380 -26.78792 -26.48462 -24.39746 -22.97712 -22.71684 -21.06409 -20.33569 -19.19126 -18.12916 -17.69321 -17.29885 -16.96906 -16.37780 -15.91028 -15.28636 -15.13154 -14.97741 -14.47507 -14.39714 -14.12414 -13.83851 -13.66798 -13.40568 -13.07890 -12.99166 -12.64967 -12.48330 -12.33118 -12.22418 -12.05149 -11.69195 -11.67714 -11.59417 -11.44984 -11.31306 -11.20267 -10.99395 -10.95907 -10.82724 -10.76269 -10.64544 -10.57353 -10.46335 -10.35788 -10.23991 -10.09291 -9.81935 -9.67492 -9.45415 -8.32967 -7.94582 -5.95911 -3.96642 0.92667 2.27011 2.92357 3.39039 3.40853 3.43048 3.49238 4.10931 4.35909 4.48384 4.52387 4.59042 4.71644 4.84372 4.97165 5.02832 5.16732 5.23810 5.28307 5.34087 5.40543 5.41105 5.42442 5.62194 5.68275 5.69460 5.76033 5.78040 5.82871 5.91255 5.93951 5.99885 6.06522 6.07248 6.20464 6.27293 6.29661 6.51491 6.60180 6.60681 6.82868 7.20630 7.35467 7.52038 7.74895 7.95248 8.02309 8.33656 9.04000 9.66037 11.13093 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.004532 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.138214 B = 6177.303122 C = 7105.777074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.152 4.152 4 N -0.980 5.980 5 C 0.255 3.745 6 C -0.514 4.514 7 H 0.061 0.939 8 C 0.061 3.939 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 S 2.594 3.406 15 O -0.902 6.902 16 O -0.975 6.975 17 C -0.638 4.638 18 C -0.023 4.023 19 C 0.435 3.565 20 O -0.439 6.439 21 O -0.516 6.516 22 C -0.138 4.138 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.098 4.098 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.411 0.589 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -15.042 -12.843 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 C -0.211 4.211 4 N -0.819 5.819 5 C 0.134 3.866 6 C -0.553 4.553 7 H 0.079 0.921 8 C -0.141 4.141 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.201 1.201 14 S 2.685 3.315 15 O -0.892 6.892 16 O -0.965 6.965 17 C -0.763 4.763 18 C -0.025 4.025 19 C 0.273 3.727 20 O -0.322 6.322 21 O -0.329 6.329 22 C -0.176 4.176 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.136 4.136 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.269 0.731 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.331 -14.744 -12.772 19.645 hybrid contribution 0.256 0.460 1.092 1.213 sum -2.076 -14.284 -11.679 18.567 Atomic orbital electron populations 1.22206 0.96174 1.01304 1.02526 1.20644 0.93454 0.94896 0.86920 1.22110 1.01462 0.95492 1.02029 1.57623 1.70317 1.40427 1.13569 1.19041 0.96749 0.95238 0.75602 1.21449 1.13189 1.18780 1.01899 0.92069 1.24898 0.95599 0.97390 0.96199 1.69907 1.31512 1.42596 1.09839 0.86653 0.81918 0.81933 0.77520 1.20250 1.21337 1.20127 1.05577 0.76261 0.75090 0.74609 1.93747 1.65461 1.84590 1.45373 1.93498 1.72954 1.85308 1.44758 1.31019 1.18635 1.14752 1.11873 1.20021 0.93935 0.96236 0.92338 1.23599 0.80502 0.79836 0.88787 1.91191 1.63287 1.38793 1.38905 1.84425 1.53201 1.44103 1.51204 1.22049 0.98489 1.04905 0.92153 1.21514 0.97245 0.98853 0.97683 1.21611 0.98073 0.98934 0.97410 1.21603 0.97663 1.02581 0.94094 1.21513 0.96377 0.96096 0.99640 0.91099 0.92402 0.93384 0.90180 0.92735 0.93646 0.89791 0.94536 0.94431 0.92856 0.84257 0.84403 0.73073 0.89564 0.89407 0.90737 0.91322 0.91661 0.91602 0.91300 0.91210 0.90156 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.16 37.16 0.34 -2.07 16 2 C 0.15 2.60 3.19 -67.93 -0.22 2.39 16 3 C -0.15 -2.80 8.20 37.15 0.30 -2.49 16 4 N -0.98 -20.40 2.66 -108.58 -0.29 -20.69 16 5 C 0.26 6.40 4.58 -5.19 -0.02 6.38 16 6 C -0.51 -14.42 7.53 -34.44 -0.26 -14.68 16 7 H 0.06 1.73 7.07 -52.49 -0.37 1.36 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 10 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 S 2.59 51.93 4.55 -107.50 -0.49 51.44 16 15 O -0.90 -22.53 13.12 -67.55 -0.89 -23.42 16 16 O -0.97 -19.50 14.19 -57.54 -0.82 -20.32 16 17 C -0.64 -9.40 4.10 37.16 0.15 -9.25 16 18 C -0.02 -0.30 0.48 -155.66 -0.08 -0.38 16 19 C 0.44 6.68 6.59 36.00 0.24 6.91 16 20 O -0.44 -8.82 12.78 -27.11 -0.35 -9.16 16 21 O -0.52 -5.98 13.23 -39.27 -0.52 -6.50 16 22 C -0.14 -1.71 4.19 -26.73 -0.11 -1.83 16 23 C -0.12 -1.20 5.65 -26.73 -0.15 -1.35 16 24 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 25 C -0.12 -1.04 5.65 -26.73 -0.15 -1.19 16 26 C -0.10 -0.99 4.66 -26.73 -0.12 -1.11 16 27 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.29 6.87 -51.93 -0.36 0.93 16 31 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.74 6.65 -51.93 -0.35 1.39 16 34 H 0.04 0.92 6.45 -51.93 -0.33 0.58 16 35 H 0.04 1.03 7.61 -51.93 -0.40 0.63 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.14 1.65 4.81 -51.92 -0.25 1.40 16 38 H 0.14 2.03 8.10 -51.92 -0.42 1.61 16 39 H 0.41 3.22 9.10 45.56 0.41 3.63 16 40 H 0.09 1.28 5.47 -51.93 -0.28 0.99 16 41 H 0.09 0.92 8.11 -51.93 -0.42 0.50 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.61 6.43 -51.93 -0.33 0.28 16 48 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -35.83 379.32 -9.38 -45.21 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.13 Total: 4.47 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.33 Total: -18.20 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.45 Total: -46.53 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -2.57 Total: -59.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.49 Total: 51.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.83 -9.38 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591574498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.757 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds