Wall clock time and date at job start Wed Apr 1 2020 04:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 N 1.46494 * 109.47173 * 119.99967 * 2 1 3 5 5 C 1.36936 * 120.00285 * 294.90376 * 4 2 1 6 6 H 1.08004 * 119.99683 * 37.14709 * 5 4 2 7 7 C 1.38816 * 120.00132 * 217.14820 * 5 4 2 8 8 N 1.31621 * 119.99681 * 21.26412 * 7 5 4 9 9 Si 1.86792 * 119.99917 * 201.26379 * 7 5 4 10 10 H 1.48498 * 109.47312 * 60.00133 * 9 7 5 11 11 H 1.48508 * 109.47132 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47249 * 299.99826 * 9 7 5 13 13 C 1.46500 * 119.99811 * 114.90152 * 4 2 1 14 14 C 1.52992 * 109.47423 * 269.99893 * 13 4 2 15 15 C 1.52999 * 109.47291 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.47578 * 180.02562 * 15 14 13 17 17 C 1.34772 * 120.00405 * 180.02562 * 16 15 14 18 18 O 1.21686 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.46842 * 120.00009 * 180.02562 * 17 16 15 20 20 C 1.42396 * 128.41398 * 0.02562 * 19 17 16 21 21 N 1.29893 * 106.48177 * 179.74045 * 20 19 17 22 22 O 1.20729 * 112.91939 * 0.26084 * 21 20 19 23 23 C 1.34453 * 111.90736 * 359.97438 * 22 21 20 24 24 C 1.46429 * 127.24118 * 180.02562 * 23 22 21 25 25 C 1.36668 * 125.99476 * 0.02562 * 24 23 22 26 26 C 1.40443 * 106.70426 * 180.02562 * 25 24 23 27 27 C 1.35078 * 107.11825 * 0.02562 * 26 25 24 28 28 O 1.34088 * 108.78265 * 359.73146 * 27 26 25 29 29 H 1.09000 * 109.47346 * 303.30751 * 1 2 3 30 30 H 1.09000 * 109.47629 * 63.31297 * 1 2 3 31 31 H 1.09003 * 109.46815 * 183.31352 * 1 2 3 32 32 H 1.08997 * 109.46709 * 240.00291 * 2 1 3 33 33 H 1.09004 * 109.47320 * 181.62160 * 3 2 1 34 34 H 1.09002 * 109.47485 * 301.62462 * 3 2 1 35 35 H 1.09004 * 109.47370 * 61.61782 * 3 2 1 36 36 H 0.97004 * 119.99629 * 179.97438 * 8 7 5 37 37 H 1.09010 * 109.47172 * 149.99692 * 13 4 2 38 38 H 1.09003 * 109.47011 * 30.00366 * 13 4 2 39 39 H 1.09006 * 109.47282 * 60.00240 * 14 13 4 40 40 H 1.08999 * 109.47587 * 299.99755 * 14 13 4 41 41 H 1.09004 * 109.47201 * 60.00369 * 15 14 13 42 42 H 1.08994 * 109.47511 * 300.00720 * 15 14 13 43 43 H 0.97003 * 119.99745 * 0.02562 * 16 15 14 44 44 H 1.08002 * 126.75665 * 359.97438 * 20 19 17 45 45 H 1.08004 * 126.65021 * 0.02740 * 25 24 23 46 46 H 1.07995 * 126.43879 * 180.02562 * 26 25 24 47 47 H 1.07996 * 125.60886 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7758 -0.1651 2.4372 6 1 0.8339 0.3218 2.6427 7 6 2.7405 -0.2582 3.4310 8 7 4.0015 -0.4529 3.1079 9 14 2.2490 -0.1070 5.2267 10 1 1.2793 -1.1791 5.5665 11 1 3.4549 -0.2413 6.0830 12 1 1.6221 1.2191 5.4584 13 6 2.7662 -1.9434 1.0646 14 6 1.7931 -3.1237 1.0928 15 6 2.5740 -4.4321 0.9548 16 7 1.6422 -5.5622 0.9812 17 6 2.1080 -6.8224 0.8747 18 8 3.3026 -7.0215 0.7562 19 6 1.1739 -7.9551 0.9006 20 6 -0.2440 -7.9298 1.0289 21 7 -0.6392 -9.1667 0.9956 22 8 0.2729 -9.9485 0.8757 23 6 1.4623 -9.3253 0.8076 24 6 2.7806 -9.9455 0.6612 25 6 3.0318 -11.2856 0.5666 26 6 4.4233 -11.4275 0.4406 27 6 4.9535 -10.1854 0.4640 28 8 3.9597 -9.2942 0.5916 29 1 -0.3634 0.5643 0.8588 30 1 -0.3634 0.4615 -0.9182 31 1 -0.3633 -1.0260 0.0594 32 1 1.8933 -0.5138 -0.8900 33 1 3.1296 1.4427 -0.0291 34 1 1.6530 1.9647 -0.8751 35 1 1.7005 1.9479 0.9041 36 1 4.6756 -0.5176 3.8023 37 1 3.4714 -2.0341 1.8908 38 1 3.3108 -1.9440 0.1204 39 1 1.0879 -3.0330 0.2665 40 1 1.2485 -3.1231 2.0370 41 1 3.2795 -4.5230 1.7807 42 1 3.1184 -4.4324 0.0105 43 1 0.6899 -5.4035 1.0753 44 1 -0.8683 -7.0542 1.1298 45 1 2.3017 -12.0812 0.5851 46 1 4.9672 -12.3554 0.3433 47 1 6.0044 -9.9487 0.3882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753288091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:55 Heat of formation + Delta-G solvation = 44.787590 kcal Electronic energy + Delta-G solvation = -29988.561861 eV Core-core repulsion = 25755.824123 eV Total energy + Delta-G solvation = -4232.737739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.13030 -43.51828 -40.62875 -38.49084 -36.37788 -35.27488 -34.39686 -34.25927 -33.56308 -33.08343 -30.63418 -29.81651 -27.71989 -27.42720 -25.98307 -24.77499 -24.17313 -22.57611 -22.41569 -22.13472 -21.33528 -21.22290 -19.81657 -18.98653 -18.50408 -18.17171 -17.13486 -17.01031 -16.96840 -16.83630 -16.50531 -16.09386 -15.85319 -15.61677 -15.20675 -14.89529 -14.66060 -14.48927 -14.03349 -13.82681 -13.72983 -13.44620 -13.31284 -13.25022 -13.13195 -12.87330 -12.78117 -12.67848 -12.50010 -12.36128 -12.13940 -11.89380 -11.79583 -11.68792 -11.57552 -11.29986 -11.27557 -11.13674 -10.86202 -10.43895 -10.15160 -9.24290 -8.46745 -7.74432 -5.35438 -0.78528 0.64400 0.90346 0.99770 1.46800 1.50058 1.54865 1.63442 1.97357 2.14077 2.54637 2.70009 3.04270 3.13720 3.31811 3.42134 3.63820 3.86249 3.97116 4.04115 4.14210 4.20812 4.34366 4.37927 4.54971 4.63833 4.66658 4.74010 4.76012 4.83403 4.89365 4.95505 4.98362 4.99782 5.12647 5.17785 5.22556 5.25054 5.39342 5.45931 5.52269 5.65043 5.70339 5.77717 5.93135 6.04581 6.44995 6.55670 6.86065 7.11695 7.26259 7.97351 8.49030 9.20631 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002309 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.302784 B =12122.929918 C =12504.176411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.244 4.244 6 H 0.055 0.945 7 C -0.037 4.037 8 N -0.917 5.917 9 Si 0.945 3.055 10 H -0.280 1.280 11 H -0.299 1.299 12 H -0.278 1.278 13 C 0.150 3.850 14 C -0.122 4.122 15 C 0.138 3.862 16 N -0.704 5.704 17 C 0.583 3.417 18 O -0.552 6.552 19 C -0.261 4.261 20 C 0.053 3.947 21 N -0.370 5.370 22 O 0.120 5.880 23 C 0.116 3.884 24 C -0.023 4.023 25 C -0.132 4.132 26 C -0.224 4.224 27 C -0.007 4.007 28 O -0.146 6.146 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.247 0.753 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.063 0.937 43 H 0.413 0.587 44 H 0.238 0.762 45 H 0.183 0.817 46 H 0.189 0.811 47 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 -20.544 -7.851 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.196 4.196 4 N -0.314 5.314 5 C -0.374 4.374 6 H 0.073 0.927 7 C -0.234 4.234 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.204 1.204 13 C 0.023 3.977 14 C -0.162 4.162 15 C 0.013 3.987 16 N -0.356 5.356 17 C 0.370 3.630 18 O -0.431 6.431 19 C -0.269 4.269 20 C -0.127 4.127 21 N -0.075 5.075 22 O 0.060 5.940 23 C 0.050 3.950 24 C -0.074 4.074 25 C -0.152 4.152 26 C -0.243 4.243 27 C -0.077 4.077 28 O -0.040 6.040 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.250 0.750 44 H 0.254 0.746 45 H 0.200 0.800 46 H 0.206 0.794 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.002 -20.901 -7.764 22.851 hybrid contribution 0.381 0.890 1.282 1.607 sum -4.621 -20.011 -6.482 21.536 Atomic orbital electron populations 1.22053 0.96582 1.00915 1.00575 1.20660 0.93649 0.92056 0.89036 1.21958 0.99266 0.98166 1.00254 1.44081 1.64444 1.21338 1.01538 1.18990 0.96831 1.33228 0.88384 0.92727 1.25725 0.94558 1.01498 1.01607 1.70109 1.00080 1.53629 1.32344 0.85693 0.76668 0.78206 0.81990 1.20586 1.22569 1.20436 1.20708 0.93430 0.84091 0.99506 1.22141 0.99479 0.92958 1.01656 1.21168 0.91950 0.84439 1.01101 1.45710 1.11815 1.04572 1.73537 1.16955 0.86828 0.82383 0.76874 1.90870 1.16527 1.85232 1.50472 1.21497 0.95249 0.93283 1.16825 1.25488 0.92134 0.96694 0.98346 1.73499 1.10549 1.02890 1.20593 1.84931 1.09268 1.32772 1.67071 1.21281 0.86695 0.89590 0.97464 1.18320 0.82786 0.90403 1.15873 1.22469 0.98348 0.93971 1.00419 1.22204 0.93595 0.99676 1.08806 1.25397 0.94337 0.87726 1.00260 1.84500 1.13703 1.36788 1.69026 0.94506 0.91631 0.93255 0.92428 0.95722 0.91664 0.94537 0.94338 0.92033 0.95556 0.91191 0.92792 0.93513 0.91860 0.74997 0.74585 0.79982 0.79369 0.74481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.19 71.98 0.66 -3.98 16 2 C 0.15 5.86 3.37 44.99 0.15 6.01 16 3 C -0.14 -5.33 9.11 71.98 0.66 -4.67 16 4 N -0.59 -27.25 2.37 -678.05 -1.61 -28.86 16 5 C -0.24 -12.50 8.04 84.03 0.68 -11.83 16 6 H 0.06 2.82 7.14 -2.91 -0.02 2.80 16 7 C -0.04 -1.98 4.96 84.86 0.42 -1.56 16 8 N -0.92 -52.44 11.43 21.65 0.25 -52.19 16 9 Si 0.95 43.82 29.60 68.60 2.03 45.85 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.15 6.54 5.28 86.38 0.46 6.99 16 14 C -0.12 -4.20 5.65 30.59 0.17 -4.02 16 15 C 0.14 4.41 5.67 86.38 0.49 4.90 16 16 N -0.70 -18.74 5.55 -466.93 -2.59 -21.33 16 17 C 0.58 17.50 7.79 86.50 0.67 18.17 16 18 O -0.55 -20.45 13.91 18.14 0.25 -20.20 16 19 C -0.26 -6.53 6.37 -19.48 -0.12 -6.66 16 20 C 0.05 1.00 11.67 86.01 1.00 2.01 16 21 N -0.37 -7.98 11.97 -56.71 -0.68 -8.66 16 22 O 0.12 2.62 11.19 67.90 0.76 3.38 16 23 C 0.12 2.83 7.41 24.91 0.18 3.01 16 24 C -0.02 -0.56 7.08 24.04 0.17 -0.39 16 25 C -0.13 -2.25 10.86 22.44 0.24 -2.00 16 26 C -0.22 -3.11 10.88 22.08 0.24 -2.87 16 27 C -0.01 -0.12 12.08 67.09 0.81 0.69 16 28 O -0.15 -3.96 7.67 16.22 0.12 -3.84 16 29 H 0.04 1.30 7.32 -2.39 -0.02 1.28 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.07 7.77 -2.39 -0.02 2.05 16 33 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.04 1.54 7.50 -2.39 -0.02 1.52 16 36 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 37 H 0.06 3.19 5.48 -2.38 -0.01 3.18 16 38 H 0.03 1.11 7.88 -2.39 -0.02 1.09 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.41 8.25 7.69 -92.71 -0.71 7.54 16 44 H 0.24 2.53 7.74 -2.91 -0.02 2.51 16 45 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.25 396.57 5.71 -64.54 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.28 Total: 17.50 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.89 Total: 3.79 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.63 Total: -111.04 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 1.14 Total: -20.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.25 5.71 -64.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753288091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.331 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds