Wall clock time and date at job start Wed Apr 1 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 N 1.46499 * 109.47397 * 120.00511 * 2 1 3 5 5 C 1.36941 * 119.99585 * 301.89934 * 4 2 1 6 6 H 1.08001 * 119.99926 * 324.85827 * 5 4 2 7 7 C 1.38813 * 119.99694 * 144.85699 * 5 4 2 8 8 N 1.31623 * 119.99794 * 157.16578 * 7 5 4 9 9 Si 1.86800 * 120.00364 * 337.16707 * 7 5 4 10 10 H 1.48501 * 109.47102 * 95.35036 * 9 7 5 11 11 H 1.48497 * 109.47214 * 215.35339 * 9 7 5 12 12 H 1.48503 * 109.46717 * 335.35199 * 9 7 5 13 13 C 1.46497 * 120.00156 * 121.89844 * 4 2 1 14 14 C 1.52996 * 109.47031 * 90.00322 * 13 4 2 15 15 C 1.52995 * 109.46983 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47365 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00222 * 180.02562 * 16 15 14 18 18 O 1.21571 * 120.00407 * 359.97438 * 17 16 15 19 19 C 1.47711 * 120.00168 * 180.02562 * 17 16 15 20 20 C 1.39998 * 119.96407 * 359.95796 * 19 17 16 21 21 C 1.36596 * 120.46199 * 180.02562 * 20 19 17 22 22 C 1.38796 * 120.21277 * 359.97438 * 21 20 19 23 23 O 1.35180 * 133.65722 * 180.02562 * 22 21 20 24 24 C 1.34393 * 108.24768 * 180.02562 * 23 22 21 25 25 O 1.35181 * 124.90649 * 180.02562 * 24 23 22 26 26 N 1.30583 * 110.18312 * 0.02562 * 24 23 22 27 27 C 1.36221 * 108.67902 * 359.97438 * 26 24 23 28 28 C 1.39218 * 133.66369 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.47006 * 305.32661 * 1 2 3 30 30 H 1.09006 * 109.47271 * 65.32349 * 1 2 3 31 31 H 1.09003 * 109.47326 * 185.32376 * 1 2 3 32 32 H 1.09004 * 109.46891 * 240.00395 * 2 1 3 33 33 H 1.09001 * 109.47353 * 175.18901 * 3 2 1 34 34 H 1.08999 * 109.47579 * 295.19098 * 3 2 1 35 35 H 1.09009 * 109.47066 * 55.18864 * 3 2 1 36 36 H 0.96998 * 120.00185 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.46919 * 329.99969 * 13 4 2 38 38 H 1.09002 * 109.47026 * 210.00095 * 13 4 2 39 39 H 1.08995 * 109.47557 * 60.00038 * 14 13 4 40 40 H 1.09002 * 109.47030 * 299.99770 * 14 13 4 41 41 H 1.09003 * 109.47490 * 59.99960 * 15 14 13 42 42 H 1.08996 * 109.47417 * 299.99509 * 15 14 13 43 43 H 0.97000 * 119.99660 * 0.02562 * 16 15 14 44 44 H 1.08003 * 119.76458 * 0.02562 * 20 19 17 45 45 H 1.08009 * 119.89554 * 180.02562 * 21 20 19 46 46 H 0.96703 * 114.00177 * 359.97438 * 25 24 23 47 47 H 1.08005 * 120.26500 * 359.70860 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6557 -0.2460 2.4395 6 1 1.5323 0.8116 2.6200 7 6 1.4468 -1.1547 3.4678 8 7 1.5442 -0.7642 4.7210 9 14 1.0272 -2.9317 3.0733 10 1 2.2673 -3.7486 3.0902 11 1 0.0771 -3.4531 4.0884 12 1 0.4039 -3.0060 1.7275 13 6 2.8946 -1.8570 1.0620 14 6 4.3542 -1.3988 1.0430 15 6 5.2693 -2.6170 0.9036 16 7 6.6670 -2.1782 0.8848 17 6 7.6567 -3.0856 0.7681 18 8 7.3897 -4.2683 0.6789 19 6 9.0659 -2.6433 0.7497 20 6 9.3726 -1.2812 0.8526 21 6 10.6722 -0.8608 0.8362 22 6 11.7030 -1.7827 0.7175 23 8 13.0498 -1.6760 0.6732 24 6 13.5659 -2.9106 0.5479 25 8 14.8856 -3.1934 0.4721 26 7 12.6082 -3.7975 0.5100 27 6 11.4124 -3.1530 0.6123 28 6 10.0879 -3.5814 0.6284 29 1 -0.3633 0.5943 0.8385 30 1 -0.3634 0.4291 -0.9339 31 1 -0.3634 -1.0232 0.0954 32 1 1.8933 -0.5138 -0.8901 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9309 -0.9299 35 1 1.6079 1.9806 0.8438 36 1 1.3986 -1.3992 5.4396 37 1 2.6654 -2.3787 0.1328 38 1 2.7359 -2.5296 1.9050 39 1 4.5834 -0.8771 1.9721 40 1 4.5130 -0.7263 0.2000 41 1 5.0403 -3.1391 -0.0255 42 1 5.1106 -3.2891 1.7468 43 1 6.8801 -1.2346 0.9563 44 1 8.5761 -0.5578 0.9457 45 1 10.8984 0.1922 0.9166 46 1 15.4578 -2.4150 0.5156 47 1 9.8547 -4.6326 0.5435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664514113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:33 Heat of formation + Delta-G solvation = -39.692494 kcal Electronic energy + Delta-G solvation = -29412.856680 eV Core-core repulsion = 25176.455610 eV Total energy + Delta-G solvation = -4236.401070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.49039 -41.16977 -39.45716 -38.78488 -38.31694 -36.49152 -35.92548 -34.28546 -33.56228 -32.08833 -31.23809 -30.27444 -27.74005 -27.22303 -25.69225 -24.64790 -24.50842 -23.08836 -22.69246 -22.15239 -21.12552 -20.66289 -19.16516 -18.76389 -18.41384 -18.37303 -17.31329 -17.20629 -16.73163 -16.53464 -16.37201 -16.24947 -15.48142 -15.29805 -15.16957 -14.94897 -14.84440 -14.76806 -14.68400 -14.17951 -14.05244 -13.98328 -13.60806 -13.47077 -13.27694 -12.86461 -12.76786 -12.61387 -12.55248 -12.30757 -12.24090 -12.13783 -11.97204 -11.65237 -11.64602 -11.37423 -11.21452 -11.13433 -10.51683 -10.27610 -9.94082 -9.51230 -8.70700 -8.11797 -5.44184 -0.47613 -0.38241 0.75380 1.22471 1.32594 1.44182 1.52229 1.66588 1.83242 2.15586 2.46820 2.59859 3.11585 3.23215 3.38160 3.53602 3.74392 3.81006 3.93212 4.06611 4.10946 4.21311 4.34122 4.42979 4.52267 4.56063 4.63275 4.75579 4.79373 4.79518 4.86339 4.93354 4.99790 5.00830 5.04042 5.13265 5.19869 5.24249 5.27693 5.30917 5.35913 5.48723 5.62054 5.69274 5.76666 6.04487 6.29876 6.46642 6.62503 7.09073 7.11167 7.76319 8.15902 9.08229 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.001967 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.582664 B =14234.546734 C =14741.252444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 C -0.144 4.144 4 N -0.611 5.611 5 C -0.225 4.225 6 H 0.050 0.950 7 C -0.023 4.023 8 N -0.951 5.951 9 Si 0.928 3.072 10 H -0.281 1.281 11 H -0.321 1.321 12 H -0.259 1.259 13 C 0.131 3.869 14 C -0.126 4.126 15 C 0.126 3.874 16 N -0.703 5.703 17 C 0.557 3.443 18 O -0.580 6.580 19 C -0.127 4.127 20 C -0.060 4.060 21 C -0.070 4.070 22 C 0.020 3.980 23 O -0.231 6.231 24 C 0.454 3.546 25 O -0.382 6.382 26 N -0.520 5.520 27 C 0.019 3.981 28 C -0.023 4.023 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.257 0.743 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.417 0.583 44 H 0.180 0.820 45 H 0.183 0.817 46 H 0.453 0.547 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.945 4.190 -13.148 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.334 5.334 5 C -0.355 4.355 6 H 0.068 0.932 7 C -0.218 4.218 8 N -0.596 5.596 9 Si 0.760 3.240 10 H -0.209 1.209 11 H -0.251 1.251 12 H -0.183 1.183 13 C 0.006 3.994 14 C -0.166 4.166 15 C 0.001 3.999 16 N -0.356 5.356 17 C 0.345 3.655 18 O -0.461 6.461 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.088 4.088 22 C -0.030 4.030 23 O -0.128 6.128 24 C 0.204 3.796 25 O -0.187 6.187 26 N -0.268 5.268 27 C -0.092 4.092 28 C -0.043 4.043 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.256 0.744 44 H 0.197 0.803 45 H 0.200 0.800 46 H 0.316 0.684 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 23.750 2.175 -13.192 27.255 hybrid contribution 0.043 0.201 0.878 0.902 sum 23.793 2.375 -12.314 26.896 Atomic orbital electron populations 1.22083 0.97591 1.00237 1.00808 1.20705 0.92674 0.93155 0.88356 1.22046 1.00646 0.96995 1.00581 1.44400 1.53196 1.33590 1.02185 1.18522 1.39379 0.91645 0.85948 0.93227 1.25889 1.00077 1.00827 0.95005 1.69979 1.53792 1.36410 0.99451 0.86109 0.77260 0.83288 0.77358 1.20923 1.25065 1.18340 1.21178 0.89705 0.89394 0.99171 1.22136 0.94969 0.96640 1.02904 1.21294 0.79611 0.97459 1.01517 1.45792 1.05707 1.10944 1.73122 1.18368 0.85723 0.85382 0.76021 1.90782 1.84966 1.18603 1.51770 1.19638 0.91628 0.94913 1.06965 1.21204 0.97026 0.93768 0.95825 1.19933 0.87555 1.00264 1.01072 1.20431 0.80836 0.96339 1.05419 1.84492 1.19847 1.32451 1.75980 1.23078 0.87969 0.77272 0.91274 1.85219 1.06515 1.38210 1.88780 1.70844 0.97034 1.30161 1.28712 1.19523 0.92678 0.90681 1.06280 1.20252 0.87841 1.00776 0.95434 0.94697 0.90860 0.94921 0.90189 0.93028 0.91092 0.95235 0.93365 0.91508 0.95592 0.92544 0.89339 0.90838 0.93820 0.74449 0.80280 0.79967 0.68355 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.04 71.98 0.65 -4.38 16 2 C 0.16 5.26 3.36 44.99 0.15 5.41 16 3 C -0.14 -4.37 9.11 71.98 0.66 -3.71 16 4 N -0.61 -25.53 2.06 -678.06 -1.40 -26.93 16 5 C -0.22 -11.73 8.74 84.03 0.73 -11.00 16 6 H 0.05 2.88 7.17 -2.91 -0.02 2.86 16 7 C -0.02 -1.27 5.31 84.86 0.45 -0.82 16 8 N -0.95 -58.18 13.97 21.65 0.30 -57.88 16 9 Si 0.93 45.99 24.97 68.60 1.71 47.71 16 10 H -0.28 -13.56 6.66 99.48 0.66 -12.90 16 11 H -0.32 -16.60 7.11 99.48 0.71 -15.90 16 12 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 13 C 0.13 4.95 4.49 86.38 0.39 5.33 16 14 C -0.13 -3.84 5.65 30.59 0.17 -3.66 16 15 C 0.13 3.60 5.67 86.38 0.49 4.09 16 16 N -0.70 -16.41 5.51 -466.10 -2.57 -18.98 16 17 C 0.56 15.18 7.77 86.75 0.67 15.86 16 18 O -0.58 -21.03 16.33 -3.94 -0.06 -21.10 16 19 C -0.13 -2.74 5.87 -20.10 -0.12 -2.86 16 20 C -0.06 -0.79 9.47 22.31 0.21 -0.58 16 21 C -0.07 -0.82 9.99 22.02 0.22 -0.60 16 22 C 0.02 0.35 7.42 22.95 0.17 0.52 16 23 O -0.23 -3.40 10.78 10.05 0.11 -3.29 16 24 C 0.45 7.45 9.53 130.43 1.24 8.69 16 25 O -0.38 -3.05 13.62 -62.33 -0.85 -3.90 16 26 N -0.52 -12.77 11.38 -422.84 -4.81 -17.58 16 27 C 0.02 0.44 7.22 39.24 0.28 0.72 16 28 C -0.02 -0.56 9.64 22.75 0.22 -0.34 16 29 H 0.03 1.33 7.80 -2.38 -0.02 1.32 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 2.26 7.78 -2.38 -0.02 2.25 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.03 1.04 7.25 -2.38 -0.02 1.02 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.07 2.18 7.90 -2.39 -0.02 2.16 16 38 H 0.03 1.15 2.98 -2.39 -0.01 1.14 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.42 6.70 6.48 -92.71 -0.60 6.10 16 44 H 0.18 1.15 6.37 -2.91 -0.02 1.13 16 45 H 0.18 0.77 8.06 -2.91 -0.02 0.74 16 46 H 0.45 -2.86 9.06 -74.06 -0.67 -3.53 16 47 H 0.13 3.68 7.64 -2.91 -0.02 3.66 16 Total: -1.00 -81.07 389.72 -1.26 -82.33 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -0.29 Total: 6.94 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.60 Total: 12.67 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -8.47 Total: -121.37 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.81 Total: -28.28 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.71 Total: 47.71 kcal Total: -81.07 -1.26 -82.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664514113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.638 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds