Wall clock time and date at job start Wed Apr 1 2020 04:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 N 1.46511 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99530 * 264.11294 * 4 3 2 6 6 H 1.08000 * 119.99469 * 188.00871 * 5 4 3 7 7 C 1.38809 * 120.00337 * 8.01946 * 5 4 3 8 8 N 1.31616 * 119.99923 * 25.63858 * 7 5 4 9 9 Si 1.86794 * 119.99966 * 205.64902 * 7 5 4 10 10 H 1.48505 * 109.47609 * 84.98001 * 9 7 5 11 11 H 1.48502 * 109.47168 * 204.98510 * 9 7 5 12 12 H 1.48505 * 109.47250 * 324.98234 * 9 7 5 13 13 C 1.46493 * 120.00115 * 84.11033 * 4 3 2 14 14 C 1.52998 * 109.47371 * 270.00165 * 13 4 3 15 15 N 1.46499 * 109.47065 * 179.97438 * 14 13 4 16 16 C 1.34779 * 120.00096 * 180.02562 * 15 14 13 17 17 O 1.21588 * 119.99948 * 359.97438 * 16 15 14 18 18 C 1.47602 * 120.00319 * 179.97438 * 16 15 14 19 19 C 1.39730 * 120.02790 * 359.97438 * 18 16 15 20 20 C 1.37806 * 120.05292 * 180.02562 * 19 18 16 21 21 C 1.38816 * 120.02694 * 359.93864 * 20 19 18 22 22 C 1.39669 * 120.19806 * 0.07706 * 21 20 19 23 23 C 1.37978 * 120.01565 * 359.94819 * 22 21 20 24 24 O 1.36026 * 119.45130 * 179.97438 * 22 21 20 25 25 C 1.43004 * 116.66825 * 327.21542 * 24 22 21 26 26 C 1.50750 * 109.57388 * 46.35049 * 25 24 22 27 27 O 1.21284 * 120.11235 * 148.68999 * 26 25 24 28 28 N 1.35024 * 119.79068 * 328.66036 * 26 25 24 29 29 H 1.08997 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47059 * 299.99610 * 1 2 3 31 31 H 1.08992 * 109.47141 * 60.00058 * 1 2 3 32 32 H 1.09000 * 109.47426 * 239.99792 * 2 1 3 33 33 H 1.09006 * 109.47135 * 119.99855 * 2 1 3 34 34 H 1.08995 * 109.47279 * 60.00350 * 3 2 1 35 35 H 1.08999 * 109.47397 * 299.99774 * 3 2 1 36 36 H 0.97005 * 119.99822 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47256 * 150.00048 * 13 4 3 38 38 H 1.09005 * 109.47100 * 30.00524 * 13 4 3 39 39 H 1.09002 * 109.46786 * 60.00477 * 14 13 4 40 40 H 1.09000 * 109.47112 * 299.99828 * 14 13 4 41 41 H 0.96998 * 120.00114 * 0.02562 * 15 14 13 42 42 H 1.07990 * 119.97130 * 0.02562 * 19 18 16 43 43 H 1.08004 * 119.98619 * 179.97438 * 20 19 18 44 44 H 1.08005 * 120.11758 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.45217 * 166.37450 * 25 24 22 46 46 H 1.08996 * 109.44956 * 286.31848 * 25 24 22 47 47 H 0.97003 * 120.46234 * 181.65078 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5640 1.1789 6 1 5.2623 1.6941 1.1696 7 6 3.5068 1.5197 2.3863 8 7 2.3566 0.8851 2.4685 9 14 4.2194 2.3609 3.8942 10 1 3.8326 3.7946 3.8905 11 1 3.6924 1.7091 5.1200 12 1 5.6999 2.2476 3.8709 13 6 4.2370 1.3125 -1.2629 14 6 4.4919 -0.1676 -1.5546 15 7 5.2234 -0.2975 -2.8173 16 6 5.5596 -1.5184 -3.2788 17 8 5.2563 -2.5119 -2.6469 18 6 6.2961 -1.6494 -4.5512 19 6 6.6445 -0.5081 -5.2781 20 6 7.3317 -0.6298 -6.4664 21 6 7.6796 -1.8867 -6.9421 22 6 7.3340 -3.0314 -6.2203 23 6 6.6455 -2.9153 -5.0302 24 8 7.6821 -4.2555 -6.7007 25 6 7.7074 -4.4034 -8.1229 26 6 8.4315 -3.2338 -8.7395 27 8 9.0585 -3.3796 -9.7674 28 7 8.3794 -2.0230 -8.1441 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8789 0.8545 3.3122 37 1 5.1895 1.8370 -1.1863 38 1 3.6476 1.7459 -2.0710 39 1 3.5394 -0.6920 -1.6313 40 1 5.0814 -0.6009 -0.7466 41 1 5.4657 0.4951 -3.3212 42 1 6.3751 0.4701 -4.9084 43 1 7.6001 0.2530 -7.0277 44 1 6.3770 -3.7994 -4.4709 45 1 8.2236 -5.3277 -8.3826 46 1 6.6862 -4.4392 -8.5023 47 1 8.8218 -1.2584 -8.5449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731866786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:55 Heat of formation + Delta-G solvation = -47.624511 kcal Electronic energy + Delta-G solvation = -29635.948148 eV Core-core repulsion = 25399.203120 eV Total energy + Delta-G solvation = -4236.745028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.94471 -39.96303 -38.95930 -37.69714 -36.60065 -35.55570 -34.51552 -31.97020 -31.59963 -31.10942 -30.46800 -28.53968 -27.61704 -25.52639 -24.66457 -23.94068 -22.96540 -21.30626 -20.87883 -20.19104 -19.87215 -19.26355 -18.34978 -17.71380 -17.06552 -16.84023 -16.40632 -15.80204 -15.63526 -15.14766 -15.03808 -14.97407 -14.64104 -14.36514 -14.14464 -13.97206 -13.64612 -13.57133 -13.31971 -12.99041 -12.90222 -12.69669 -12.40247 -11.89942 -11.75560 -11.60402 -11.34796 -11.23281 -11.05394 -10.87516 -10.64016 -10.62604 -10.41495 -9.99369 -9.97262 -9.90407 -9.69221 -9.25155 -9.19989 -8.72899 -8.42829 -8.36018 -6.96352 -5.80450 -3.12184 0.25942 0.79843 1.65258 2.18444 2.65497 2.78467 3.34869 3.39045 3.42181 3.46759 3.47516 3.58519 4.07554 4.39655 4.46274 4.52177 4.58589 4.59156 4.82061 4.90382 5.28038 5.29338 5.46709 5.49997 5.60705 5.78624 5.83051 5.84912 5.97196 6.05070 6.16839 6.21054 6.23265 6.27142 6.52198 6.61072 6.64668 6.66832 6.75899 6.83556 6.98755 7.17755 7.19121 7.26129 7.65192 7.68603 7.77409 8.09350 8.30662 8.37371 9.19516 9.81163 10.25141 11.22863 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.001911 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.958975 B =14647.946227 C =15075.023556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.257 4.257 6 H 0.075 0.925 7 C 0.001 3.999 8 N -0.890 5.890 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.089 3.911 15 N -0.717 5.717 16 C 0.551 3.449 17 O -0.534 6.534 18 C -0.116 4.116 19 C -0.074 4.074 20 C -0.129 4.129 21 C 0.112 3.888 22 C 0.068 3.932 23 C -0.048 4.048 24 O -0.298 6.298 25 C 0.050 3.950 26 C 0.492 3.508 27 O -0.510 6.510 28 N -0.658 5.658 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.030 0.970 32 H 0.021 0.979 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.003 0.997 36 H 0.253 0.747 37 H 0.050 0.950 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.394 0.606 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.102 0.898 47 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.612 -3.534 -21.206 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.385 4.385 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.014 3.986 14 C -0.037 4.037 15 N -0.368 5.368 16 C 0.336 3.664 17 O -0.412 6.412 18 C -0.120 4.120 19 C -0.094 4.094 20 C -0.150 4.150 21 C 0.015 3.985 22 C 0.021 3.979 23 C -0.068 4.068 24 O -0.212 6.212 25 C -0.028 4.028 26 C 0.279 3.721 27 O -0.384 6.384 28 N -0.304 5.304 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.021 0.979 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.228 0.772 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.120 0.880 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 7.607 -4.666 -20.992 22.811 hybrid contribution 0.652 1.148 0.185 1.333 sum 8.259 -3.519 -20.808 22.662 Atomic orbital electron populations 1.21626 0.98572 0.99339 0.99993 1.22229 0.92922 1.00471 1.01412 1.20934 0.81502 0.94535 0.98416 1.44248 1.01920 1.83555 1.01376 1.19257 0.92240 1.43591 0.83459 0.90742 1.24728 0.97587 1.00055 0.97316 1.70162 1.17187 1.41091 1.25012 0.86373 0.78419 0.79869 0.82600 1.21604 1.21973 1.20768 1.20958 0.96415 0.91655 0.89560 1.22817 0.96002 1.01829 0.83017 1.46125 1.57891 1.07249 1.25543 1.18047 0.79656 0.84077 0.84574 1.90817 1.54584 1.37061 1.58708 1.19924 1.02354 0.93090 0.96672 1.21178 0.96203 0.98467 0.93527 1.20545 1.01604 0.94973 0.97870 1.18198 0.97869 0.94625 0.87800 1.18391 1.01039 0.82728 0.95718 1.20608 0.93688 0.98600 0.93865 1.86319 1.85207 1.28700 1.20987 1.23230 1.02604 0.97788 0.79227 1.21616 0.81199 0.84737 0.84573 1.90827 1.40631 1.83722 1.23256 1.43665 1.52093 1.12525 1.22165 0.94797 0.92999 0.95090 0.96015 0.88323 0.89207 0.97864 0.93687 0.93168 0.93874 0.91341 0.91235 0.77154 0.84259 0.84188 0.82788 0.83463 0.87973 0.74301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.88 5.61 -26.73 -0.15 -3.03 16 3 C 0.17 3.88 4.92 -4.04 -0.02 3.86 16 4 N -0.59 -13.59 2.54 -173.24 -0.44 -14.03 16 5 C -0.26 -6.58 9.70 -15.06 -0.15 -6.72 16 6 H 0.07 1.88 7.94 -52.49 -0.42 1.47 16 7 C 0.00 0.03 4.89 -17.43 -0.09 -0.06 16 8 N -0.89 -23.84 8.62 55.49 0.48 -23.36 16 9 Si 0.90 20.94 29.62 -169.99 -5.04 15.90 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.14 2.59 5.82 -4.05 -0.02 2.57 16 14 C 0.09 1.59 5.88 -4.04 -0.02 1.56 16 15 N -0.72 -9.79 5.50 -61.33 -0.34 -10.13 16 16 C 0.55 8.12 7.76 -12.44 -0.10 8.03 16 17 O -0.53 -10.23 16.34 5.29 0.09 -10.14 16 18 C -0.12 -1.27 5.88 -104.94 -0.62 -1.89 16 19 C -0.07 -0.57 9.53 -39.18 -0.37 -0.94 16 20 C -0.13 -0.83 9.92 -39.53 -0.39 -1.22 16 21 C 0.11 0.88 6.55 -83.50 -0.55 0.33 16 22 C 0.07 0.64 6.43 -39.14 -0.25 0.39 16 23 C -0.05 -0.52 9.53 -39.10 -0.37 -0.89 16 24 O -0.30 -2.70 10.45 -19.82 -0.21 -2.90 16 25 C 0.05 0.32 7.17 36.03 0.26 0.57 16 26 C 0.49 4.11 7.93 -10.85 -0.09 4.02 16 27 O -0.51 -5.77 17.95 5.55 0.10 -5.67 16 28 N -0.66 -4.63 5.45 -9.66 -0.05 -4.68 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.46 5.97 -51.93 -0.31 0.15 16 33 H 0.10 2.53 6.33 -51.93 -0.33 2.21 16 34 H 0.09 2.29 5.85 -51.93 -0.30 1.98 16 35 H 0.00 0.07 7.98 -51.93 -0.41 -0.35 16 36 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.04 0.70 7.95 -51.93 -0.41 0.28 16 39 H 0.07 1.37 5.92 -51.93 -0.31 1.06 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.39 3.91 6.49 -40.82 -0.26 3.64 16 42 H 0.14 0.75 6.38 -52.49 -0.33 0.41 16 43 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.15 1.79 7.65 -52.48 -0.40 1.39 16 45 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.42 2.13 8.88 -40.82 -0.36 1.76 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -32.41 385.80 -8.52 -40.93 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.37 Total: 3.92 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.56 Total: 4.35 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.35 Total: -52.20 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.02 Total: -18.72 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.04 Total: 15.90 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.41 -8.52 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.699 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds