Wall clock time and date at job start Wed Apr 1 2020 04:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47022 * 330.70013 * 3 2 1 5 5 C 1.34772 * 119.99871 * 270.00340 * 4 3 2 6 6 O 1.21278 * 119.99819 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00012 * 359.97438 * 5 4 3 8 8 C 1.53004 * 109.46763 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.54166 * 56.39530 * 8 7 5 10 10 C 1.54231 * 110.60507 * 179.41120 * 8 7 5 11 11 C 1.51315 * 103.55496 * 118.51470 * 10 8 7 12 12 O 1.21229 * 125.39760 * 179.97438 * 11 10 8 13 13 N 1.33875 * 109.20917 * 0.02562 * 11 10 8 14 14 C 1.33883 * 114.47353 * 359.97438 * 13 11 10 15 15 O 1.21222 * 125.39460 * 180.02562 * 14 13 11 16 16 C 1.46498 * 119.99694 * 89.99728 * 4 3 2 17 17 C 1.53045 * 109.45800 * 60.00309 * 16 4 3 18 18 C 1.53197 * 109.33523 * 178.59334 * 17 16 4 19 19 N 1.46988 * 108.74054 * 54.62539 * 18 17 16 20 20 C 1.36935 * 120.61996 * 126.38026 * 19 18 17 21 21 H 1.07998 * 120.00584 * 207.68595 * 20 19 18 22 22 C 1.38815 * 119.99415 * 27.69166 * 20 19 18 23 23 N 1.31614 * 120.00332 * 17.34621 * 22 20 19 24 24 Si 1.86808 * 119.99812 * 197.34985 * 22 20 19 25 25 H 1.48505 * 109.46884 * 89.99636 * 24 22 20 26 26 H 1.48498 * 109.47378 * 209.99899 * 24 22 20 27 27 H 1.48504 * 109.47049 * 329.99850 * 24 22 20 28 28 C 1.46930 * 118.75483 * 306.40354 * 19 18 17 29 29 C 1.53034 * 109.46549 * 299.93524 * 16 4 3 30 30 H 4.40647 * 5.51333 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.47347 * 210.70085 * 3 2 1 32 32 H 1.08998 * 109.46734 * 90.69968 * 3 2 1 33 33 H 1.08997 * 109.47591 * 300.00319 * 7 5 4 34 34 H 1.09000 * 109.47197 * 60.00906 * 7 5 4 35 35 H 1.08997 * 110.60762 * 237.03317 * 10 8 7 36 36 H 1.09006 * 110.60940 * 0.02562 * 10 8 7 37 37 H 0.97000 * 122.76512 * 179.97438 * 13 11 10 38 38 H 1.09003 * 109.45895 * 179.97438 * 16 4 3 39 39 H 1.08994 * 109.49819 * 298.55962 * 17 16 4 40 40 H 1.09001 * 109.49650 * 58.63046 * 17 16 4 41 41 H 1.09008 * 109.57889 * 174.43827 * 18 17 16 42 42 H 1.08995 * 109.59109 * 294.86129 * 18 17 16 43 43 H 0.97007 * 120.00009 * 179.97438 * 23 22 20 44 44 H 1.08994 * 109.58730 * 293.82478 * 28 19 18 45 45 H 1.08999 * 109.70895 * 173.46405 * 28 19 18 46 46 H 1.09007 * 109.49334 * 301.33622 * 29 16 4 47 47 H 1.08998 * 109.50385 * 61.39914 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2037 0.6760 5 6 3.3594 -1.1865 2.0047 6 8 3.7646 -2.1833 2.5642 7 6 3.1082 0.0718 2.7951 8 6 3.4401 -0.1764 4.2679 9 1 4.4677 -0.5237 4.3751 10 6 3.2059 1.1011 5.0998 11 6 2.1331 0.6910 6.0850 12 8 1.6501 1.4071 6.9356 13 7 1.8027 -0.5882 5.8692 14 6 2.4754 -1.1741 4.8708 15 8 2.3339 -2.3218 4.5074 16 6 3.3795 -2.4267 -0.0925 17 6 4.4343 -2.1514 -1.1667 18 6 4.7136 -3.4407 -1.9456 19 7 3.4421 -3.9621 -2.4672 20 6 3.2969 -4.2412 -3.7999 21 1 2.3214 -4.1867 -4.2600 22 6 4.4038 -4.5944 -4.5595 23 7 5.5091 -4.9929 -3.9664 24 14 4.3247 -4.5040 -6.4237 25 1 4.7569 -3.1561 -6.8727 26 1 5.2231 -5.5320 -7.0078 27 1 2.9310 -4.7520 -6.8726 28 6 2.3297 -4.1778 -1.5318 29 6 2.0780 -2.8799 -0.7577 30 1 -1.0498 -0.0002 0.0003 31 1 3.0090 0.8844 0.5247 32 1 3.0093 0.0134 -1.0276 33 1 3.7383 0.8740 2.4112 34 1 2.0602 0.3565 2.7015 35 1 4.1171 1.3905 5.6233 36 1 2.8525 1.9133 4.4645 37 1 1.1311 -1.0525 6.3930 38 1 3.7375 -3.2100 0.5757 39 1 4.0666 -1.3860 -1.8500 40 1 5.3536 -1.8058 -0.6938 41 1 5.3895 -3.2280 -2.7739 42 1 5.1660 -4.1778 -1.2822 43 1 6.2825 -5.2400 -4.4973 44 1 2.5878 -4.9749 -0.8347 45 1 1.4320 -4.4530 -2.0854 46 1 1.3201 -3.0533 0.0065 47 1 1.7320 -2.1074 -1.4444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716812543.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:09 Heat of formation + Delta-G solvation = -40.765030 kcal Electronic energy + Delta-G solvation = -31244.094681 eV Core-core repulsion = 27007.647102 eV Total energy + Delta-G solvation = -4236.447579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.84558 -41.16956 -39.66358 -38.92943 -36.95323 -36.93308 -34.87722 -34.29172 -33.44616 -31.90521 -31.45193 -29.59373 -28.11393 -27.00988 -25.98060 -23.91397 -23.76828 -22.66486 -21.89650 -20.80359 -20.50871 -19.13897 -18.89449 -18.54659 -17.92393 -17.78327 -17.38291 -16.99954 -16.65914 -16.51585 -15.84417 -15.62392 -15.39435 -15.28459 -15.05441 -14.92226 -14.75468 -14.49071 -14.27394 -14.19491 -14.13241 -13.68952 -13.59090 -13.24959 -13.03269 -12.92347 -12.63545 -12.60191 -12.19691 -12.13482 -12.02017 -11.93454 -11.70455 -11.50621 -11.37356 -11.37262 -11.28633 -11.05269 -10.99986 -10.58130 -10.56091 -9.70214 -8.72587 -7.87763 -5.33766 0.51498 1.48263 1.49068 1.51498 1.58741 1.74958 1.79246 1.83412 1.96652 2.38876 2.51604 3.16602 3.24101 3.27601 3.37594 3.57402 3.63657 3.70478 3.78020 3.99744 4.08923 4.27802 4.31267 4.36347 4.44969 4.50024 4.57900 4.62521 4.71204 4.83184 4.84249 4.85751 4.93468 5.02901 5.04372 5.06181 5.13174 5.17651 5.27929 5.46534 5.60277 5.63671 5.67445 5.71355 6.34104 6.37893 6.47796 6.75564 6.89451 7.13513 7.28747 7.82865 8.36337 9.19257 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002489 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.772696 B =11248.848937 C =11603.831062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.227 4.227 3 C 0.209 3.791 4 N -0.603 5.603 5 C 0.496 3.504 6 O -0.557 6.557 7 C -0.121 4.121 8 C -0.104 4.104 9 H 0.137 0.863 10 C -0.134 4.134 11 C 0.532 3.468 12 O -0.525 6.525 13 N -0.683 5.683 14 C 0.518 3.482 15 O -0.498 6.498 16 C 0.158 3.842 17 C -0.126 4.126 18 C 0.180 3.820 19 N -0.607 5.607 20 C -0.263 4.263 21 H 0.068 0.932 22 C -0.050 4.050 23 N -0.936 5.936 24 Si 0.970 3.030 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.270 1.270 28 C 0.144 3.856 29 C -0.114 4.114 30 H 0.235 0.765 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.112 0.888 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.063 0.937 42 H -0.012 1.012 43 H 0.251 0.749 44 H 0.002 0.998 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.546 20.738 15.928 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.228 4.228 3 C 0.088 3.912 4 N -0.335 5.335 5 C 0.285 3.715 6 O -0.434 6.434 7 C -0.161 4.161 8 C -0.126 4.126 9 H 0.155 0.845 10 C -0.173 4.173 11 C 0.323 3.677 12 O -0.399 6.399 13 N -0.348 5.348 14 C 0.306 3.694 15 O -0.368 6.368 16 C 0.054 3.946 17 C -0.165 4.165 18 C 0.053 3.947 19 N -0.331 5.331 20 C -0.393 4.393 21 H 0.085 0.915 22 C -0.245 4.245 23 N -0.582 5.582 24 Si 0.798 3.202 25 H -0.207 1.207 26 H -0.224 1.224 27 H -0.195 1.195 28 C 0.018 3.982 29 C -0.153 4.153 30 H 0.252 0.748 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.182 0.818 34 H 0.130 0.870 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.252 0.748 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.006 0.994 43 H 0.060 0.940 44 H 0.020 0.980 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.369 19.973 16.310 26.340 hybrid contribution -0.604 -1.454 -0.696 1.722 sum -5.973 18.519 15.614 24.949 Atomic orbital electron populations 1.25611 0.96841 0.98648 0.99718 1.23915 0.95589 1.01806 1.01520 1.18781 0.83340 0.88188 1.00909 1.48153 1.65310 1.12493 1.07519 1.21428 0.76989 0.91191 0.81879 1.90811 1.46041 1.37228 1.69321 1.21826 1.06582 0.96415 0.91231 1.21905 1.01605 0.93933 0.95151 0.84542 1.22703 0.99845 0.98132 0.96579 1.21363 0.82647 0.80035 0.83672 1.90815 1.57095 1.56281 1.35737 1.44973 1.39902 1.15451 1.34499 1.21371 0.81236 0.88055 0.78759 1.90916 1.65230 1.18866 1.61815 1.20699 0.95139 0.86712 0.92063 1.22283 0.98113 0.99212 0.96923 1.20575 0.87805 0.90915 0.95365 1.44349 1.10303 1.74348 1.04072 1.19514 0.94777 1.39864 0.85103 0.91477 1.25824 0.97153 0.99048 1.02508 1.70202 1.04395 1.47997 1.35623 0.85236 0.77520 0.77173 0.80312 1.20678 1.22394 1.19462 1.20962 0.91306 0.94329 0.91617 1.22070 0.96422 0.98442 0.98410 0.74810 0.83563 0.87701 0.81812 0.86997 0.82696 0.82375 0.74772 0.91894 0.91098 0.91255 0.91852 0.99424 0.94017 0.98008 0.92456 0.92822 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 19.25 74.32 1.43 -2.01 16 2 C -0.23 -4.39 11.92 31.13 0.37 -4.02 16 3 C 0.21 3.53 5.16 84.57 0.44 3.96 16 4 N -0.60 -15.01 2.37 -808.17 -1.91 -16.92 16 5 C 0.50 12.09 7.34 87.66 0.64 12.73 16 6 O -0.56 -19.56 12.90 18.97 0.24 -19.31 16 7 C -0.12 -1.27 3.59 29.85 0.11 -1.16 16 8 C -0.10 -1.12 2.72 -10.93 -0.03 -1.15 16 9 H 0.14 1.50 8.03 -2.39 -0.02 1.48 16 10 C -0.13 -0.45 6.67 30.46 0.20 -0.25 16 11 C 0.53 6.64 8.55 87.99 0.75 7.40 16 12 O -0.52 -10.32 18.02 -2.87 -0.05 -10.37 16 13 N -0.68 -10.11 5.48 -427.79 -2.34 -12.45 16 14 C 0.52 10.31 7.71 87.99 0.68 10.99 16 15 O -0.50 -15.94 15.42 19.15 0.30 -15.65 16 16 C 0.16 5.43 2.48 45.02 0.11 5.55 16 17 C -0.13 -4.54 5.31 30.68 0.16 -4.37 16 18 C 0.18 8.75 5.31 86.35 0.46 9.21 16 19 N -0.61 -31.01 3.00 -698.91 -2.09 -33.10 16 20 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16 21 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 22 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 23 N -0.94 -55.68 11.19 21.65 0.24 -55.44 16 24 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 28 C 0.14 6.37 6.51 86.36 0.56 6.93 16 29 C -0.11 -4.07 4.73 30.67 0.15 -3.93 16 30 H 0.24 2.83 7.80 -4.43 -0.03 2.79 16 31 H 0.15 0.98 6.44 -2.39 -0.02 0.97 16 32 H 0.11 1.90 6.45 -2.39 -0.02 1.88 16 33 H 0.16 0.11 7.40 -2.39 -0.02 0.09 16 34 H 0.11 0.95 7.95 -2.39 -0.02 0.93 16 35 H 0.16 -0.23 8.14 -2.39 -0.02 -0.24 16 36 H 0.16 -0.42 7.74 -2.38 -0.02 -0.43 16 37 H 0.41 5.71 8.96 -92.71 -0.83 4.88 16 38 H 0.06 2.64 6.90 -2.39 -0.02 2.63 16 39 H 0.07 2.39 6.72 -2.39 -0.02 2.37 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 3.43 6.04 -2.38 -0.01 3.41 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.06 2.46 7.94 -2.39 -0.02 2.44 16 46 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 47 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 Total: -1.00 -86.47 383.35 3.84 -82.63 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.18 Total: 10.27 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.26 Total: 23.83 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -6.11 Total: -117.91 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: 0.49 Total: -45.34 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -86.47 3.84 -82.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716812543.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.868 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds