Wall clock time and date at job start Wed Apr 1 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 N 1.46494 * 109.47173 * 119.99967 * 2 1 3 5 5 C 1.36936 * 120.00285 * 294.90376 * 4 2 1 6 6 H 1.08004 * 119.99683 * 37.14709 * 5 4 2 7 7 C 1.38816 * 120.00132 * 217.14820 * 5 4 2 8 8 N 1.31621 * 119.99681 * 21.26412 * 7 5 4 9 9 Si 1.86792 * 119.99917 * 201.26379 * 7 5 4 10 10 H 1.48498 * 109.47312 * 60.00133 * 9 7 5 11 11 H 1.48508 * 109.47132 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47249 * 299.99826 * 9 7 5 13 13 C 1.46500 * 119.99811 * 114.90152 * 4 2 1 14 14 C 1.52992 * 109.47423 * 269.99893 * 13 4 2 15 15 C 1.52999 * 109.47291 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47578 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00405 * 180.02562 * 16 15 14 18 18 O 1.21686 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.46842 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.42396 * 128.41398 * 0.02562 * 19 17 16 21 21 N 1.29893 * 106.48177 * 179.74045 * 20 19 17 22 22 O 1.20729 * 112.91939 * 0.26084 * 21 20 19 23 23 C 1.34453 * 111.90736 * 359.97438 * 22 21 20 24 24 C 1.46429 * 127.24118 * 180.02562 * 23 22 21 25 25 C 1.36668 * 125.99476 * 0.02562 * 24 23 22 26 26 C 1.40443 * 106.70426 * 180.02562 * 25 24 23 27 27 C 1.35078 * 107.11825 * 0.02562 * 26 25 24 28 28 O 1.34088 * 108.78265 * 359.73146 * 27 26 25 29 29 H 1.09000 * 109.47346 * 303.30751 * 1 2 3 30 30 H 1.09000 * 109.47629 * 63.31297 * 1 2 3 31 31 H 1.09003 * 109.46815 * 183.31352 * 1 2 3 32 32 H 1.08997 * 109.46709 * 240.00291 * 2 1 3 33 33 H 1.09004 * 109.47320 * 181.62160 * 3 2 1 34 34 H 1.09002 * 109.47485 * 301.62462 * 3 2 1 35 35 H 1.09004 * 109.47370 * 61.61782 * 3 2 1 36 36 H 0.97004 * 119.99629 * 179.97438 * 8 7 5 37 37 H 1.09010 * 109.47172 * 149.99692 * 13 4 2 38 38 H 1.09003 * 109.47011 * 30.00366 * 13 4 2 39 39 H 1.09006 * 109.47282 * 60.00240 * 14 13 4 40 40 H 1.08999 * 109.47587 * 299.99755 * 14 13 4 41 41 H 1.09004 * 109.47201 * 60.00369 * 15 14 13 42 42 H 1.08994 * 109.47511 * 300.00720 * 15 14 13 43 43 H 0.97003 * 119.99745 * 0.02562 * 16 15 14 44 44 H 1.08002 * 126.75665 * 359.97438 * 20 19 17 45 45 H 1.08004 * 126.65021 * 0.02740 * 25 24 23 46 46 H 1.07995 * 126.43879 * 180.02562 * 26 25 24 47 47 H 1.07996 * 125.60886 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7758 -0.1651 2.4372 6 1 0.8339 0.3218 2.6427 7 6 2.7405 -0.2582 3.4310 8 7 4.0015 -0.4529 3.1079 9 14 2.2490 -0.1070 5.2267 10 1 1.2793 -1.1791 5.5665 11 1 3.4549 -0.2413 6.0830 12 1 1.6221 1.2191 5.4584 13 6 2.7662 -1.9434 1.0646 14 6 1.7931 -3.1237 1.0928 15 6 2.5740 -4.4321 0.9548 16 7 1.6422 -5.5622 0.9812 17 6 2.1080 -6.8224 0.8747 18 8 3.3026 -7.0215 0.7562 19 6 1.1739 -7.9551 0.9006 20 6 -0.2440 -7.9298 1.0289 21 7 -0.6392 -9.1667 0.9956 22 8 0.2729 -9.9485 0.8757 23 6 1.4623 -9.3253 0.8076 24 6 2.7806 -9.9455 0.6612 25 6 3.0318 -11.2856 0.5666 26 6 4.4233 -11.4275 0.4406 27 6 4.9535 -10.1854 0.4640 28 8 3.9597 -9.2942 0.5916 29 1 -0.3634 0.5643 0.8588 30 1 -0.3634 0.4615 -0.9182 31 1 -0.3633 -1.0260 0.0594 32 1 1.8933 -0.5138 -0.8900 33 1 3.1296 1.4427 -0.0291 34 1 1.6530 1.9647 -0.8751 35 1 1.7005 1.9479 0.9041 36 1 4.6756 -0.5176 3.8023 37 1 3.4714 -2.0341 1.8908 38 1 3.3108 -1.9440 0.1204 39 1 1.0879 -3.0330 0.2665 40 1 1.2485 -3.1231 2.0370 41 1 3.2795 -4.5230 1.7807 42 1 3.1184 -4.4324 0.0105 43 1 0.6899 -5.4035 1.0753 44 1 -0.8683 -7.0542 1.1298 45 1 2.3017 -12.0812 0.5851 46 1 4.9672 -12.3554 0.3433 47 1 6.0044 -9.9487 0.3882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753288091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:56 Heat of formation + Delta-G solvation = 62.302210 kcal Electronic energy + Delta-G solvation = -29987.802371 eV Core-core repulsion = 25755.824123 eV Total energy + Delta-G solvation = -4231.978248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.28616 -42.75163 -39.43903 -36.80278 -35.04453 -34.37175 -33.58326 -32.77975 -32.49753 -31.49790 -29.29325 -28.69737 -26.21078 -25.92862 -24.61374 -23.76434 -22.91128 -21.80101 -21.27465 -20.94477 -20.22065 -19.52884 -18.95423 -18.13097 -17.51385 -16.43349 -16.30097 -16.14750 -15.61638 -15.39893 -15.14825 -14.91705 -14.44719 -14.12822 -14.00441 -13.52677 -13.35409 -13.15609 -13.07332 -12.86886 -12.70061 -12.41992 -11.99237 -11.75685 -11.50457 -11.44985 -11.31009 -10.99633 -10.94042 -10.76157 -10.69395 -10.64086 -10.45719 -10.24047 -10.14525 -10.02270 -9.89544 -9.59515 -9.51858 -8.92394 -8.47170 -8.44311 -6.55794 -5.77898 -3.35543 0.09338 1.50119 1.71983 1.78421 2.34980 3.04489 3.22351 3.35512 3.42455 3.43678 3.49179 3.86278 3.96253 4.30797 4.47094 4.60767 4.61941 4.86637 4.95857 5.21320 5.35578 5.39165 5.45634 5.48919 5.64059 5.64444 5.78286 5.93595 6.01532 6.06994 6.16487 6.29580 6.37539 6.38885 6.43736 6.65906 6.71733 6.72329 6.77252 6.78235 6.79190 7.10467 7.20667 7.33521 7.53513 7.68193 7.71999 7.83966 8.22682 8.53465 9.20515 9.83384 10.41897 11.21990 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002309 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.302784 B =12122.929918 C =12504.176411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.145 4.145 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.151 3.849 14 C -0.146 4.146 15 C 0.123 3.877 16 N -0.715 5.715 17 C 0.583 3.417 18 O -0.516 6.516 19 C -0.233 4.233 20 C 0.033 3.967 21 N -0.355 5.355 22 O 0.121 5.879 23 C 0.109 3.891 24 C 0.022 3.978 25 C -0.149 4.149 26 C -0.229 4.229 27 C -0.001 4.001 28 O -0.109 6.109 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.255 0.745 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.398 0.602 44 H 0.205 0.795 45 H 0.159 0.841 46 H 0.156 0.844 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 -19.175 -6.865 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.024 3.976 14 C -0.187 4.187 15 C 0.000 4.000 16 N -0.366 5.366 17 C 0.368 3.632 18 O -0.392 6.392 19 C -0.241 4.241 20 C -0.146 4.146 21 N -0.059 5.059 22 O 0.057 5.943 23 C 0.043 3.957 24 C -0.029 4.029 25 C -0.169 4.169 26 C -0.248 4.248 27 C -0.072 4.072 28 O -0.002 6.002 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.232 0.768 44 H 0.221 0.779 45 H 0.176 0.824 46 H 0.174 0.826 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.309 -19.510 -6.764 20.913 hybrid contribution -0.207 0.526 1.071 1.211 sum -3.516 -18.984 -5.693 20.129 Atomic orbital electron populations 1.22207 0.98944 1.00460 0.99717 1.20410 0.91929 0.92326 0.89833 1.22036 1.00832 0.97845 0.99710 1.43848 1.64354 1.20477 1.01220 1.18850 0.97449 1.34656 0.87263 0.92352 1.25150 0.94531 1.00502 0.98634 1.69972 0.99366 1.51511 1.32011 0.86533 0.77441 0.78192 0.85570 1.21033 1.21676 1.20839 1.20810 0.93055 0.82841 1.00929 1.22515 1.00472 0.94103 1.01565 1.21524 0.92152 0.84213 1.02083 1.45955 1.11353 1.05470 1.73833 1.16704 0.86942 0.81816 0.77788 1.90890 1.14859 1.84687 1.48786 1.21700 0.94461 0.93832 1.14062 1.25048 0.93030 0.96085 1.00399 1.73518 1.10453 1.02480 1.19444 1.84930 1.09632 1.32892 1.66804 1.21026 0.86173 0.89404 0.99100 1.18003 0.82939 0.89272 1.12719 1.22025 0.97115 0.94585 1.03191 1.21784 0.94083 0.98867 1.10021 1.24602 0.93628 0.87497 1.01474 1.84531 1.12667 1.34943 1.68014 0.92976 0.94643 0.93798 0.93738 0.93330 0.95223 0.92368 0.93544 0.88516 0.95727 0.93217 0.91609 0.91221 0.91738 0.76843 0.77858 0.82356 0.82622 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.19 37.16 0.34 -2.39 16 2 C 0.16 3.25 3.37 -67.93 -0.23 3.02 16 3 C -0.15 -2.89 9.11 37.15 0.34 -2.55 16 4 N -0.58 -13.36 2.37 -165.67 -0.39 -13.76 16 5 C -0.25 -6.45 8.04 -15.06 -0.12 -6.58 16 6 H 0.06 1.51 7.14 -52.48 -0.37 1.14 16 7 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 8 N -0.89 -24.56 11.43 55.49 0.63 -23.93 16 9 Si 0.89 21.01 29.60 -169.99 -5.03 15.98 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.15 3.27 5.28 -4.05 -0.02 3.24 16 14 C -0.15 -2.56 5.65 -26.74 -0.15 -2.71 16 15 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 16 N -0.72 -9.75 5.55 -61.57 -0.34 -10.09 16 17 C 0.58 8.70 7.79 -12.78 -0.10 8.60 16 18 O -0.52 -9.26 13.91 -18.27 -0.25 -9.51 16 19 C -0.23 -2.96 6.37 -104.03 -0.66 -3.63 16 20 C 0.03 0.34 11.67 -16.77 -0.20 0.15 16 21 N -0.36 -4.08 11.97 30.86 0.37 -3.71 16 22 O 0.12 1.37 11.19 16.12 0.18 1.55 16 23 C 0.11 1.34 7.41 -35.50 -0.26 1.08 16 24 C 0.02 0.27 7.08 -36.85 -0.26 0.01 16 25 C -0.15 -1.38 10.86 -39.32 -0.43 -1.81 16 26 C -0.23 -1.84 10.88 -39.88 -0.43 -2.27 16 27 C 0.00 -0.01 12.08 29.61 0.36 0.35 16 28 O -0.11 -1.46 7.67 -18.81 -0.14 -1.60 16 29 H 0.05 0.98 7.32 -51.93 -0.38 0.60 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.04 0.85 7.77 -51.93 -0.40 0.45 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 1.25 7.50 -51.93 -0.39 0.86 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.10 2.42 5.48 -51.92 -0.28 2.13 16 38 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.40 4.33 7.69 -40.82 -0.31 4.01 16 44 H 0.20 1.39 7.74 -52.49 -0.41 0.98 16 45 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 46 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 47 H 0.21 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -31.31 396.57 -7.69 -39.00 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.75 Total: 3.38 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.94 Total: -3.30 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: 0.27 Total: -51.47 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.22 Total: -9.56 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.31 -7.69 -39.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753288091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.299 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds