Wall clock time and date at job start Wed Apr 1 2020 04:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 N 1.46496 * 109.47444 * 120.00383 * 2 1 3 5 5 C 1.46501 * 119.99919 * 300.00033 * 4 2 1 6 6 C 1.50700 * 109.46977 * 274.99631 * 5 4 2 7 7 H 1.08001 * 119.99791 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99735 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99681 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47353 * 60.00028 * 10 8 6 12 12 H 1.48497 * 109.47379 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47069 * 300.00249 * 10 8 6 14 14 S 1.65600 * 120.00029 * 119.99639 * 4 2 1 15 15 O 1.42107 * 104.27629 * 153.93080 * 14 4 2 16 16 O 1.42102 * 104.27841 * 26.07217 * 14 4 2 17 17 C 1.81404 * 104.45074 * 270.00042 * 14 4 2 18 18 C 1.53000 * 109.46946 * 180.02562 * 17 14 4 19 19 C 1.50696 * 109.47264 * 60.00139 * 18 17 14 20 20 O 1.20821 * 120.00138 * 359.97438 * 19 18 17 21 21 O 1.34235 * 119.99896 * 180.02562 * 19 18 17 22 22 C 1.53002 * 109.47233 * 299.99763 * 18 17 14 23 23 C 1.53006 * 109.46977 * 300.00464 * 22 18 17 24 24 C 1.52997 * 109.47127 * 299.99541 * 23 22 18 25 25 C 1.53002 * 109.46817 * 60.00361 * 24 23 22 26 26 C 1.52996 * 109.46972 * 299.99733 * 25 24 23 27 27 H 1.09007 * 109.46969 * 299.99652 * 1 2 3 28 28 H 1.08996 * 109.47522 * 59.99489 * 1 2 3 29 29 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46674 * 240.00195 * 2 1 3 31 31 H 1.09002 * 109.46910 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47498 * 300.00042 * 3 2 1 33 33 H 1.08999 * 109.47259 * 60.00553 * 3 2 1 34 34 H 1.08998 * 109.47366 * 34.99937 * 5 4 2 35 35 H 1.09003 * 109.47064 * 154.99898 * 5 4 2 36 36 H 0.97005 * 120.00189 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47124 * 60.00022 * 17 14 4 38 38 H 1.09001 * 109.46975 * 300.00144 * 17 14 4 39 39 H 0.96692 * 117.00039 * 179.97438 * 21 19 18 40 40 H 1.09000 * 109.46986 * 60.00203 * 22 18 17 41 41 H 1.08993 * 109.47662 * 180.02562 * 22 18 17 42 42 H 1.08998 * 109.46505 * 179.97438 * 23 22 18 43 43 H 1.09001 * 109.46801 * 59.99813 * 23 22 18 44 44 H 1.08996 * 109.46952 * 300.00302 * 24 23 22 45 45 H 1.09002 * 109.47153 * 180.02562 * 24 23 22 46 46 H 1.09000 * 109.46986 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47407 * 60.00219 * 25 24 23 48 48 H 1.09000 * 109.47380 * 299.99696 * 26 25 24 49 49 H 1.09001 * 109.46993 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.6340 0.8904 2.9312 7 1 3.4334 1.1761 2.2636 8 6 2.4996 1.5149 4.1530 9 7 1.5258 1.1674 4.9656 10 14 3.7009 2.8549 4.6540 11 1 3.6380 3.9680 3.6732 12 1 3.3423 3.3621 6.0028 13 1 5.0777 2.2992 4.6845 14 16 2.9704 -2.0371 1.0440 15 8 3.7317 -2.0653 2.2436 16 8 3.6005 -1.8799 -0.2200 17 6 1.7964 -3.4193 1.0025 18 6 2.5633 -4.7359 0.8632 19 6 3.4935 -4.9020 2.0371 20 8 3.5388 -4.0542 2.8967 21 8 4.2725 -5.9915 2.1272 22 6 3.3760 -4.7180 -0.4330 23 6 2.4315 -4.5492 -1.6249 24 6 1.4413 -5.7150 -1.6599 25 6 0.6286 -5.7329 -0.3637 26 6 1.5731 -5.9016 0.8280 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.6541 0.2178 2.5046 35 1 1.7106 -1.0076 3.2464 36 1 1.4315 1.6066 5.8254 37 1 1.1232 -3.2989 0.1536 38 1 1.2177 -3.4323 1.9261 39 1 4.8530 -6.0536 2.8980 40 1 4.0815 -3.8874 -0.4081 41 1 3.9221 -5.6560 -0.5326 42 1 3.0106 -4.5361 -2.5482 43 1 1.8852 -3.6113 -1.5255 44 1 1.9877 -6.6529 -1.7592 45 1 0.7687 -5.5951 -2.5093 46 1 -0.0772 -6.5632 -0.3889 47 1 0.0822 -4.7951 -0.2645 48 1 2.1194 -6.8396 0.7288 49 1 0.9940 -5.9148 1.7514 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591574498.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:54 Heat of formation + Delta-G solvation = -192.230017 kcal Electronic energy + Delta-G solvation = -32210.136261 eV Core-core repulsion = 28070.271868 eV Total energy + Delta-G solvation = -4139.864393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.01765 -39.51095 -38.43891 -37.96954 -37.19234 -36.69564 -34.77150 -33.43053 -32.22361 -31.82655 -29.08127 -28.50019 -27.85317 -25.36130 -24.74732 -23.74962 -22.05339 -21.71242 -20.22103 -19.52360 -19.06622 -18.62295 -18.54494 -18.20250 -17.26094 -16.88058 -16.44476 -16.26311 -15.95619 -15.39845 -15.25711 -15.07744 -14.90369 -14.71965 -14.62471 -14.08263 -14.04649 -13.65533 -13.59855 -13.45181 -13.32043 -13.26528 -13.00238 -12.89895 -12.83762 -12.70444 -12.66354 -12.56669 -12.40237 -12.35996 -12.12628 -12.08207 -12.00799 -11.88524 -11.62533 -11.51850 -11.31327 -11.23603 -11.03567 -10.88160 -10.53134 -9.67522 -8.15384 -6.22450 -0.59687 1.09011 1.35369 1.39705 1.46131 1.80812 1.95208 2.42207 2.91072 3.14362 3.15678 3.32180 3.48625 3.68156 3.92249 3.99134 4.06108 4.17635 4.26101 4.32974 4.36538 4.41226 4.42496 4.45979 4.56209 4.59264 4.65499 4.90581 4.91850 4.95562 5.03252 5.07225 5.12264 5.14930 5.20282 5.24698 5.25209 5.36644 5.37851 5.41177 5.57020 5.58987 5.59497 5.69665 5.82724 6.07535 6.20751 6.82957 6.88851 7.42825 8.92423 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.004532 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.138214 B = 6177.303122 C = 7105.777074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.989 5.989 5 C 0.275 3.725 6 C -0.524 4.524 7 H 0.048 0.952 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.946 3.054 11 H -0.262 1.262 12 H -0.276 1.276 13 H -0.284 1.284 14 S 2.585 3.415 15 O -0.964 6.964 16 O -0.984 6.984 17 C -0.609 4.609 18 C -0.026 4.026 19 C 0.434 3.566 20 O -0.496 6.496 21 O -0.501 6.501 22 C -0.141 4.141 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.094 4.094 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.176 0.824 38 H 0.139 0.861 39 H 0.426 0.574 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -16.894 -15.390 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 C -0.210 4.210 4 N -0.827 5.827 5 C 0.151 3.849 6 C -0.564 4.564 7 H 0.067 0.933 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.772 3.228 11 H -0.187 1.187 12 H -0.201 1.201 13 H -0.210 1.210 14 S 2.682 3.318 15 O -0.954 6.954 16 O -0.974 6.974 17 C -0.739 4.739 18 C -0.029 4.029 19 C 0.274 3.726 20 O -0.383 6.383 21 O -0.315 6.315 22 C -0.179 4.179 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.132 4.132 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.073 0.927 37 H 0.194 0.806 38 H 0.157 0.843 39 H 0.288 0.712 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.115 0.885 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.796 -16.556 -15.348 22.893 hybrid contribution 0.789 0.885 1.805 2.160 sum -3.007 -15.671 -13.543 20.929 Atomic orbital electron populations 1.22158 0.93515 1.02986 1.02897 1.21000 0.95680 0.94099 0.86204 1.22090 0.99923 0.96599 1.02427 1.57494 1.70378 1.41980 1.12864 1.18508 0.95847 0.93270 0.77242 1.21737 1.13249 1.19488 1.01908 0.93350 1.25652 0.97248 0.99601 0.96364 1.69997 1.32877 1.43750 1.10180 0.85796 0.79231 0.79856 0.77960 1.18666 1.20134 1.21000 1.05487 0.76799 0.76091 0.73437 1.93684 1.68281 1.85816 1.47630 1.93477 1.73917 1.85956 1.44099 1.30698 1.17085 1.12466 1.13660 1.20242 0.94411 0.96413 0.91845 1.24157 0.80375 0.79462 0.88571 1.91196 1.65139 1.40761 1.41194 1.84380 1.52788 1.42314 1.52028 1.22113 0.98562 1.04687 0.92522 1.21599 0.97477 0.99724 0.96883 1.21609 0.97752 0.98294 0.97844 1.21669 0.97572 1.03548 0.93220 1.21591 0.95956 0.94916 1.00786 0.93498 0.89147 0.91119 0.88159 0.95116 0.89817 0.92739 0.94716 0.97519 0.92694 0.80624 0.84286 0.71216 0.92695 0.87398 0.89820 0.92086 0.90362 0.89812 0.88968 0.91347 0.88463 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.16 71.98 0.66 -3.65 16 2 C 0.14 4.70 3.19 44.99 0.14 4.84 16 3 C -0.15 -5.61 8.20 71.98 0.59 -5.02 16 4 N -0.99 -42.28 2.66 -497.42 -1.32 -43.61 16 5 C 0.27 14.45 4.58 85.63 0.39 14.84 16 6 C -0.52 -30.82 7.53 25.60 0.19 -30.63 16 7 H 0.05 2.89 7.07 -2.91 -0.02 2.87 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 10 Si 0.95 46.94 29.54 68.60 2.03 48.97 16 11 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 14 S 2.58 106.56 4.55 -56.49 -0.26 106.31 16 15 O -0.96 -51.27 13.12 -118.07 -1.55 -52.82 16 16 O -0.98 -40.02 14.19 -127.65 -1.81 -41.84 16 17 C -0.61 -17.35 4.10 71.98 0.29 -17.05 16 18 C -0.03 -0.65 0.48 -52.93 -0.03 -0.68 16 19 C 0.43 13.30 6.59 71.23 0.47 13.77 16 20 O -0.50 -20.86 12.78 29.97 0.38 -20.48 16 21 O -0.50 -11.08 13.23 -51.47 -0.68 -11.76 16 22 C -0.14 -3.23 4.19 30.60 0.13 -3.10 16 23 C -0.12 -2.10 5.65 30.60 0.17 -1.92 16 24 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 25 C -0.12 -1.52 5.65 30.59 0.17 -1.35 16 26 C -0.09 -1.58 4.66 30.59 0.14 -1.44 16 27 H 0.05 1.52 6.69 -2.38 -0.02 1.50 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.10 3.06 6.87 -2.39 -0.02 3.04 16 31 H 0.03 1.23 7.93 -2.39 -0.02 1.21 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 2.32 6.65 -2.39 -0.02 2.30 16 34 H 0.03 1.82 6.45 -2.39 -0.02 1.81 16 35 H 0.01 0.40 7.61 -2.39 -0.02 0.38 16 36 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 37 H 0.18 3.66 4.81 -2.39 -0.01 3.65 16 38 H 0.14 4.05 8.10 -2.39 -0.02 4.03 16 39 H 0.43 6.45 9.10 -74.06 -0.67 5.78 16 40 H 0.05 1.61 5.47 -2.39 -0.01 1.60 16 41 H 0.11 1.98 8.11 -2.39 -0.02 1.96 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.15 6.43 -2.39 -0.02 1.13 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 48 H 0.10 1.35 8.11 -2.39 -0.02 1.33 16 49 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -83.49 379.32 1.34 -82.15 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.29 Total: 20.87 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 3.98 Total: -31.53 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -1.04 Total: -99.87 kcal Atomic # 8 Polarization: -123.23 SS G_CDS: -3.66 Total: -126.89 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 106.56 SS G_CDS: -0.26 Total: 106.31 kcal Total: -83.49 1.34 -82.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591574498.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.075 kcal (2) G-P(sol) polarization free energy of solvation -83.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds