Wall clock time and date at job start Wed Apr 1 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47081 * 2 1 4 4 O 1.21291 * 120.00136 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99771 * 180.02562 * 3 2 1 6 6 C 1.40032 * 119.99857 * 184.68815 * 5 3 2 7 7 C 1.38898 * 119.99031 * 324.26450 * 6 5 3 8 8 C 1.38021 * 120.00363 * 180.28034 * 7 6 5 9 9 C 1.38948 * 119.99193 * 359.47008 * 8 7 6 10 10 N 1.39830 * 120.00373 * 180.25521 * 9 8 7 11 11 C 1.34772 * 119.99852 * 145.13197 * 10 9 8 12 12 O 1.21387 * 120.00149 * 353.97478 * 11 10 9 13 13 C 1.49334 * 119.99829 * 173.96521 * 11 10 9 14 14 O 1.21368 * 120.00014 * 2.19260 * 13 11 10 15 15 N 1.34779 * 120.00080 * 182.19041 * 13 11 10 16 16 C 1.46497 * 119.99875 * 181.68099 * 15 13 11 17 17 C 1.53005 * 109.46974 * 94.44745 * 16 15 13 18 18 C 1.46495 * 119.99726 * 1.67963 * 15 13 11 19 19 C 1.50704 * 109.47189 * 81.93362 * 18 15 13 20 20 H 1.07998 * 119.99886 * 359.97438 * 19 18 15 21 21 C 1.37882 * 120.00066 * 179.97438 * 19 18 15 22 22 N 1.31509 * 119.99796 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00021 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47227 * 89.99878 * 23 21 19 25 25 H 1.48492 * 109.46912 * 210.00202 * 23 21 19 26 26 H 1.48506 * 109.46790 * 329.99849 * 23 21 19 27 27 C 1.38941 * 119.98735 * 0.55454 * 9 8 7 28 28 C 1.38008 * 119.99840 * 359.70012 * 27 9 8 29 29 H 1.09005 * 109.46773 * 60.00419 * 1 2 3 30 30 H 1.08993 * 109.46853 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00467 * 1 2 3 32 32 H 1.08997 * 109.47702 * 239.99652 * 2 1 3 33 33 H 1.09005 * 109.46773 * 119.99581 * 2 1 3 34 34 H 0.97001 * 120.00568 * 4.67677 * 5 3 2 35 35 H 1.08001 * 120.00092 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.99925 * 179.70644 * 8 7 6 37 37 H 0.97004 * 119.99958 * 325.13802 * 10 9 8 38 38 H 1.09004 * 109.47153 * 214.44328 * 16 15 13 39 39 H 1.09001 * 109.47655 * 334.44198 * 16 15 13 40 40 H 1.08995 * 109.47015 * 299.99545 * 17 16 15 41 41 H 1.08992 * 109.47494 * 59.99893 * 17 16 15 42 42 H 1.09001 * 109.46936 * 179.97438 * 17 16 15 43 43 H 1.09002 * 109.47187 * 201.92588 * 18 15 13 44 44 H 1.08995 * 109.47536 * 321.92999 * 18 15 13 45 45 H 0.97000 * 120.00142 * 180.02562 * 22 21 19 46 46 H 1.08005 * 119.99990 * 179.67942 * 27 9 8 47 47 H 1.07999 * 120.00151 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8250 2.9833 0.0986 7 6 3.1257 4.0163 -0.5122 8 6 3.5894 5.3130 -0.4195 9 6 4.7499 5.5863 0.2941 10 7 5.2171 6.9006 0.3925 11 6 5.8198 7.3185 1.5232 12 8 5.8602 6.5910 2.4941 13 6 6.4381 8.6766 1.5816 14 8 6.3632 9.4191 0.6244 15 7 7.0793 9.0778 2.6971 16 6 7.6539 10.4235 2.7678 17 6 6.6512 11.3721 3.4281 18 6 7.2016 8.1681 3.8389 19 6 8.3553 7.2261 3.6093 20 1 8.9388 7.2976 2.7034 21 6 8.6659 6.2729 4.5560 22 7 9.6724 5.4506 4.3554 23 14 7.6571 6.1497 6.1233 24 1 6.5253 5.2121 5.9111 25 1 8.5155 5.6479 7.2262 26 1 7.1286 7.4913 6.4785 27 6 5.4495 4.5526 0.9045 28 6 4.9883 3.2555 0.8071 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9873 0.9326 -0.0694 35 1 2.2212 3.8044 -1.0631 36 1 3.0482 6.1156 -0.8985 37 1 5.1072 7.5115 -0.3529 38 1 8.5707 10.3966 3.3568 39 1 7.8790 10.7759 1.7612 40 1 5.7345 11.3990 2.8392 41 1 6.4263 11.0198 4.4347 42 1 7.0790 12.3733 3.4811 43 1 7.3791 8.7456 4.7461 44 1 6.2807 7.5951 3.9472 45 1 9.8907 4.7798 5.0212 46 1 6.3544 4.7642 1.4548 47 1 5.5318 2.4521 1.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123909894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:09 Heat of formation + Delta-G solvation = -58.143380 kcal Electronic energy + Delta-G solvation = -30400.239418 eV Core-core repulsion = 26163.038257 eV Total energy + Delta-G solvation = -4237.201161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81895 -40.31673 -38.89403 -37.63120 -35.95127 -35.11297 -33.64604 -32.96192 -32.61841 -30.86088 -30.68462 -28.76836 -27.69585 -25.45546 -24.41410 -23.17200 -22.71950 -22.28805 -21.12820 -20.38235 -19.26631 -17.82811 -17.55585 -17.25683 -17.03091 -16.83245 -16.04289 -15.96506 -15.36465 -14.96917 -14.69783 -14.49370 -14.18123 -14.01902 -13.86607 -13.67414 -13.47787 -13.21440 -12.97007 -12.87658 -12.73614 -12.55582 -12.40095 -12.16079 -12.08579 -11.94752 -11.77168 -11.51558 -11.20107 -11.03010 -10.83210 -10.76281 -10.65964 -10.38519 -10.18607 -10.04441 -9.54695 -9.43491 -8.88304 -8.73482 -8.48217 -7.93589 -7.61023 -6.09740 -4.07854 1.19695 1.55200 2.05929 2.42487 2.78575 2.93886 3.30936 3.35645 3.39542 3.71532 4.00120 4.02856 4.37548 4.40806 4.70243 4.73410 4.85250 5.00153 5.13091 5.20150 5.24704 5.43332 5.43620 5.45327 5.54930 5.58387 5.58738 5.62902 5.69871 5.85935 5.91305 6.08046 6.17761 6.20066 6.38063 6.44224 6.45901 6.50255 6.57197 6.61908 6.95696 7.10148 7.21601 7.23580 7.48082 7.55687 7.88993 7.94043 8.23399 8.44019 8.59224 8.90837 9.50997 11.03221 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.002891 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.187949 B = 9681.546178 C =11191.591447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.508 3.492 4 O -0.523 6.523 5 N -0.672 5.672 6 C 0.115 3.885 7 C -0.101 4.101 8 C -0.131 4.131 9 C 0.145 3.855 10 N -0.659 5.659 11 C 0.500 3.500 12 O -0.449 6.449 13 C 0.511 3.489 14 O -0.556 6.556 15 N -0.553 5.553 16 C 0.108 3.892 17 C -0.165 4.165 18 C 0.189 3.811 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.081 3.919 22 N -0.897 5.897 23 Si 0.874 3.126 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.267 1.267 27 C -0.098 4.098 28 C -0.119 4.119 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.410 0.590 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.417 0.583 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.264 0.736 46 H 0.148 0.852 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 -6.580 -9.130 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.296 3.704 4 O -0.398 6.398 5 N -0.318 5.318 6 C 0.022 3.978 7 C -0.122 4.122 8 C -0.152 4.152 9 C 0.050 3.950 10 N -0.308 5.308 11 C 0.282 3.718 12 O -0.318 6.318 13 C 0.294 3.706 14 O -0.437 6.437 15 N -0.283 5.283 16 C -0.015 4.015 17 C -0.223 4.223 18 C 0.068 3.932 19 C -0.559 4.559 20 H 0.090 0.910 21 C -0.122 4.122 22 N -0.536 5.536 23 Si 0.702 3.298 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.192 1.192 27 C -0.118 4.118 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.245 0.755 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.254 0.746 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.166 0.834 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.444 -6.200 -8.721 17.182 hybrid contribution 0.081 -0.357 0.620 0.720 sum -13.362 -6.557 -8.101 16.946 Atomic orbital electron populations 1.21541 0.92771 1.01729 1.03534 1.21643 0.98893 0.93144 1.04611 1.20978 0.81697 0.92255 0.75461 1.90712 1.55103 1.46292 1.47688 1.43525 1.07754 1.07333 1.73143 1.17713 0.96239 0.84218 0.99671 1.20925 1.00414 0.91245 0.99605 1.20787 0.94548 0.97131 1.02716 1.17748 0.93617 0.83837 0.99804 1.43222 1.58513 1.11232 1.17788 1.20342 0.79625 0.88754 0.83091 1.90839 1.52736 1.54987 1.33190 1.19688 0.80559 0.86827 0.83562 1.90662 1.61437 1.55680 1.35903 1.47947 1.50388 1.14655 1.15347 1.21481 0.96496 0.81257 1.02229 1.22124 0.99950 0.99023 1.01181 1.20503 1.00511 0.88994 0.83153 1.21133 1.12840 1.15242 1.06694 0.91007 1.24725 0.94622 0.94835 0.98012 1.69891 1.28362 1.19789 1.35559 0.86878 0.80640 0.79132 0.83197 1.19698 1.21382 1.19188 1.21164 1.00504 0.90585 0.99595 1.20792 0.96847 0.97189 0.99148 0.91899 0.91942 0.91828 0.88686 0.88581 0.75469 0.84385 0.85390 0.74628 0.89744 0.90058 0.92686 0.92390 0.91769 0.95244 0.91357 0.92643 0.83422 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.62 16 2 C -0.14 -0.90 6.42 -27.88 -0.18 -1.08 16 3 C 0.51 5.35 7.67 -10.98 -0.08 5.26 16 4 O -0.52 -7.56 13.45 5.55 0.07 -7.48 16 5 N -0.67 -6.67 5.34 -9.82 -0.05 -6.73 16 6 C 0.12 1.53 6.29 -83.62 -0.53 1.01 16 7 C -0.10 -1.41 8.69 -39.42 -0.34 -1.75 16 8 C -0.13 -1.81 9.96 -39.40 -0.39 -2.21 16 9 C 0.14 2.33 6.24 -83.69 -0.52 1.81 16 10 N -0.66 -10.89 5.32 -10.27 -0.05 -10.94 16 11 C 0.50 10.03 7.45 -11.64 -0.09 9.94 16 12 O -0.45 -10.24 10.21 5.46 0.06 -10.19 16 13 C 0.51 10.48 7.66 -11.64 -0.09 10.40 16 14 O -0.56 -11.34 15.99 5.48 0.09 -11.25 16 15 N -0.55 -11.46 2.48 -175.61 -0.44 -11.89 16 16 C 0.11 1.85 6.15 -4.04 -0.02 1.83 16 17 C -0.16 -2.35 10.24 37.16 0.38 -1.97 16 18 C 0.19 4.40 3.87 -5.19 -0.02 4.38 16 19 C -0.52 -14.22 8.83 -34.44 -0.30 -14.52 16 20 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 21 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 22 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 23 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 27 C -0.10 -1.68 8.64 -39.41 -0.34 -2.02 16 28 C -0.12 -1.71 9.96 -39.42 -0.39 -2.10 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.41 2.63 8.82 -40.82 -0.36 2.27 16 35 H 0.14 1.90 6.26 -52.49 -0.33 1.57 16 36 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.42 5.90 8.30 -40.82 -0.34 5.56 16 38 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 39 H 0.08 1.37 7.27 -51.93 -0.38 0.99 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.67 7.07 -51.93 -0.37 0.30 16 44 H 0.07 1.66 4.84 -51.93 -0.25 1.41 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.15 2.98 6.57 -52.48 -0.34 2.64 16 47 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -34.46 392.47 -7.59 -42.05 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.60 Total: 9.35 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -2.68 Total: 10.53 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.23 Total: -55.55 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: 0.22 Total: -28.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.46 -7.59 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123909894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.097 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds