Wall clock time and date at job start Wed Apr 1 2020 04:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47349 * 2 1 4 4 N 1.46507 * 109.47285 * 119.99984 * 2 1 3 5 5 C 1.36937 * 119.99982 * 301.90341 * 4 2 1 6 6 H 1.08008 * 119.99904 * 324.85656 * 5 4 2 7 7 C 1.38809 * 120.00348 * 144.85633 * 5 4 2 8 8 N 1.31618 * 120.00006 * 157.16648 * 7 5 4 9 9 Si 1.86799 * 119.99971 * 337.16464 * 7 5 4 10 10 H 1.48508 * 109.46940 * 95.35387 * 9 7 5 11 11 H 1.48498 * 109.47365 * 215.35359 * 9 7 5 12 12 H 1.48502 * 109.47321 * 335.35725 * 9 7 5 13 13 C 1.46497 * 120.00019 * 121.89717 * 4 2 1 14 14 C 1.53000 * 109.47111 * 90.00143 * 13 4 2 15 15 C 1.52998 * 109.47349 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.34782 * 120.00063 * 180.02562 * 16 15 14 18 18 O 1.21487 * 119.99693 * 359.97438 * 17 16 15 19 19 C 1.48346 * 119.99959 * 179.97438 * 17 16 15 20 20 C 1.41716 * 126.80888 * 179.97438 * 19 17 16 21 21 C 1.37153 * 103.79457 * 179.97438 * 20 19 17 22 22 C 1.47008 * 126.85891 * 179.97438 * 21 20 19 23 23 C 1.36344 * 125.96797 * 180.02562 * 22 21 20 24 24 C 1.40699 * 106.72097 * 179.97438 * 23 22 21 25 25 C 1.34890 * 107.08359 * 0.02562 * 24 23 22 26 26 O 1.34227 * 108.73004 * 359.76247 * 25 24 23 27 27 O 1.34584 * 106.28252 * 0.02562 * 21 20 19 28 28 N 1.20867 * 111.69000 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.47061 * 305.32719 * 1 2 3 30 30 H 1.08996 * 109.47107 * 65.33307 * 1 2 3 31 31 H 1.09008 * 109.47019 * 185.32643 * 1 2 3 32 32 H 1.08999 * 109.47405 * 239.99786 * 2 1 3 33 33 H 1.09002 * 109.47642 * 175.19042 * 3 2 1 34 34 H 1.09004 * 109.47282 * 295.19169 * 3 2 1 35 35 H 1.09004 * 109.47393 * 55.18448 * 3 2 1 36 36 H 0.96998 * 120.00035 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47368 * 329.99989 * 13 4 2 38 38 H 1.08999 * 109.46999 * 210.00182 * 13 4 2 39 39 H 1.09008 * 109.47018 * 59.99671 * 14 13 4 40 40 H 1.09000 * 109.47112 * 300.00441 * 14 13 4 41 41 H 1.09001 * 109.46653 * 60.00623 * 15 14 13 42 42 H 1.08999 * 109.47213 * 300.00316 * 15 14 13 43 43 H 0.97002 * 120.00409 * 359.97438 * 16 15 14 44 44 H 1.07995 * 128.10427 * 0.23815 * 20 19 17 45 45 H 1.07996 * 126.63932 * 359.92761 * 23 22 21 46 46 H 1.08002 * 126.46110 * 179.97438 * 24 23 22 47 47 H 1.07998 * 125.63394 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6557 -0.2460 2.4396 6 1 1.5323 0.8118 2.6200 7 6 1.4467 -1.1545 3.4680 8 7 1.5442 -0.7639 4.7211 9 14 1.0272 -2.9315 3.0735 10 1 2.2673 -3.7484 3.0906 11 1 0.0770 -3.4529 4.0886 12 1 0.4039 -3.0060 1.7277 13 6 2.8946 -1.8570 1.0622 14 6 4.3542 -1.3988 1.0431 15 6 5.2694 -2.6170 0.9038 16 7 6.6670 -2.1783 0.8861 17 6 7.6568 -3.0857 0.7697 18 8 7.3899 -4.2675 0.6799 19 6 9.0721 -2.6414 0.7513 20 6 10.2193 -3.4654 0.6362 21 6 11.2642 -2.5776 0.6693 22 6 12.6965 -2.8981 0.5858 23 6 13.7215 -1.9996 0.6211 24 6 14.9128 -2.7402 0.5123 25 6 14.5643 -4.0397 0.4163 26 8 13.2261 -4.1318 0.4659 27 8 10.7165 -1.3547 0.7947 28 7 9.5098 -1.4079 0.8381 29 1 -0.3633 0.5943 0.8385 30 1 -0.3633 0.4289 -0.9339 31 1 -0.3633 -1.0233 0.0954 32 1 1.8934 -0.5138 -0.8899 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9308 -0.9299 35 1 1.6080 1.9806 0.8437 36 1 1.3985 -1.3988 5.4398 37 1 2.6654 -2.3788 0.1331 38 1 2.7358 -2.5294 1.9052 39 1 4.5834 -0.8770 1.9723 40 1 4.5130 -0.7263 0.2001 41 1 5.0404 -3.1390 -0.0253 42 1 5.1106 -3.2891 1.7470 43 1 6.8802 -1.2346 0.9575 44 1 10.2608 -4.5402 0.5401 45 1 13.6355 -0.9271 0.7138 46 1 15.9171 -2.3430 0.5059 47 1 15.2489 -4.8694 0.3201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732014334.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:51 Heat of formation + Delta-G solvation = 48.220932 kcal Electronic energy + Delta-G solvation = -29194.723922 eV Core-core repulsion = 24962.135064 eV Total energy + Delta-G solvation = -4232.588858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.34576 -43.56438 -40.91559 -38.81977 -36.63053 -35.40203 -34.53488 -34.31851 -33.84514 -33.36948 -31.03184 -29.84970 -27.79173 -27.60366 -25.98000 -24.73058 -24.61511 -23.14037 -22.76226 -22.39751 -21.17713 -21.16040 -19.87895 -19.16338 -18.46090 -18.10080 -17.72079 -17.34976 -17.08274 -17.06378 -16.67106 -16.40886 -16.03815 -15.52736 -15.20487 -15.02352 -14.91291 -14.78353 -14.11077 -14.04532 -13.90579 -13.73327 -13.56397 -13.50093 -13.37802 -13.00035 -12.90439 -12.72315 -12.59783 -12.40119 -12.19349 -12.02942 -11.82225 -11.74187 -11.71528 -11.65337 -11.39960 -11.20384 -10.89972 -10.55936 -10.36942 -9.26379 -8.75959 -8.15104 -5.48623 -0.54697 0.01715 0.88721 1.11553 1.29757 1.41272 1.50421 1.65099 1.70060 1.86020 2.43812 2.58203 2.61333 3.05569 3.16316 3.33658 3.59307 3.85971 3.91663 3.99142 4.00179 4.09105 4.20373 4.28629 4.34257 4.47628 4.55678 4.59760 4.67901 4.72093 4.74666 4.75869 4.94058 4.95742 4.99506 5.06909 5.09091 5.16288 5.19803 5.21795 5.37566 5.46253 5.57861 5.64052 5.94242 6.00470 6.12797 6.25573 6.65788 6.79856 7.04936 7.71602 8.11125 9.04936 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.001868 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.630581 B =14987.078121 C =15494.651870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 C -0.145 4.145 4 N -0.611 5.611 5 C -0.229 4.229 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.952 5.952 9 Si 0.933 3.067 10 H -0.280 1.280 11 H -0.318 1.318 12 H -0.256 1.256 13 C 0.134 3.866 14 C -0.129 4.129 15 C 0.125 3.875 16 N -0.700 5.700 17 C 0.595 3.405 18 O -0.553 6.553 19 C -0.030 4.030 20 C -0.166 4.166 21 C 0.054 3.946 22 C 0.001 3.999 23 C -0.145 4.145 24 C -0.225 4.225 25 C 0.001 3.999 26 O -0.175 6.175 27 O 0.154 5.846 28 N -0.331 5.331 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.258 0.742 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.415 0.585 44 H 0.195 0.805 45 H 0.174 0.826 46 H 0.184 0.816 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.735 -4.004 -13.985 31.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 C -0.204 4.204 4 N -0.334 5.334 5 C -0.359 4.359 6 H 0.064 0.936 7 C -0.221 4.221 8 N -0.597 5.597 9 Si 0.763 3.237 10 H -0.207 1.207 11 H -0.248 1.248 12 H -0.180 1.180 13 C 0.008 3.992 14 C -0.169 4.169 15 C 0.001 3.999 16 N -0.351 5.351 17 C 0.379 3.621 18 O -0.430 6.430 19 C -0.187 4.187 20 C -0.188 4.188 21 C -0.009 4.009 22 C -0.049 4.049 23 C -0.165 4.165 24 C -0.243 4.243 25 C -0.067 4.067 26 O -0.072 6.072 27 O 0.073 5.927 28 N -0.028 5.028 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.251 0.749 44 H 0.213 0.787 45 H 0.191 0.809 46 H 0.202 0.798 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 26.541 -3.974 -13.812 30.182 hybrid contribution -0.253 -0.973 0.802 1.286 sum 26.288 -4.947 -13.010 29.745 Atomic orbital electron populations 1.22063 0.97254 1.00392 1.00844 1.20709 0.92918 0.92950 0.88332 1.22055 1.00341 0.97304 1.00661 1.44393 1.53098 1.33648 1.02233 1.18511 1.39739 0.91604 0.86071 0.93562 1.25938 0.99885 1.01304 0.94924 1.69993 1.53592 1.36591 0.99523 0.86037 0.77336 0.82710 0.77571 1.20749 1.24767 1.18040 1.21176 0.89073 0.89466 0.99489 1.22175 0.95576 0.96636 1.02526 1.21431 0.78491 0.97637 1.02295 1.45905 1.06276 1.10872 1.72076 1.17042 0.82811 0.85426 0.76782 1.90788 1.83545 1.17342 1.51288 1.23182 0.96790 0.90184 1.08496 1.22822 0.87895 1.02809 1.05294 1.20640 0.91703 0.84203 1.04351 1.18003 0.87894 0.84158 1.14885 1.22406 0.91210 1.01598 1.01282 1.22226 1.00706 0.93049 1.08327 1.25317 0.79484 1.01085 1.00855 1.84071 1.22941 1.28987 1.71174 1.84902 1.13912 1.28571 1.65313 1.74178 0.91700 1.20388 1.16549 0.94720 0.90764 0.94664 0.90133 0.93570 0.90936 0.95207 0.93293 0.91017 0.95277 0.93082 0.89868 0.89854 0.92877 0.74853 0.78737 0.80861 0.79830 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.04 71.98 0.65 -4.49 16 2 C 0.16 5.54 3.36 44.99 0.15 5.69 16 3 C -0.14 -4.77 9.11 71.98 0.66 -4.11 16 4 N -0.61 -26.72 2.06 -678.05 -1.40 -28.12 16 5 C -0.23 -12.41 8.74 84.03 0.73 -11.68 16 6 H 0.05 2.80 7.17 -2.91 -0.02 2.78 16 7 C -0.03 -1.45 5.31 84.86 0.45 -1.00 16 8 N -0.95 -59.61 13.97 21.65 0.30 -59.31 16 9 Si 0.93 46.56 24.97 68.60 1.71 48.28 16 10 H -0.28 -13.51 6.66 99.48 0.66 -12.84 16 11 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16 12 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.13 5.26 4.49 86.38 0.39 5.65 16 14 C -0.13 -4.36 5.65 30.59 0.17 -4.18 16 15 C 0.13 3.90 5.67 86.38 0.49 4.39 16 16 N -0.70 -20.24 5.55 -465.50 -2.59 -22.83 16 17 C 0.60 18.32 7.85 86.93 0.68 19.00 16 18 O -0.55 -20.03 16.94 -3.68 -0.06 -20.09 16 19 C -0.03 -0.79 7.17 42.80 0.31 -0.48 16 20 C -0.17 -3.71 10.96 22.87 0.25 -3.46 16 21 C 0.05 1.06 7.30 24.32 0.18 1.24 16 22 C 0.00 0.01 7.17 24.13 0.17 0.18 16 23 C -0.15 -1.68 10.86 22.43 0.24 -1.43 16 24 C -0.22 -1.60 10.88 22.10 0.24 -1.36 16 25 C 0.00 0.00 12.08 67.05 0.81 0.81 16 26 O -0.18 -2.52 10.67 -6.64 -0.07 -2.59 16 27 O 0.15 3.21 11.21 66.42 0.74 3.95 16 28 N -0.33 -8.15 11.81 -48.87 -0.58 -8.72 16 29 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 2.42 7.78 -2.39 -0.02 2.40 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.03 1.12 7.25 -2.38 -0.02 1.10 16 36 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 37 H 0.07 2.41 7.90 -2.39 -0.02 2.39 16 38 H 0.03 1.32 2.98 -2.39 -0.01 1.31 16 39 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.41 10.76 8.23 -92.71 -0.76 10.00 16 44 H 0.20 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 47 H 0.25 -0.65 8.06 -2.91 -0.02 -0.67 16 Total: -1.00 -73.21 398.50 4.84 -68.37 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.19 Total: 16.29 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.58 Total: 4.77 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -4.26 Total: -118.97 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.61 Total: -18.73 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.71 Total: 48.28 kcal Total: -73.21 4.84 -68.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732014334.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.591 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds