Wall clock time and date at job start Wed Apr 1 2020 04:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47349 * 2 1 4 4 N 1.46507 * 109.47285 * 119.99984 * 2 1 3 5 5 C 1.36937 * 119.99982 * 301.90341 * 4 2 1 6 6 H 1.08008 * 119.99904 * 324.85656 * 5 4 2 7 7 C 1.38809 * 120.00348 * 144.85633 * 5 4 2 8 8 N 1.31618 * 120.00006 * 157.16648 * 7 5 4 9 9 Si 1.86799 * 119.99971 * 337.16464 * 7 5 4 10 10 H 1.48508 * 109.46940 * 95.35387 * 9 7 5 11 11 H 1.48498 * 109.47365 * 215.35359 * 9 7 5 12 12 H 1.48502 * 109.47321 * 335.35725 * 9 7 5 13 13 C 1.46497 * 120.00019 * 121.89717 * 4 2 1 14 14 C 1.53000 * 109.47111 * 90.00143 * 13 4 2 15 15 C 1.52998 * 109.47349 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.34782 * 120.00063 * 180.02562 * 16 15 14 18 18 O 1.21487 * 119.99693 * 359.97438 * 17 16 15 19 19 C 1.48346 * 119.99959 * 179.97438 * 17 16 15 20 20 C 1.41716 * 126.80888 * 179.97438 * 19 17 16 21 21 C 1.37153 * 103.79457 * 179.97438 * 20 19 17 22 22 C 1.47008 * 126.85891 * 179.97438 * 21 20 19 23 23 C 1.36344 * 125.96797 * 180.02562 * 22 21 20 24 24 C 1.40699 * 106.72097 * 179.97438 * 23 22 21 25 25 C 1.34890 * 107.08359 * 0.02562 * 24 23 22 26 26 O 1.34227 * 108.73004 * 359.76247 * 25 24 23 27 27 O 1.34584 * 106.28252 * 0.02562 * 21 20 19 28 28 N 1.20867 * 111.69000 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.47061 * 305.32719 * 1 2 3 30 30 H 1.08996 * 109.47107 * 65.33307 * 1 2 3 31 31 H 1.09008 * 109.47019 * 185.32643 * 1 2 3 32 32 H 1.08999 * 109.47405 * 239.99786 * 2 1 3 33 33 H 1.09002 * 109.47642 * 175.19042 * 3 2 1 34 34 H 1.09004 * 109.47282 * 295.19169 * 3 2 1 35 35 H 1.09004 * 109.47393 * 55.18448 * 3 2 1 36 36 H 0.96998 * 120.00035 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47368 * 329.99989 * 13 4 2 38 38 H 1.08999 * 109.46999 * 210.00182 * 13 4 2 39 39 H 1.09008 * 109.47018 * 59.99671 * 14 13 4 40 40 H 1.09000 * 109.47112 * 300.00441 * 14 13 4 41 41 H 1.09001 * 109.46653 * 60.00623 * 15 14 13 42 42 H 1.08999 * 109.47213 * 300.00316 * 15 14 13 43 43 H 0.97002 * 120.00409 * 359.97438 * 16 15 14 44 44 H 1.07995 * 128.10427 * 0.23815 * 20 19 17 45 45 H 1.07996 * 126.63932 * 359.92761 * 23 22 21 46 46 H 1.08002 * 126.46110 * 179.97438 * 24 23 22 47 47 H 1.07998 * 125.63394 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6557 -0.2460 2.4396 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5442 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2673 -3.7484 3.0906 11 1 0.0770 -3.4529 4.0886 12 1 0.4039 -3.0060 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0431 15 6 5.2694 -2.6170 0.9038 16 7 6.6670 -2.1783 0.8861 17 6 7.6568 -3.0857 0.7697 18 8 7.3899 -4.2675 0.6799 19 6 9.0721 -2.6414 0.7513 20 6 10.2193 -3.4654 0.6362 21 6 11.2642 -2.5776 0.6693 22 6 12.6965 -2.8981 0.5858 23 6 13.7215 -1.9996 0.6211 24 6 14.9128 -2.7402 0.5123 25 6 14.5643 -4.0397 0.4163 26 8 13.2261 -4.1318 0.4659 27 8 10.7165 -1.3547 0.7947 28 7 9.5098 -1.4079 0.8381 29 1 -0.3633 0.5943 0.8385 30 1 -0.3633 0.4289 -0.9339 31 1 -0.3633 -1.0233 0.0954 32 1 1.8934 -0.5138 -0.8899 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9308 -0.9299 35 1 1.6080 1.9806 0.8437 36 1 1.3985 -1.3988 5.4398 37 1 2.6654 -2.3788 0.1331 38 1 2.7358 -2.5294 1.9052 39 1 4.5834 -0.8770 1.9723 40 1 4.5130 -0.7263 0.2001 41 1 5.0404 -3.1390 -0.0253 42 1 5.1106 -3.2891 1.7470 43 1 6.8802 -1.2346 0.9575 44 1 10.2608 -4.5402 0.5401 45 1 13.6355 -0.9271 0.7138 46 1 15.9171 -2.3430 0.5059 47 1 15.2489 -4.8694 0.3201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732014334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:52 Heat of formation + Delta-G solvation = 69.183722 kcal Electronic energy + Delta-G solvation = -29193.814907 eV Core-core repulsion = 24962.135064 eV Total energy + Delta-G solvation = -4231.679843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.44689 -43.08154 -39.67285 -37.15127 -35.28132 -34.46742 -33.87700 -33.15582 -32.52733 -31.75745 -29.45473 -29.20177 -26.33776 -26.12294 -24.50468 -23.85212 -23.26981 -22.29041 -21.86880 -21.35702 -20.19666 -19.43369 -19.10732 -18.26854 -17.17532 -17.01010 -16.57955 -16.54720 -15.74484 -15.72333 -15.34480 -15.09064 -14.79616 -14.37444 -13.96429 -13.81655 -13.48377 -13.36393 -13.30569 -13.06912 -12.94656 -12.38290 -12.23049 -12.13079 -11.92563 -11.82614 -11.40288 -11.23070 -11.02613 -10.87094 -10.81231 -10.74173 -10.55438 -10.44236 -10.43075 -10.27502 -9.94034 -9.69293 -9.38876 -9.10722 -8.69509 -8.48577 -6.86944 -5.98248 -3.37160 0.17320 0.98398 1.53528 1.65155 2.23058 2.78432 2.98770 3.17567 3.31384 3.48511 3.52133 3.59383 3.93146 4.36273 4.41081 4.49107 4.52600 4.77853 4.82218 4.86574 5.22621 5.28319 5.31947 5.39114 5.42930 5.44042 5.51056 5.76586 5.79449 5.84171 5.97531 6.00327 6.13636 6.17154 6.28739 6.31400 6.40647 6.43374 6.53667 6.63226 6.69620 6.72863 6.88049 7.08372 7.14436 7.28416 7.58166 7.96960 8.05734 8.39567 9.00060 9.73476 10.12639 11.17424 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.001868 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.630581 B =14987.078121 C =15494.651870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.259 4.259 6 H 0.081 0.919 7 C 0.033 3.967 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.142 3.858 14 C -0.147 4.147 15 C 0.116 3.884 16 N -0.705 5.705 17 C 0.594 3.406 18 O -0.522 6.522 19 C -0.015 4.015 20 C -0.151 4.151 21 C 0.034 3.966 22 C 0.041 3.959 23 C -0.156 4.156 24 C -0.214 4.214 25 C -0.013 4.013 26 O -0.158 6.158 27 O 0.145 5.855 28 N -0.319 5.319 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.408 0.592 44 H 0.188 0.812 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.226 -3.504 -11.165 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.387 4.387 6 H 0.098 0.902 7 C -0.167 4.167 8 N -0.542 5.542 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.232 1.232 12 H -0.194 1.194 13 C 0.016 3.984 14 C -0.187 4.187 15 C -0.007 4.007 16 N -0.356 5.356 17 C 0.376 3.624 18 O -0.397 6.397 19 C -0.173 4.173 20 C -0.173 4.173 21 C -0.029 4.029 22 C -0.009 4.009 23 C -0.176 4.176 24 C -0.233 4.233 25 C -0.082 4.082 26 O -0.054 6.054 27 O 0.065 5.935 28 N -0.018 5.018 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.243 0.757 44 H 0.205 0.795 45 H 0.179 0.821 46 H 0.176 0.824 47 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 24.034 -3.497 -10.937 26.636 hybrid contribution 0.302 -1.231 0.015 1.268 sum 24.336 -4.728 -10.922 27.091 Atomic orbital electron populations 1.22116 0.97614 1.01368 0.99960 1.20399 0.92533 0.92244 0.88865 1.22159 1.00690 0.98325 1.00031 1.44235 1.52295 1.33113 1.02622 1.18678 1.42508 0.93158 0.84396 0.90165 1.25409 0.98537 0.97675 0.95075 1.69868 1.50393 1.35402 0.98542 0.86998 0.77813 0.86773 0.77890 1.21419 1.23199 1.19446 1.21071 0.87830 0.90361 0.99156 1.22460 0.97080 0.96124 1.03074 1.21634 0.78007 0.98704 1.02338 1.46015 1.06784 1.10466 1.72345 1.16840 0.81982 0.85889 0.77668 1.90814 1.82867 1.16173 1.49815 1.23436 0.97576 0.89353 1.06886 1.22737 0.88246 1.02302 1.03984 1.20451 0.90915 0.85056 1.06467 1.18029 0.88458 0.83239 1.11223 1.22028 0.90920 1.00945 1.03660 1.21846 1.00092 0.93103 1.08277 1.24383 0.80333 0.99666 1.03835 1.84071 1.21435 1.29085 1.70769 1.84940 1.14509 1.28198 1.65805 1.74201 0.90977 1.20639 1.15952 0.92078 0.94487 0.93480 0.93265 0.93456 0.94384 0.92464 0.92803 0.94031 0.92738 0.90344 0.91993 0.91297 0.91028 0.75717 0.79463 0.82102 0.82432 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.04 37.16 0.34 -2.48 16 2 C 0.17 3.16 3.36 -67.93 -0.23 2.93 16 3 C -0.15 -2.68 9.11 37.15 0.34 -2.34 16 4 N -0.60 -13.44 2.06 -165.67 -0.34 -13.78 16 5 C -0.26 -6.87 8.74 -15.06 -0.13 -7.00 16 6 H 0.08 2.32 7.17 -52.48 -0.38 1.94 16 7 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 8 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 9 Si 0.87 22.03 24.97 -169.99 -4.24 17.79 16 10 H -0.29 -7.03 6.66 56.52 0.38 -6.66 16 11 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.14 2.92 4.49 -4.04 -0.02 2.90 16 14 C -0.15 -2.57 5.65 -26.73 -0.15 -2.72 16 15 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 16 N -0.71 -10.34 5.55 -61.09 -0.34 -10.68 16 17 C 0.59 9.12 7.85 -12.10 -0.09 9.03 16 18 O -0.52 -9.40 16.94 5.38 0.09 -9.31 16 19 C -0.01 -0.19 7.17 -82.66 -0.59 -0.78 16 20 C -0.15 -1.69 10.96 -38.65 -0.42 -2.11 16 21 C 0.03 0.34 7.30 -36.42 -0.27 0.08 16 22 C 0.04 0.36 7.17 -36.71 -0.26 0.09 16 23 C -0.16 -1.06 10.86 -39.34 -0.43 -1.49 16 24 C -0.21 -1.10 10.88 -39.84 -0.43 -1.53 16 25 C -0.01 -0.07 12.08 29.54 0.36 0.29 16 26 O -0.16 -1.27 10.67 4.55 0.05 -1.22 16 27 O 0.14 1.55 11.21 15.72 0.18 1.73 16 28 N -0.32 -3.97 11.81 33.36 0.39 -3.58 16 29 H 0.06 1.23 7.80 -51.93 -0.40 0.82 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.05 0.85 7.78 -51.93 -0.40 0.45 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 1.10 7.25 -51.93 -0.38 0.72 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.04 0.77 7.90 -51.93 -0.41 0.36 16 38 H 0.05 1.25 2.98 -51.93 -0.15 1.10 16 39 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.41 5.39 8.23 -40.82 -0.34 5.05 16 44 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 47 H 0.21 0.18 8.06 -52.49 -0.42 -0.25 16 LS Contribution 398.50 15.07 6.01 6.01 Total: -1.00 -32.35 398.50 -6.25 -38.60 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.70 Total: 3.19 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.11 Total: -2.46 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.49 Total: -54.32 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.32 Total: -8.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.24 Total: 17.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.35 -6.25 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732014334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.779 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds