Wall clock time and date at job start Wed Apr 1 2020 04:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47397 * 120.00511 * 2 1 3 5 5 C 1.36941 * 119.99585 * 301.89934 * 4 2 1 6 6 H 1.08001 * 119.99926 * 324.85827 * 5 4 2 7 7 C 1.38813 * 119.99694 * 144.85699 * 5 4 2 8 8 N 1.31623 * 119.99794 * 157.16578 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 337.16707 * 7 5 4 10 10 H 1.48501 * 109.47102 * 95.35036 * 9 7 5 11 11 H 1.48497 * 109.47214 * 215.35339 * 9 7 5 12 12 H 1.48503 * 109.46717 * 335.35199 * 9 7 5 13 13 C 1.46497 * 120.00156 * 121.89844 * 4 2 1 14 14 C 1.52996 * 109.47031 * 90.00322 * 13 4 2 15 15 C 1.52995 * 109.46983 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47365 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00222 * 180.02562 * 16 15 14 18 18 O 1.21571 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00168 * 180.02562 * 17 16 15 20 20 C 1.39998 * 119.96407 * 359.95796 * 19 17 16 21 21 C 1.36596 * 120.46199 * 180.02562 * 20 19 17 22 22 C 1.38796 * 120.21277 * 359.97438 * 21 20 19 23 23 O 1.35180 * 133.65722 * 180.02562 * 22 21 20 24 24 C 1.34393 * 108.24768 * 180.02562 * 23 22 21 25 25 O 1.35181 * 124.90649 * 180.02562 * 24 23 22 26 26 N 1.30583 * 110.18312 * 0.02562 * 24 23 22 27 27 C 1.36221 * 108.67902 * 359.97438 * 26 24 23 28 28 C 1.39218 * 133.66369 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.47006 * 305.32661 * 1 2 3 30 30 H 1.09006 * 109.47271 * 65.32349 * 1 2 3 31 31 H 1.09003 * 109.47326 * 185.32376 * 1 2 3 32 32 H 1.09004 * 109.46891 * 240.00395 * 2 1 3 33 33 H 1.09001 * 109.47353 * 175.18901 * 3 2 1 34 34 H 1.08999 * 109.47579 * 295.19098 * 3 2 1 35 35 H 1.09009 * 109.47066 * 55.18864 * 3 2 1 36 36 H 0.96998 * 120.00185 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.46919 * 329.99969 * 13 4 2 38 38 H 1.09002 * 109.47026 * 210.00095 * 13 4 2 39 39 H 1.08995 * 109.47557 * 60.00038 * 14 13 4 40 40 H 1.09002 * 109.47030 * 299.99770 * 14 13 4 41 41 H 1.09003 * 109.47490 * 59.99960 * 15 14 13 42 42 H 1.08996 * 109.47417 * 299.99509 * 15 14 13 43 43 H 0.97000 * 119.99660 * 0.02562 * 16 15 14 44 44 H 1.08003 * 119.76458 * 0.02562 * 20 19 17 45 45 H 1.08009 * 119.89554 * 180.02562 * 21 20 19 46 46 H 0.96703 * 114.00177 * 359.97438 * 25 24 23 47 47 H 1.08005 * 120.26500 * 359.70860 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6557 -0.2460 2.4395 6 1 1.5323 0.8116 2.6200 7 6 1.4468 -1.1547 3.4678 8 7 1.5442 -0.7642 4.7210 9 14 1.0272 -2.9317 3.0733 10 1 2.2673 -3.7486 3.0902 11 1 0.0771 -3.4531 4.0884 12 1 0.4039 -3.0060 1.7275 13 6 2.8946 -1.8570 1.0620 14 6 4.3542 -1.3988 1.0430 15 6 5.2693 -2.6170 0.9036 16 7 6.6670 -2.1782 0.8848 17 6 7.6567 -3.0856 0.7681 18 8 7.3897 -4.2683 0.6789 19 6 9.0659 -2.6433 0.7497 20 6 9.3726 -1.2812 0.8526 21 6 10.6722 -0.8608 0.8362 22 6 11.7030 -1.7827 0.7175 23 8 13.0498 -1.6760 0.6732 24 6 13.5659 -2.9106 0.5479 25 8 14.8856 -3.1934 0.4721 26 7 12.6082 -3.7975 0.5100 27 6 11.4124 -3.1530 0.6123 28 6 10.0879 -3.5814 0.6284 29 1 -0.3633 0.5943 0.8385 30 1 -0.3634 0.4291 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5138 -0.8901 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9309 -0.9299 35 1 1.6079 1.9806 0.8438 36 1 1.3986 -1.3992 5.4396 37 1 2.6654 -2.3787 0.1328 38 1 2.7359 -2.5296 1.9050 39 1 4.5834 -0.8771 1.9721 40 1 4.5130 -0.7263 0.2000 41 1 5.0403 -3.1391 -0.0255 42 1 5.1106 -3.2891 1.7468 43 1 6.8801 -1.2346 0.9563 44 1 8.5761 -0.5578 0.9457 45 1 10.8984 0.1922 0.9166 46 1 15.4578 -2.4150 0.5156 47 1 9.8547 -4.6326 0.5435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664514113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:34 Heat of formation + Delta-G solvation = -10.379187 kcal Electronic energy + Delta-G solvation = -29411.585560 eV Core-core repulsion = 25176.455610 eV Total energy + Delta-G solvation = -4235.129950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.79324 -40.15877 -38.84359 -37.67016 -37.10012 -35.30857 -35.11111 -32.63697 -31.92235 -31.23814 -30.11788 -29.05119 -26.34505 -25.79092 -24.40327 -23.88203 -23.19991 -22.33914 -21.36146 -21.20510 -19.96474 -19.44174 -18.29903 -17.98308 -17.73491 -16.66955 -16.13028 -15.83239 -15.72314 -15.57759 -15.10800 -14.85513 -14.50227 -14.42858 -14.34840 -13.96421 -13.77415 -13.43340 -13.37529 -13.05884 -12.80673 -12.35777 -12.19905 -12.03463 -11.89915 -11.83197 -11.56330 -11.41768 -11.19068 -10.90657 -10.82954 -10.74358 -10.45855 -10.44011 -10.06561 -9.94112 -9.68959 -9.39173 -9.31590 -8.97236 -8.79882 -8.49033 -6.87532 -5.99254 -3.38129 0.30263 0.34560 1.39204 1.91537 2.47038 2.60916 3.09755 3.31923 3.46199 3.49010 3.52317 3.96253 4.28236 4.41339 4.52210 4.53586 4.56756 4.82948 4.85030 5.08678 5.31307 5.45893 5.51451 5.54515 5.57953 5.71040 5.75709 5.76863 5.80637 5.98673 6.00485 6.03182 6.15052 6.17923 6.20474 6.29202 6.30730 6.49887 6.53513 6.61784 6.68330 6.73157 6.87798 7.06744 7.13232 7.18793 7.46854 8.04730 8.13991 8.38412 8.99387 9.72770 10.11958 11.16411 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.001967 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.582664 B =14234.546734 C =14741.252444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.259 4.259 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.146 4.146 15 C 0.117 3.883 16 N -0.716 5.716 17 C 0.557 3.443 18 O -0.534 6.534 19 C -0.122 4.122 20 C -0.068 4.068 21 C -0.086 4.086 22 C 0.024 3.976 23 O -0.243 6.243 24 C 0.437 3.563 25 O -0.389 6.389 26 N -0.468 5.468 27 C 0.038 3.962 28 C -0.002 4.002 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.400 0.600 44 H 0.148 0.852 45 H 0.144 0.856 46 H 0.426 0.574 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.222 2.253 -10.555 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.388 4.388 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.187 4.187 15 C -0.007 4.007 16 N -0.368 5.368 17 C 0.343 3.657 18 O -0.412 6.412 19 C -0.126 4.126 20 C -0.087 4.087 21 C -0.105 4.105 22 C -0.026 4.026 23 O -0.139 6.139 24 C 0.187 3.813 25 O -0.190 6.190 26 N -0.215 5.215 27 C -0.072 4.072 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.235 0.765 44 H 0.166 0.834 45 H 0.162 0.838 46 H 0.283 0.717 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 21.978 0.186 -10.543 24.377 hybrid contribution 0.440 0.708 0.172 0.851 sum 22.418 0.894 -10.372 24.717 Atomic orbital electron populations 1.22121 0.97660 1.01377 0.99942 1.20395 0.92511 0.92225 0.88908 1.22157 1.00637 0.98355 1.00012 1.44238 1.52364 1.33118 1.02579 1.18670 1.42577 0.93123 0.84386 0.90185 1.25407 0.98496 0.97668 0.95071 1.69866 1.50409 1.35421 0.98555 0.87003 0.77851 0.86767 0.77877 1.21352 1.23238 1.19469 1.21073 0.87950 0.90314 0.99158 1.22435 0.97134 0.96223 1.02866 1.21554 0.78483 0.98442 1.02178 1.46012 1.06887 1.10116 1.73768 1.17987 0.84591 0.86000 0.77127 1.90806 1.84180 1.16599 1.49613 1.19842 0.93701 0.93488 1.05609 1.20903 0.95732 0.94962 0.97104 1.19503 0.88660 0.98859 1.03482 1.20090 0.80037 0.96823 1.05615 1.84468 1.20467 1.32868 1.76122 1.23051 0.87139 0.77631 0.93510 1.85198 1.07964 1.36179 1.89610 1.70936 0.96009 1.28397 1.26134 1.19470 0.92944 0.89378 1.05453 1.20363 0.86961 1.01330 0.93559 0.92094 0.94510 0.93477 0.93264 0.93471 0.94413 0.92489 0.92796 0.94077 0.92755 0.90439 0.92096 0.91563 0.91280 0.76456 0.83442 0.83820 0.71665 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.04 37.16 0.34 -2.42 16 2 C 0.17 3.06 3.36 -67.93 -0.23 2.83 16 3 C -0.15 -2.55 9.11 37.16 0.34 -2.21 16 4 N -0.60 -13.04 2.06 -165.67 -0.34 -13.38 16 5 C -0.26 -6.71 8.74 -15.06 -0.13 -6.84 16 6 H 0.08 2.26 7.17 -52.49 -0.38 1.88 16 7 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 8 N -0.90 -26.62 13.97 55.49 0.78 -25.84 16 9 Si 0.87 21.75 24.97 -169.99 -4.24 17.51 16 10 H -0.29 -6.94 6.66 56.52 0.38 -6.56 16 11 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 13 C 0.14 2.81 4.49 -4.05 -0.02 2.79 16 14 C -0.15 -2.38 5.65 -26.74 -0.15 -2.54 16 15 C 0.12 1.76 5.67 -4.04 -0.02 1.73 16 16 N -0.72 -8.99 5.51 -61.29 -0.34 -9.33 16 17 C 0.56 7.70 7.77 -12.39 -0.10 7.60 16 18 O -0.53 -9.40 16.33 5.30 0.09 -9.32 16 19 C -0.12 -1.36 5.87 -104.99 -0.62 -1.98 16 20 C -0.07 -0.56 9.47 -39.52 -0.37 -0.93 16 21 C -0.09 -0.66 9.99 -39.97 -0.40 -1.06 16 22 C 0.02 0.24 7.42 -38.53 -0.29 -0.05 16 23 O -0.24 -2.07 10.78 -20.30 -0.22 -2.29 16 24 C 0.44 3.89 9.53 52.23 0.50 4.39 16 25 O -0.39 -1.97 13.62 -40.53 -0.55 -2.52 16 26 N -0.47 -5.72 11.38 -12.82 -0.15 -5.87 16 27 C 0.04 0.45 7.22 -84.71 -0.61 -0.16 16 28 C 0.00 -0.03 9.64 -38.84 -0.37 -0.40 16 29 H 0.06 1.20 7.80 -51.93 -0.40 0.79 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 1.05 7.25 -51.92 -0.38 0.67 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.05 1.22 2.98 -51.93 -0.15 1.07 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.40 3.84 6.48 -40.82 -0.26 3.57 16 44 H 0.15 0.81 6.37 -52.48 -0.33 0.48 16 45 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.43 -0.70 9.06 45.56 0.41 -0.29 16 47 H 0.15 1.90 7.64 -52.48 -0.40 1.50 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -35.09 389.72 -7.02 -42.11 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.68 Total: 1.47 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.23 Total: 1.59 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.05 Total: -54.42 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.68 Total: -14.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.24 Total: 17.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.09 -7.02 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664514113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.728 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds