Wall clock time and date at job start Wed Apr 1 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47081 * 2 1 4 4 O 1.21291 * 120.00136 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99771 * 180.02562 * 3 2 1 6 6 C 1.40032 * 119.99857 * 184.68815 * 5 3 2 7 7 C 1.38898 * 119.99031 * 324.26450 * 6 5 3 8 8 C 1.38021 * 120.00363 * 180.28034 * 7 6 5 9 9 C 1.38948 * 119.99193 * 359.47008 * 8 7 6 10 10 N 1.39830 * 120.00373 * 180.25521 * 9 8 7 11 11 C 1.34772 * 119.99852 * 145.13197 * 10 9 8 12 12 O 1.21387 * 120.00149 * 353.97478 * 11 10 9 13 13 C 1.49334 * 119.99829 * 173.96521 * 11 10 9 14 14 O 1.21368 * 120.00014 * 2.19260 * 13 11 10 15 15 N 1.34779 * 120.00080 * 182.19041 * 13 11 10 16 16 C 1.46497 * 119.99875 * 181.68099 * 15 13 11 17 17 C 1.53005 * 109.46974 * 94.44745 * 16 15 13 18 18 C 1.46495 * 119.99726 * 1.67963 * 15 13 11 19 19 C 1.50704 * 109.47189 * 81.93362 * 18 15 13 20 20 H 1.07998 * 119.99886 * 359.97438 * 19 18 15 21 21 C 1.37882 * 120.00066 * 179.97438 * 19 18 15 22 22 N 1.31509 * 119.99796 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00021 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47227 * 89.99878 * 23 21 19 25 25 H 1.48492 * 109.46912 * 210.00202 * 23 21 19 26 26 H 1.48506 * 109.46790 * 329.99849 * 23 21 19 27 27 C 1.38941 * 119.98735 * 0.55454 * 9 8 7 28 28 C 1.38008 * 119.99840 * 359.70012 * 27 9 8 29 29 H 1.09005 * 109.46773 * 60.00419 * 1 2 3 30 30 H 1.08993 * 109.46853 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47226 * 300.00467 * 1 2 3 32 32 H 1.08997 * 109.47702 * 239.99652 * 2 1 3 33 33 H 1.09005 * 109.46773 * 119.99581 * 2 1 3 34 34 H 0.97001 * 120.00568 * 4.67677 * 5 3 2 35 35 H 1.08001 * 120.00092 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.99925 * 179.70644 * 8 7 6 37 37 H 0.97004 * 119.99958 * 325.13802 * 10 9 8 38 38 H 1.09004 * 109.47153 * 214.44328 * 16 15 13 39 39 H 1.09001 * 109.47655 * 334.44198 * 16 15 13 40 40 H 1.08995 * 109.47015 * 299.99545 * 17 16 15 41 41 H 1.08992 * 109.47494 * 59.99893 * 17 16 15 42 42 H 1.09001 * 109.46936 * 179.97438 * 17 16 15 43 43 H 1.09002 * 109.47187 * 201.92588 * 18 15 13 44 44 H 1.08995 * 109.47536 * 321.92999 * 18 15 13 45 45 H 0.97000 * 120.00142 * 180.02562 * 22 21 19 46 46 H 1.08005 * 119.99990 * 179.67942 * 27 9 8 47 47 H 1.07999 * 120.00151 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8250 2.9833 0.0986 7 6 3.1257 4.0163 -0.5122 8 6 3.5894 5.3130 -0.4195 9 6 4.7499 5.5863 0.2941 10 7 5.2171 6.9006 0.3925 11 6 5.8198 7.3185 1.5232 12 8 5.8602 6.5910 2.4941 13 6 6.4381 8.6766 1.5816 14 8 6.3632 9.4191 0.6244 15 7 7.0793 9.0778 2.6971 16 6 7.6539 10.4235 2.7678 17 6 6.6512 11.3721 3.4281 18 6 7.2016 8.1681 3.8389 19 6 8.3553 7.2261 3.6093 20 1 8.9388 7.2976 2.7034 21 6 8.6659 6.2729 4.5560 22 7 9.6724 5.4506 4.3554 23 14 7.6571 6.1497 6.1233 24 1 6.5253 5.2121 5.9111 25 1 8.5155 5.6479 7.2262 26 1 7.1286 7.4913 6.4785 27 6 5.4495 4.5526 0.9045 28 6 4.9883 3.2555 0.8071 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9873 0.9326 -0.0694 35 1 2.2212 3.8044 -1.0631 36 1 3.0482 6.1156 -0.8985 37 1 5.1072 7.5115 -0.3529 38 1 8.5707 10.3966 3.3568 39 1 7.8790 10.7759 1.7612 40 1 5.7345 11.3990 2.8392 41 1 6.4263 11.0198 4.4347 42 1 7.0790 12.3733 3.4811 43 1 7.3791 8.7456 4.7461 44 1 6.2807 7.5951 3.9472 45 1 9.8907 4.7798 5.0212 46 1 6.3544 4.7642 1.4548 47 1 5.5318 2.4521 1.2819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123909894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:08 Heat of formation + Delta-G solvation = -82.183635 kcal Electronic energy + Delta-G solvation = -30401.281882 eV Core-core repulsion = 26163.038257 eV Total energy + Delta-G solvation = -4238.243624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17117 -41.46638 -40.23095 -39.00863 -37.51216 -36.36519 -34.80110 -34.67449 -33.64484 -32.23500 -32.00104 -30.00383 -29.52866 -26.66788 -25.40979 -24.63353 -24.30000 -23.55085 -22.35078 -21.36402 -20.71269 -19.20631 -18.93268 -18.78232 -18.42956 -18.09829 -17.56673 -17.00834 -16.72544 -16.58514 -15.98188 -15.89237 -15.53344 -15.35670 -15.06020 -14.83785 -14.74096 -14.59336 -14.41579 -14.17860 -14.07732 -13.86559 -13.66232 -13.54686 -13.23440 -13.12023 -12.73015 -12.64597 -12.62166 -12.34464 -12.20372 -12.08363 -12.01874 -11.98009 -11.88447 -11.66313 -10.98565 -10.79547 -10.63511 -10.27057 -9.97142 -9.63153 -8.80425 -8.27130 -6.29128 -0.05825 0.35405 0.57209 1.31423 1.38233 1.41510 1.46521 1.57412 2.06849 2.19235 2.36348 2.53227 2.77326 3.10199 3.32654 3.68266 3.89863 3.95214 4.12770 4.19418 4.27885 4.28793 4.31673 4.41034 4.46064 4.47758 4.66618 4.67860 4.78558 4.89498 4.92450 5.00163 5.02734 5.05085 5.07174 5.23159 5.28511 5.29746 5.34906 5.39642 5.45319 5.47466 5.54713 5.97556 6.04777 6.10812 6.36941 6.43522 6.68067 6.74962 7.00774 7.13968 7.33120 8.89524 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012065 B = 0.002891 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.187949 B = 9681.546178 C =11191.591447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.503 3.497 4 O -0.566 6.566 5 N -0.662 5.662 6 C 0.126 3.874 7 C -0.107 4.107 8 C -0.117 4.117 9 C 0.122 3.878 10 N -0.642 5.642 11 C 0.496 3.504 12 O -0.484 6.484 13 C 0.507 3.493 14 O -0.556 6.556 15 N -0.561 5.561 16 C 0.100 3.900 17 C -0.154 4.154 18 C 0.201 3.799 19 C -0.515 4.515 20 H 0.026 0.974 21 C 0.026 3.974 22 N -0.944 5.944 23 Si 0.936 3.064 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.240 1.240 27 C -0.118 4.118 28 C -0.122 4.122 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.428 0.572 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.428 0.572 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.266 0.734 46 H 0.109 0.891 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -7.111 -9.082 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.294 3.706 4 O -0.444 6.444 5 N -0.309 5.309 6 C 0.031 3.969 7 C -0.127 4.127 8 C -0.137 4.137 9 C 0.028 3.972 10 N -0.291 5.291 11 C 0.278 3.722 12 O -0.356 6.356 13 C 0.290 3.710 14 O -0.437 6.437 15 N -0.291 5.291 16 C -0.022 4.022 17 C -0.212 4.212 18 C 0.080 3.920 19 C -0.553 4.553 20 H 0.045 0.955 21 C -0.173 4.173 22 N -0.585 5.585 23 Si 0.760 3.240 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.164 1.164 27 C -0.139 4.139 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.267 0.733 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.267 0.733 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.127 0.873 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.408 -6.725 -8.723 18.940 hybrid contribution 0.682 -0.263 0.429 0.848 sum -14.725 -6.988 -8.295 18.289 Atomic orbital electron populations 1.21563 0.93418 1.02815 1.01934 1.21722 0.98154 0.90243 1.07174 1.21857 0.81139 0.93702 0.73944 1.90696 1.56090 1.47992 1.49610 1.43547 1.08346 1.06526 1.72472 1.17779 0.95216 0.85848 0.98059 1.21112 1.00529 0.91410 0.99683 1.20994 0.93367 0.98050 1.01321 1.17860 0.94853 0.83130 1.01349 1.43056 1.57248 1.11728 1.17039 1.20400 0.79738 0.88437 0.83615 1.90812 1.54486 1.55750 1.34590 1.19830 0.80606 0.87030 0.83556 1.90645 1.61636 1.55749 1.35681 1.48008 1.50690 1.15632 1.14731 1.21755 0.97464 0.80142 1.02810 1.22052 0.98937 0.99729 1.00490 1.20188 0.98455 0.88835 0.84543 1.21242 1.13272 1.16045 1.04749 0.95527 1.25546 0.95664 0.94453 1.01587 1.70031 1.30439 1.20949 1.37050 0.85883 0.78764 0.80247 0.79063 1.20300 1.20731 1.16353 1.20974 0.99945 0.92432 1.00573 1.20872 0.97473 0.96497 0.99388 0.93159 0.89449 0.93851 0.85513 0.86296 0.73252 0.83868 0.82793 0.73316 0.89640 0.89951 0.93132 0.92413 0.88625 0.93717 0.91740 0.92535 0.87326 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.20 71.98 0.66 -1.00 16 2 C -0.13 -1.24 6.42 29.85 0.19 -1.05 16 3 C 0.50 9.56 7.67 87.66 0.67 10.23 16 4 O -0.57 -15.78 13.45 -3.06 -0.04 -15.82 16 5 N -0.66 -11.73 5.34 -303.37 -1.62 -13.35 16 6 C 0.13 3.20 6.29 38.15 0.24 3.44 16 7 C -0.11 -2.84 8.69 22.38 0.19 -2.64 16 8 C -0.12 -3.13 9.96 22.39 0.22 -2.90 16 9 C 0.12 3.99 6.24 38.20 0.24 4.23 16 10 N -0.64 -21.59 5.32 -304.75 -1.62 -23.21 16 11 C 0.50 20.50 7.45 87.23 0.65 21.15 16 12 O -0.48 -23.00 10.21 -3.36 -0.03 -23.04 16 13 C 0.51 21.07 7.66 87.23 0.67 21.74 16 14 O -0.56 -22.59 15.99 -3.30 -0.05 -22.64 16 15 N -0.56 -23.30 2.48 -827.87 -2.05 -25.36 16 16 C 0.10 3.34 6.15 86.38 0.53 3.87 16 17 C -0.15 -4.06 10.24 71.98 0.74 -3.33 16 18 C 0.20 9.41 3.87 85.64 0.33 9.74 16 19 C -0.51 -29.03 8.83 25.60 0.23 -28.80 16 20 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 21 C 0.03 1.47 5.47 84.66 0.46 1.94 16 22 N -0.94 -58.27 13.96 21.45 0.30 -57.97 16 23 Si 0.94 44.10 27.47 68.60 1.88 45.99 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 27 C -0.12 -4.24 8.64 22.38 0.19 -4.04 16 28 C -0.12 -3.50 9.96 22.37 0.22 -3.28 16 29 H 0.05 0.72 8.10 -2.38 -0.02 0.70 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.68 8.10 -2.39 -0.02 0.67 16 32 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.43 4.31 8.82 -92.71 -0.82 3.49 16 35 H 0.14 3.75 6.26 -2.91 -0.02 3.73 16 36 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 37 H 0.43 12.05 8.30 -92.71 -0.77 11.28 16 38 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 39 H 0.08 2.72 7.27 -2.39 -0.02 2.70 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.97 7.07 -2.39 -0.02 1.95 16 44 H 0.07 3.15 4.84 -2.43 -0.01 3.14 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.11 4.77 6.57 -2.91 -0.02 4.75 16 47 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -78.32 392.47 2.58 -75.74 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.62 Total: 30.36 kcal Atomic # 6 Polarization: 22.85 SS G_CDS: 6.44 Total: 29.29 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.00 Total: -119.89 kcal Atomic # 8 Polarization: -61.37 SS G_CDS: -0.13 Total: -61.49 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -78.32 2.58 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123909894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds