Wall clock time and date at job start Wed Apr 1 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47059 * 2 1 4 4 N 1.46511 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99530 * 264.11294 * 4 3 2 6 6 H 1.08000 * 119.99469 * 188.00871 * 5 4 3 7 7 C 1.38809 * 120.00337 * 8.01946 * 5 4 3 8 8 N 1.31616 * 119.99923 * 25.63858 * 7 5 4 9 9 Si 1.86794 * 119.99966 * 205.64902 * 7 5 4 10 10 H 1.48505 * 109.47609 * 84.98001 * 9 7 5 11 11 H 1.48502 * 109.47168 * 204.98510 * 9 7 5 12 12 H 1.48505 * 109.47250 * 324.98234 * 9 7 5 13 13 C 1.46493 * 120.00115 * 84.11033 * 4 3 2 14 14 C 1.52998 * 109.47371 * 270.00165 * 13 4 3 15 15 N 1.46499 * 109.47065 * 179.97438 * 14 13 4 16 16 C 1.34779 * 120.00096 * 180.02562 * 15 14 13 17 17 O 1.21588 * 119.99948 * 359.97438 * 16 15 14 18 18 C 1.47602 * 120.00319 * 179.97438 * 16 15 14 19 19 C 1.39730 * 120.02790 * 359.97438 * 18 16 15 20 20 C 1.37806 * 120.05292 * 180.02562 * 19 18 16 21 21 C 1.38816 * 120.02694 * 359.93864 * 20 19 18 22 22 C 1.39669 * 120.19806 * 0.07706 * 21 20 19 23 23 C 1.37978 * 120.01565 * 359.94819 * 22 21 20 24 24 O 1.36026 * 119.45130 * 179.97438 * 22 21 20 25 25 C 1.43004 * 116.66825 * 327.21542 * 24 22 21 26 26 C 1.50750 * 109.57388 * 46.35049 * 25 24 22 27 27 O 1.21284 * 120.11235 * 148.68999 * 26 25 24 28 28 N 1.35024 * 119.79068 * 328.66036 * 26 25 24 29 29 H 1.08997 * 109.46949 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47059 * 299.99610 * 1 2 3 31 31 H 1.08992 * 109.47141 * 60.00058 * 1 2 3 32 32 H 1.09000 * 109.47426 * 239.99792 * 2 1 3 33 33 H 1.09006 * 109.47135 * 119.99855 * 2 1 3 34 34 H 1.08995 * 109.47279 * 60.00350 * 3 2 1 35 35 H 1.08999 * 109.47397 * 299.99774 * 3 2 1 36 36 H 0.97005 * 119.99822 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.47256 * 150.00048 * 13 4 3 38 38 H 1.09005 * 109.47100 * 30.00524 * 13 4 3 39 39 H 1.09002 * 109.46786 * 60.00477 * 14 13 4 40 40 H 1.09000 * 109.47112 * 299.99828 * 14 13 4 41 41 H 0.96998 * 120.00114 * 0.02562 * 15 14 13 42 42 H 1.07990 * 119.97130 * 0.02562 * 19 18 16 43 43 H 1.08004 * 119.98619 * 179.97438 * 20 19 18 44 44 H 1.08005 * 120.11758 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.45217 * 166.37450 * 25 24 22 46 46 H 1.08996 * 109.44956 * 286.31848 * 25 24 22 47 47 H 0.97003 * 120.46234 * 181.65078 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.5640 1.1789 6 1 5.2623 1.6941 1.1696 7 6 3.5068 1.5197 2.3863 8 7 2.3566 0.8851 2.4685 9 14 4.2194 2.3609 3.8942 10 1 3.8326 3.7946 3.8905 11 1 3.6924 1.7091 5.1200 12 1 5.6999 2.2476 3.8709 13 6 4.2370 1.3125 -1.2629 14 6 4.4919 -0.1676 -1.5546 15 7 5.2234 -0.2975 -2.8173 16 6 5.5596 -1.5184 -3.2788 17 8 5.2563 -2.5119 -2.6469 18 6 6.2961 -1.6494 -4.5512 19 6 6.6445 -0.5081 -5.2781 20 6 7.3317 -0.6298 -6.4664 21 6 7.6796 -1.8867 -6.9421 22 6 7.3340 -3.0314 -6.2203 23 6 6.6455 -2.9153 -5.0302 24 8 7.6821 -4.2555 -6.7007 25 6 7.7074 -4.4034 -8.1229 26 6 8.4315 -3.2338 -8.7395 27 8 9.0585 -3.3796 -9.7674 28 7 8.3794 -2.0230 -8.1441 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 1.8789 0.8545 3.3122 37 1 5.1895 1.8370 -1.1863 38 1 3.6476 1.7459 -2.0710 39 1 3.5394 -0.6920 -1.6313 40 1 5.0814 -0.6009 -0.7466 41 1 5.4657 0.4951 -3.3212 42 1 6.3751 0.4701 -4.9084 43 1 7.6001 0.2530 -7.0277 44 1 6.3770 -3.7994 -4.4709 45 1 8.2236 -5.3277 -8.3826 46 1 6.6862 -4.4392 -8.5023 47 1 8.8218 -1.2584 -8.5449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731866786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:54 Heat of formation + Delta-G solvation = -70.394092 kcal Electronic energy + Delta-G solvation = -29636.935511 eV Core-core repulsion = 25399.203120 eV Total energy + Delta-G solvation = -4237.732391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59879 -40.99630 -39.79154 -38.50117 -38.20850 -36.28038 -35.93571 -33.71512 -33.22886 -31.82455 -31.37164 -29.55534 -28.66405 -27.33342 -25.71104 -24.92351 -24.09136 -22.44035 -22.27973 -21.71159 -20.81253 -20.09711 -19.01314 -18.76865 -18.47798 -17.76188 -17.25354 -16.95749 -16.67562 -16.47126 -16.30722 -15.77935 -15.64004 -15.43376 -15.40745 -15.05730 -14.99202 -14.62641 -14.50626 -14.27378 -14.10734 -13.95134 -13.60094 -13.39149 -12.99025 -12.77968 -12.62158 -12.59264 -12.38600 -12.34206 -12.15844 -11.96034 -11.78153 -11.66335 -11.51681 -11.29538 -11.14658 -11.03286 -10.29652 -10.07175 -9.84835 -9.13315 -8.82433 -7.76720 -5.08696 -0.49160 0.14478 0.97986 1.51369 1.54453 1.60016 1.60348 1.81004 1.97855 2.33526 2.60257 2.70428 2.84034 3.31620 3.46071 3.63336 3.85987 3.94253 3.98856 4.06781 4.12823 4.26739 4.29074 4.40302 4.56012 4.63424 4.68294 4.73907 4.83515 4.88403 4.95926 4.99851 5.11294 5.16505 5.18849 5.29715 5.31548 5.40668 5.48499 5.49640 5.56548 5.63120 5.69211 5.91544 6.11562 6.23174 6.39995 6.59094 6.60906 7.24156 7.26412 7.96287 8.34821 9.24110 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021305 B = 0.001911 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.958975 B =14647.946227 C =15075.023556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.175 3.825 4 N -0.607 5.607 5 C -0.261 4.261 6 H 0.074 0.926 7 C -0.049 4.049 8 N -0.909 5.909 9 Si 0.953 3.047 10 H -0.288 1.288 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.145 3.855 14 C 0.110 3.890 15 N -0.701 5.701 16 C 0.550 3.450 17 O -0.589 6.589 18 C -0.132 4.132 19 C -0.060 4.060 20 C -0.113 4.113 21 C 0.119 3.881 22 C 0.059 3.941 23 C -0.063 4.063 24 O -0.313 6.313 25 C 0.047 3.953 26 C 0.492 3.508 27 O -0.542 6.542 28 N -0.648 5.648 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.245 0.755 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.030 0.970 41 H 0.416 0.584 42 H 0.170 0.830 43 H 0.181 0.819 44 H 0.133 0.867 45 H 0.167 0.833 46 H 0.124 0.876 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -1.568 -24.018 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.050 3.950 4 N -0.328 5.328 5 C -0.390 4.390 6 H 0.092 0.908 7 C -0.244 4.244 8 N -0.555 5.555 9 Si 0.783 3.217 10 H -0.215 1.215 11 H -0.231 1.231 12 H -0.203 1.203 13 C 0.017 3.983 14 C -0.017 4.017 15 N -0.354 5.354 16 C 0.338 3.662 17 O -0.471 6.471 18 C -0.137 4.137 19 C -0.079 4.079 20 C -0.133 4.133 21 C 0.022 3.978 22 C 0.013 3.987 23 C -0.083 4.083 24 O -0.228 6.228 25 C -0.031 4.031 26 C 0.280 3.720 27 O -0.419 6.419 28 N -0.296 5.296 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.255 0.745 42 H 0.187 0.813 43 H 0.199 0.801 44 H 0.151 0.849 45 H 0.184 0.816 46 H 0.142 0.858 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.484 -2.647 -23.852 25.454 hybrid contribution 0.463 0.503 0.929 1.153 sum 8.947 -2.144 -22.923 24.700 Atomic orbital electron populations 1.21529 0.96223 1.00293 1.00635 1.22029 0.95001 0.99716 0.99369 1.20813 0.81648 0.94584 0.97978 1.44433 1.02321 1.83794 1.02238 1.19490 0.92386 1.42534 0.84626 0.90793 1.25348 0.98420 1.01097 0.99566 1.70335 1.18190 1.42142 1.24828 0.85499 0.77866 0.78681 0.79673 1.21487 1.23066 1.20262 1.21110 0.97208 0.91508 0.88439 1.22215 0.94571 1.01143 0.83758 1.45782 1.57184 1.08181 1.24218 1.18632 0.78904 0.83277 0.85380 1.90789 1.56827 1.38854 1.60614 1.19586 1.03933 0.94476 0.95661 1.21453 0.94953 0.98314 0.93193 1.20939 0.99638 0.95583 0.97114 1.18308 0.97203 0.94700 0.87603 1.18371 1.01201 0.83606 0.95564 1.20471 0.94996 0.98149 0.94731 1.86303 1.85203 1.28766 1.22484 1.23493 1.03917 0.97858 0.77783 1.21905 0.80614 0.85399 0.84063 1.90819 1.42100 1.84253 1.24742 1.43609 1.51586 1.12729 1.21644 0.93734 0.94073 0.92604 0.95806 0.92510 0.92221 0.95404 0.94554 0.91633 0.90750 0.93705 0.95164 0.74498 0.81316 0.80138 0.84930 0.81597 0.85850 0.73004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.91 71.98 0.71 -4.07 16 2 C -0.12 -5.40 5.61 30.59 0.17 -5.22 16 3 C 0.17 7.89 4.92 86.38 0.42 8.31 16 4 N -0.61 -27.73 2.54 -702.00 -1.78 -29.51 16 5 C -0.26 -13.42 9.70 84.03 0.81 -12.61 16 6 H 0.07 3.74 7.94 -2.91 -0.02 3.71 16 7 C -0.05 -2.59 4.89 84.86 0.41 -2.18 16 8 N -0.91 -50.21 8.62 21.65 0.19 -50.03 16 9 Si 0.95 43.78 29.62 68.60 2.03 45.81 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 C 0.14 5.00 5.82 86.38 0.50 5.50 16 14 C 0.11 3.94 5.88 86.38 0.51 4.45 16 15 N -0.70 -18.27 5.50 -466.20 -2.57 -20.83 16 16 C 0.55 16.25 7.76 86.71 0.67 16.93 16 17 O -0.59 -23.80 16.34 -3.99 -0.07 -23.86 16 18 C -0.13 -2.76 5.88 -20.07 -0.12 -2.87 16 19 C -0.06 -0.70 9.53 22.53 0.21 -0.48 16 20 C -0.11 -0.94 9.92 22.31 0.22 -0.72 16 21 C 0.12 1.51 6.55 38.36 0.25 1.76 16 22 C 0.06 1.05 6.43 22.55 0.15 1.20 16 23 C -0.06 -1.39 9.53 22.58 0.22 -1.17 16 24 O -0.31 -5.40 10.45 -93.85 -0.98 -6.39 16 25 C 0.05 0.52 7.17 71.25 0.51 1.03 16 26 C 0.49 7.26 7.93 87.63 0.70 7.96 16 27 O -0.54 -11.48 17.95 -3.04 -0.05 -11.53 16 28 N -0.65 -7.24 5.45 -302.71 -1.65 -8.89 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.02 1.02 5.97 -2.39 -0.01 1.00 16 33 H 0.06 3.02 6.33 -2.38 -0.02 3.01 16 34 H 0.06 3.07 5.85 -2.39 -0.01 3.06 16 35 H 0.03 1.11 7.98 -2.39 -0.02 1.09 16 36 H 0.24 13.41 8.31 -92.70 -0.77 12.64 16 37 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 38 H 0.07 2.14 7.95 -2.38 -0.02 2.12 16 39 H 0.04 1.83 5.92 -2.39 -0.01 1.82 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.42 6.90 6.49 -92.71 -0.60 6.29 16 42 H 0.17 0.91 6.38 -2.92 -0.02 0.89 16 43 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 44 H 0.13 3.38 7.65 -2.91 -0.02 3.36 16 45 H 0.17 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.43 2.90 8.88 -92.71 -0.82 2.07 16 Total: -1.00 -74.79 385.80 1.09 -73.71 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.39 Total: 13.72 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 6.36 Total: 17.80 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -5.81 Total: -109.26 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.10 Total: -41.78 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -74.79 1.09 -73.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.312 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds