Wall clock time and date at job start Wed Apr 1 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47449 * 2 1 4 4 N 1.46500 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.36934 * 119.99964 * 263.95361 * 4 3 2 6 6 H 1.08003 * 119.99668 * 188.66190 * 5 4 3 7 7 C 1.38808 * 120.00302 * 8.65847 * 5 4 3 8 8 N 1.31622 * 119.99833 * 29.83000 * 7 5 4 9 9 Si 1.86799 * 120.00429 * 209.82672 * 7 5 4 10 10 H 1.48499 * 109.47120 * 94.99301 * 9 7 5 11 11 H 1.48502 * 109.47430 * 214.99276 * 9 7 5 12 12 H 1.48502 * 109.47175 * 334.99352 * 9 7 5 13 13 C 1.46501 * 119.99780 * 83.95562 * 4 3 2 14 14 C 1.53005 * 109.46905 * 269.99422 * 13 4 3 15 15 N 1.46501 * 109.46905 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99874 * 180.02562 * 15 14 13 17 17 O 1.21594 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.47519 * 120.00043 * 180.02562 * 16 15 14 19 19 C 1.39871 * 120.26136 * 353.94253 * 18 16 15 20 20 C 1.37768 * 120.03615 * 180.02562 * 19 18 16 21 21 C 1.38614 * 120.46951 * 359.97210 * 20 19 18 22 22 C 1.38285 * 120.22321 * 0.02562 * 21 20 19 23 23 C 1.39414 * 119.95387 * 359.75178 * 22 21 20 24 24 N 1.39500 * 119.40056 * 179.62957 * 23 22 21 25 25 C 1.35081 * 118.99872 * 16.03622 * 24 23 22 26 26 O 1.21280 * 120.13805 * 181.36461 * 25 24 23 27 27 C 1.50767 * 119.72362 * 1.39117 * 25 24 23 28 28 O 1.36017 * 120.61879 * 180.08194 * 22 21 20 29 29 H 1.09002 * 109.46958 * 59.99356 * 1 2 3 30 30 H 1.08999 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47025 * 300.00169 * 1 2 3 32 32 H 1.09006 * 109.47106 * 240.00138 * 2 1 3 33 33 H 1.09002 * 109.46958 * 120.00644 * 2 1 3 34 34 H 1.09000 * 109.46460 * 60.00174 * 3 2 1 35 35 H 1.08998 * 109.47150 * 300.00039 * 3 2 1 36 36 H 0.97005 * 119.99752 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.46757 * 150.00204 * 13 4 3 38 38 H 1.08998 * 109.47151 * 29.99550 * 13 4 3 39 39 H 1.09005 * 109.46637 * 60.00294 * 14 13 4 40 40 H 1.08998 * 109.47321 * 300.00025 * 14 13 4 41 41 H 0.96996 * 120.00359 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.98444 * 359.97438 * 19 18 16 43 43 H 1.08000 * 119.76970 * 179.97438 * 20 19 18 44 44 H 1.07997 * 119.88677 * 180.02562 * 21 20 19 45 45 H 0.97005 * 120.53017 * 195.75492 * 24 23 22 46 46 H 1.08999 * 109.44447 * 208.71039 * 27 25 24 47 47 H 1.08997 * 109.43050 * 88.76901 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1892 1.5674 1.1802 6 1 5.2600 1.7080 1.1710 7 6 3.5066 1.5136 2.3876 8 7 2.4055 0.7997 2.4898 9 14 4.1506 2.4542 3.8675 10 1 3.4729 3.7730 3.9490 11 1 3.8761 1.6793 5.1043 12 1 5.6147 2.6579 3.7257 13 6 4.2380 1.3085 -1.2608 14 6 4.4932 -0.1725 -1.5477 15 7 5.2256 -0.3064 -2.8094 16 6 5.5622 -1.5287 -3.2667 17 8 5.2583 -2.5203 -2.6319 18 6 6.3002 -1.6636 -4.5369 19 6 6.5430 -0.5399 -5.3337 20 6 7.2323 -0.6712 -6.5193 21 6 7.6905 -1.9126 -6.9322 22 6 7.4589 -3.0335 -6.1562 23 6 6.7668 -2.9154 -4.9517 24 7 6.5328 -4.0548 -4.1817 25 6 7.2445 -5.1745 -4.4360 26 8 7.0405 -6.1841 -3.7957 27 6 8.2938 -5.1636 -5.5185 28 8 7.9062 -4.2552 -6.5528 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 1.9287 0.7618 3.3337 37 1 5.1905 1.8332 -1.1849 38 1 3.6493 1.7394 -2.0706 39 1 3.5407 -0.6972 -1.6234 40 1 5.0819 -0.6034 -0.7378 41 1 5.4683 0.4846 -3.3156 42 1 6.1893 0.4310 -5.0198 43 1 7.4171 0.1992 -7.1314 44 1 8.2302 -2.0047 -7.8631 45 1 5.8720 -4.0426 -3.4716 46 1 8.3958 -6.1657 -5.9350 47 1 9.2474 -4.8472 -5.0960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731866824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:58 Heat of formation + Delta-G solvation = -67.823340 kcal Electronic energy + Delta-G solvation = -30404.144213 eV Core-core repulsion = 26166.523298 eV Total energy + Delta-G solvation = -4237.620915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.70730 -40.95009 -39.88022 -38.50238 -38.13176 -36.59478 -35.74442 -33.77624 -33.37525 -32.06274 -31.01861 -29.45468 -28.77592 -27.36721 -25.77854 -24.84972 -24.29468 -22.51634 -22.25191 -21.73235 -20.79641 -20.12410 -18.90105 -18.76810 -18.37084 -17.83467 -17.40168 -16.91457 -16.77473 -16.54521 -16.22181 -15.98026 -15.73144 -15.53759 -15.49660 -15.29689 -15.00751 -14.66587 -14.46755 -14.15383 -14.08833 -13.85851 -13.49961 -13.18325 -13.06823 -12.89434 -12.79274 -12.66612 -12.42184 -12.31535 -12.18944 -11.96328 -11.83471 -11.72343 -11.62295 -11.53767 -11.08233 -10.92234 -10.36000 -10.25203 -9.76516 -9.07477 -8.88964 -7.83760 -5.12362 -0.40556 0.00524 1.16123 1.47763 1.51887 1.58267 1.62683 1.73896 1.99012 2.23270 2.56063 2.70401 2.87186 3.24389 3.42304 3.74680 3.76900 3.82574 3.96640 4.12396 4.20482 4.24861 4.29348 4.47225 4.50862 4.56436 4.62593 4.68754 4.82814 4.83213 4.94160 5.01778 5.04970 5.07457 5.20650 5.31979 5.33862 5.40217 5.46488 5.50698 5.56361 5.65908 5.75600 5.82833 6.14645 6.19094 6.33019 6.43822 6.57443 7.11486 7.20348 7.91009 8.30373 9.17730 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.002375 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.617872 B =11786.241245 C =12076.875270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.126 4.126 3 C 0.177 3.823 4 N -0.605 5.605 5 C -0.268 4.268 6 H 0.074 0.926 7 C -0.043 4.043 8 N -0.904 5.904 9 Si 0.947 3.053 10 H -0.288 1.288 11 H -0.304 1.304 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.109 3.891 15 N -0.694 5.694 16 C 0.552 3.448 17 O -0.593 6.593 18 C -0.163 4.163 19 C -0.067 4.067 20 C -0.102 4.102 21 C -0.067 4.067 22 C 0.050 3.950 23 C 0.127 3.873 24 N -0.664 5.664 25 C 0.475 3.525 26 O -0.555 6.555 27 C 0.058 3.942 28 O -0.300 6.300 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.246 0.754 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.419 0.581 42 H 0.165 0.835 43 H 0.186 0.814 44 H 0.176 0.824 45 H 0.419 0.581 46 H 0.172 0.828 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.707 0.019 -25.219 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.052 3.948 4 N -0.326 5.326 5 C -0.397 4.397 6 H 0.091 0.909 7 C -0.239 4.239 8 N -0.549 5.549 9 Si 0.777 3.223 10 H -0.215 1.215 11 H -0.232 1.232 12 H -0.199 1.199 13 C 0.018 3.982 14 C -0.018 4.018 15 N -0.345 5.345 16 C 0.341 3.659 17 O -0.476 6.476 18 C -0.169 4.169 19 C -0.086 4.086 20 C -0.120 4.120 21 C -0.086 4.086 22 C 0.003 3.997 23 C 0.028 3.972 24 N -0.318 5.318 25 C 0.264 3.736 26 O -0.433 6.433 27 C -0.020 4.020 28 O -0.214 6.214 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.258 0.742 42 H 0.183 0.817 43 H 0.203 0.797 44 H 0.194 0.806 45 H 0.267 0.733 46 H 0.190 0.810 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.389 -1.304 -24.507 27.055 hybrid contribution -0.393 -0.051 2.221 2.256 sum 10.996 -1.355 -22.286 24.888 Atomic orbital electron populations 1.21536 0.96196 1.00312 1.00689 1.22074 0.95033 0.99776 0.99690 1.20716 0.81735 0.94513 0.97848 1.44444 1.02215 1.83607 1.02292 1.19464 0.92655 1.43023 0.84577 0.90857 1.25312 0.98724 1.00507 0.99371 1.70353 1.21251 1.38362 1.24972 0.85550 0.78123 0.78991 0.79612 1.21545 1.23213 1.19877 1.21113 0.97277 0.91263 0.88538 1.22272 0.94511 1.01429 0.83585 1.45722 1.56640 1.07961 1.24194 1.18667 0.78649 0.83489 0.85110 1.90497 1.57925 1.38496 1.60633 1.19388 1.06994 0.93636 0.96902 1.21597 0.96131 0.97004 0.93864 1.21434 0.96649 0.98114 0.95800 1.21210 0.98207 0.88538 1.00641 1.18827 1.00292 0.87442 0.93104 1.18360 0.99637 0.86581 0.92621 1.44662 1.40246 1.10447 1.36481 1.22534 0.83502 0.82143 0.85436 1.90773 1.67739 1.32624 1.52197 1.23420 0.95213 0.97488 0.85870 1.86256 1.80897 1.21838 1.32445 0.92500 0.93795 0.94049 0.95822 0.92092 0.93033 0.94899 0.94459 0.91593 0.90550 0.93637 0.95229 0.74240 0.81731 0.79684 0.80618 0.73260 0.81050 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.91 71.98 0.71 -4.15 16 2 C -0.13 -5.66 5.63 30.59 0.17 -5.49 16 3 C 0.18 8.01 4.92 86.38 0.43 8.44 16 4 N -0.60 -27.79 2.54 -701.99 -1.78 -29.57 16 5 C -0.27 -13.92 9.66 84.03 0.81 -13.11 16 6 H 0.07 3.76 7.97 -2.91 -0.02 3.73 16 7 C -0.04 -2.29 4.75 84.86 0.40 -1.89 16 8 N -0.90 -50.52 8.86 21.65 0.19 -50.33 16 9 Si 0.95 43.94 29.64 68.60 2.03 45.98 16 10 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 C 0.15 5.06 5.82 86.38 0.50 5.56 16 14 C 0.11 3.95 5.87 86.38 0.51 4.46 16 15 N -0.69 -18.43 5.51 -466.26 -2.57 -21.00 16 16 C 0.55 16.73 7.75 86.69 0.67 17.40 16 17 O -0.59 -23.77 13.74 -4.01 -0.06 -23.83 16 18 C -0.16 -3.61 5.88 -20.04 -0.12 -3.73 16 19 C -0.07 -0.79 9.52 22.55 0.21 -0.57 16 20 C -0.10 -0.67 10.02 22.25 0.22 -0.45 16 21 C -0.07 -0.62 9.99 22.37 0.22 -0.40 16 22 C 0.05 0.86 6.44 22.56 0.15 1.00 16 23 C 0.13 3.01 6.54 38.60 0.25 3.26 16 24 N -0.66 -19.82 5.24 -302.20 -1.58 -21.40 16 25 C 0.47 13.00 7.94 87.63 0.70 13.70 16 26 O -0.56 -19.48 17.95 -3.03 -0.05 -19.53 16 27 C 0.06 0.90 7.17 71.26 0.51 1.41 16 28 O -0.30 -4.94 10.45 -93.75 -0.98 -5.92 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 1.03 5.97 -2.38 -0.01 1.01 16 33 H 0.06 3.29 6.17 -2.39 -0.01 3.27 16 34 H 0.05 2.65 6.04 -2.39 -0.01 2.64 16 35 H 0.03 1.30 7.98 -2.39 -0.02 1.28 16 36 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 37 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 38 H 0.08 2.20 7.95 -2.39 -0.02 2.18 16 39 H 0.05 1.88 5.92 -2.38 -0.01 1.87 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.42 7.17 6.55 -92.71 -0.61 6.56 16 42 H 0.17 0.96 6.46 -2.91 -0.02 0.94 16 43 H 0.19 -0.28 8.06 -2.91 -0.02 -0.30 16 44 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 45 H 0.42 15.07 5.64 -92.70 -0.52 14.55 16 46 H 0.17 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -77.12 381.00 1.46 -75.66 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: -0.10 Total: 24.49 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 6.35 Total: 25.46 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -5.74 Total: -122.30 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -1.09 Total: -49.28 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.98 kcal Total: -77.12 1.46 -75.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.835 kcal (2) G-P(sol) polarization free energy of solvation -77.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds