Wall clock time and date at job start Wed Apr 1 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47449 * 2 1 4 4 N 1.46500 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99964 * 263.95361 * 4 3 2 6 6 H 1.08003 * 119.99668 * 188.66190 * 5 4 3 7 7 C 1.38808 * 120.00302 * 8.65847 * 5 4 3 8 8 N 1.31622 * 119.99833 * 29.83000 * 7 5 4 9 9 Si 1.86799 * 120.00429 * 209.82672 * 7 5 4 10 10 H 1.48499 * 109.47120 * 94.99301 * 9 7 5 11 11 H 1.48502 * 109.47430 * 214.99276 * 9 7 5 12 12 H 1.48502 * 109.47175 * 334.99352 * 9 7 5 13 13 C 1.46501 * 119.99780 * 83.95562 * 4 3 2 14 14 C 1.53005 * 109.46905 * 269.99422 * 13 4 3 15 15 N 1.46501 * 109.46905 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99874 * 180.02562 * 15 14 13 17 17 O 1.21594 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.47519 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.39871 * 120.26136 * 353.94253 * 18 16 15 20 20 C 1.37768 * 120.03615 * 180.02562 * 19 18 16 21 21 C 1.38614 * 120.46951 * 359.97210 * 20 19 18 22 22 C 1.38285 * 120.22321 * 0.02562 * 21 20 19 23 23 C 1.39414 * 119.95387 * 359.75178 * 22 21 20 24 24 N 1.39500 * 119.40056 * 179.62957 * 23 22 21 25 25 C 1.35081 * 118.99872 * 16.03622 * 24 23 22 26 26 O 1.21280 * 120.13805 * 181.36461 * 25 24 23 27 27 C 1.50767 * 119.72362 * 1.39117 * 25 24 23 28 28 O 1.36017 * 120.61879 * 180.08194 * 22 21 20 29 29 H 1.09002 * 109.46958 * 59.99356 * 1 2 3 30 30 H 1.08999 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47025 * 300.00169 * 1 2 3 32 32 H 1.09006 * 109.47106 * 240.00138 * 2 1 3 33 33 H 1.09002 * 109.46958 * 120.00644 * 2 1 3 34 34 H 1.09000 * 109.46460 * 60.00174 * 3 2 1 35 35 H 1.08998 * 109.47150 * 300.00039 * 3 2 1 36 36 H 0.97005 * 119.99752 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46757 * 150.00204 * 13 4 3 38 38 H 1.08998 * 109.47151 * 29.99550 * 13 4 3 39 39 H 1.09005 * 109.46637 * 60.00294 * 14 13 4 40 40 H 1.08998 * 109.47321 * 300.00025 * 14 13 4 41 41 H 0.96996 * 120.00359 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.98444 * 359.97438 * 19 18 16 43 43 H 1.08000 * 119.76970 * 179.97438 * 20 19 18 44 44 H 1.07997 * 119.88677 * 180.02562 * 21 20 19 45 45 H 0.97005 * 120.53017 * 195.75492 * 24 23 22 46 46 H 1.08999 * 109.44447 * 208.71039 * 27 25 24 47 47 H 1.08997 * 109.43050 * 88.76901 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5674 1.1802 6 1 5.2600 1.7080 1.1710 7 6 3.5066 1.5136 2.3876 8 7 2.4055 0.7997 2.4898 9 14 4.1506 2.4542 3.8675 10 1 3.4729 3.7730 3.9490 11 1 3.8761 1.6793 5.1043 12 1 5.6147 2.6579 3.7257 13 6 4.2380 1.3085 -1.2608 14 6 4.4932 -0.1725 -1.5477 15 7 5.2256 -0.3064 -2.8094 16 6 5.5622 -1.5287 -3.2667 17 8 5.2583 -2.5203 -2.6319 18 6 6.3002 -1.6636 -4.5369 19 6 6.5430 -0.5399 -5.3337 20 6 7.2323 -0.6712 -6.5193 21 6 7.6905 -1.9126 -6.9322 22 6 7.4589 -3.0335 -6.1562 23 6 6.7668 -2.9154 -4.9517 24 7 6.5328 -4.0548 -4.1817 25 6 7.2445 -5.1745 -4.4360 26 8 7.0405 -6.1841 -3.7957 27 6 8.2938 -5.1636 -5.5185 28 8 7.9062 -4.2552 -6.5528 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 1.9287 0.7618 3.3337 37 1 5.1905 1.8332 -1.1849 38 1 3.6493 1.7394 -2.0706 39 1 3.5407 -0.6972 -1.6234 40 1 5.0819 -0.6034 -0.7378 41 1 5.4683 0.4846 -3.3156 42 1 6.1893 0.4310 -5.0198 43 1 7.4171 0.1992 -7.1314 44 1 8.2302 -2.0047 -7.8631 45 1 5.8720 -4.0426 -3.4716 46 1 8.3958 -6.1657 -5.9350 47 1 9.2474 -4.8472 -5.0960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731866824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:59 Heat of formation + Delta-G solvation = -45.189373 kcal Electronic energy + Delta-G solvation = -30403.162730 eV Core-core repulsion = 26166.523298 eV Total energy + Delta-G solvation = -4236.639433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88203 -39.84366 -38.93871 -37.51591 -36.66544 -35.53298 -34.45790 -32.05679 -31.83319 -30.96687 -30.26901 -28.11868 -27.90087 -25.55016 -24.57980 -23.99274 -23.02500 -21.18975 -20.92266 -20.10020 -19.88489 -19.19916 -18.01279 -17.52915 -16.96434 -16.89577 -16.35751 -15.84413 -15.37461 -15.35865 -15.14452 -14.96032 -14.67279 -14.50779 -14.06088 -13.93239 -13.60949 -13.39968 -13.18995 -12.97005 -12.73959 -12.58451 -12.35849 -12.22082 -11.68723 -11.62538 -11.41378 -11.13883 -11.11416 -10.89605 -10.67929 -10.55146 -10.44691 -10.03270 -9.98550 -9.91809 -9.72589 -9.26553 -9.18058 -8.75753 -8.40281 -8.28611 -7.01682 -5.86337 -3.14389 0.38147 0.68702 2.01937 2.52445 2.68250 2.92175 3.15146 3.36676 3.45958 3.46220 3.48600 3.65830 4.26844 4.42380 4.46940 4.54931 4.58235 4.70603 4.83167 5.03660 5.20393 5.24102 5.45017 5.49454 5.59413 5.73394 5.81078 5.91385 6.10003 6.11997 6.15877 6.22923 6.25434 6.44489 6.50955 6.58316 6.61201 6.68539 6.77450 6.90974 6.93544 7.10990 7.20558 7.53292 7.59978 7.61335 7.70982 8.07331 8.20733 8.26820 9.14987 9.77373 10.21958 11.17556 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.002375 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.617872 B =11786.241245 C =12076.875270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.173 3.827 4 N -0.589 5.589 5 C -0.264 4.264 6 H 0.075 0.925 7 C 0.006 3.994 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.143 3.857 14 C 0.086 3.914 15 N -0.709 5.709 16 C 0.557 3.443 17 O -0.545 6.545 18 C -0.144 4.144 19 C -0.074 4.074 20 C -0.121 4.121 21 C -0.083 4.083 22 C 0.061 3.939 23 C 0.158 3.842 24 N -0.648 5.648 25 C 0.484 3.516 26 O -0.506 6.506 27 C 0.048 3.952 28 O -0.300 6.300 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.022 0.978 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.006 0.994 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.397 0.603 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.435 0.565 46 H 0.147 0.853 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.022 -2.391 -21.252 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.048 3.952 4 N -0.309 5.309 5 C -0.392 4.392 6 H 0.093 0.907 7 C -0.193 4.193 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.216 1.216 11 H -0.221 1.221 12 H -0.206 1.206 13 C 0.014 3.986 14 C -0.039 4.039 15 N -0.359 5.359 16 C 0.344 3.656 17 O -0.424 6.424 18 C -0.151 4.151 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.102 4.102 22 C 0.014 3.986 23 C 0.057 3.943 24 N -0.305 5.305 25 C 0.271 3.729 26 O -0.380 6.380 27 C -0.031 4.031 28 O -0.214 6.214 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.232 0.768 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.288 0.712 46 H 0.164 0.836 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.655 -3.787 -20.454 22.933 hybrid contribution 0.076 0.653 1.129 1.306 sum 9.731 -3.134 -19.325 21.863 Atomic orbital electron populations 1.21632 0.98542 0.99427 0.99972 1.22276 0.92954 1.00444 1.01794 1.20820 0.81634 0.94540 0.98209 1.44264 1.01797 1.83369 1.01466 1.19234 0.92545 1.44079 0.83357 0.90701 1.24701 0.97907 0.99472 0.97189 1.70185 1.20135 1.37275 1.25086 0.86428 0.78417 0.80480 0.82534 1.21577 1.22052 1.20582 1.20961 0.96493 0.91476 0.89629 1.22901 0.96015 1.02097 0.82876 1.46083 1.57195 1.07079 1.25518 1.18044 0.79170 0.84193 0.84185 1.90503 1.56119 1.36905 1.58916 1.19549 1.05645 0.92176 0.97685 1.21225 0.96857 0.97367 0.93924 1.20907 0.99272 0.97065 0.96769 1.20691 0.99690 0.89364 1.00445 1.18515 1.00130 0.86405 0.93526 1.18011 0.97679 0.87094 0.91468 1.44516 1.40386 1.09099 1.36532 1.21580 0.83204 0.83112 0.85006 1.90816 1.66065 1.31074 1.50054 1.23258 0.96385 0.96132 0.87278 1.86261 1.80877 1.21785 1.32519 0.95059 0.94710 0.93060 0.95945 0.87849 0.90020 0.97533 0.93633 0.93082 0.93788 0.91194 0.91094 0.76803 0.84427 0.84098 0.83899 0.71250 0.83567 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.14 -2.98 5.63 -26.73 -0.15 -3.13 16 3 C 0.17 3.92 4.92 -4.04 -0.02 3.90 16 4 N -0.59 -13.52 2.54 -173.24 -0.44 -13.96 16 5 C -0.26 -6.77 9.66 -15.06 -0.15 -6.92 16 6 H 0.08 1.91 7.97 -52.48 -0.42 1.49 16 7 C 0.01 0.16 4.75 -17.43 -0.08 0.08 16 8 N -0.88 -23.78 8.86 55.49 0.49 -23.28 16 9 Si 0.89 20.92 29.64 -169.99 -5.04 15.88 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.14 2.59 5.82 -4.04 -0.02 2.56 16 14 C 0.09 1.54 5.87 -4.04 -0.02 1.52 16 15 N -0.71 -9.67 5.51 -61.35 -0.34 -10.01 16 16 C 0.56 8.28 7.75 -12.48 -0.10 8.19 16 17 O -0.54 -10.15 13.74 5.28 0.07 -10.08 16 18 C -0.14 -1.67 5.88 -104.89 -0.62 -2.29 16 19 C -0.07 -0.59 9.52 -39.14 -0.37 -0.96 16 20 C -0.12 -0.75 10.02 -39.61 -0.40 -1.14 16 21 C -0.08 -0.58 9.99 -39.43 -0.39 -0.98 16 22 C 0.06 0.60 6.44 -39.13 -0.25 0.35 16 23 C 0.16 1.90 6.54 -83.32 -0.54 1.36 16 24 N -0.65 -9.08 5.24 -9.50 -0.05 -9.13 16 25 C 0.48 6.32 7.94 -10.82 -0.09 6.23 16 26 O -0.51 -8.25 17.95 5.56 0.10 -8.15 16 27 C 0.05 0.40 7.17 36.04 0.26 0.66 16 28 O -0.30 -2.81 10.45 -19.80 -0.21 -3.02 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.02 0.48 5.97 -51.93 -0.31 0.17 16 33 H 0.10 2.67 6.17 -51.93 -0.32 2.35 16 34 H 0.08 2.07 6.04 -51.93 -0.31 1.76 16 35 H 0.01 0.13 7.98 -51.93 -0.41 -0.28 16 36 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 38 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 39 H 0.07 1.40 5.92 -51.93 -0.31 1.09 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.40 3.94 6.55 -40.82 -0.27 3.67 16 42 H 0.14 0.75 6.46 -52.49 -0.34 0.41 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 44 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.44 7.08 5.64 -40.82 -0.23 6.85 16 46 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -32.01 381.00 -8.51 -40.53 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.27 Total: 8.33 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.58 Total: 7.17 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.34 Total: -56.39 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.03 Total: -21.25 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.04 Total: 15.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.01 -8.51 -40.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.662 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds