Wall clock time and date at job start Wed Apr 1 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.50579 * 2 1 4 4 C 1.53126 * 109.50147 * 120.07927 * 2 1 3 5 5 C 1.53124 * 109.15878 * 177.59192 * 4 2 1 6 6 H 1.08993 * 109.49981 * 182.40384 * 5 4 2 7 7 C 1.52998 * 109.49854 * 62.28635 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 10 10 C 1.38968 * 111.00191 * 174.15909 * 9 8 5 11 11 C 1.39281 * 119.92414 * 64.20671 * 10 9 8 12 12 C 1.36545 * 120.20416 * 180.02562 * 11 10 9 13 13 C 1.39910 * 120.04825 * 359.96007 * 12 11 10 14 14 C 1.47344 * 120.07403 * 179.97438 * 13 12 11 15 15 O 1.21528 * 119.99843 * 179.97438 * 14 13 12 16 16 N 1.34776 * 120.00015 * 0.02562 * 14 13 12 17 17 C 1.33295 * 119.99964 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99837 * 359.97438 * 17 16 14 19 19 C 1.46783 * 120.00420 * 179.97438 * 17 16 14 20 20 N 1.29317 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47080 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46997 * 120.00144 * 21 19 17 24 24 H 1.48500 * 109.46959 * 240.00072 * 21 19 17 25 25 C 1.39909 * 119.84872 * 0.02562 * 13 12 11 26 26 C 1.37616 * 119.79526 * 359.77241 * 25 13 12 27 27 N 1.48013 * 120.02121 * 180.25026 * 26 25 13 28 28 O 1.31706 * 120.00238 * 0.21122 * 27 26 25 29 29 O 1.31704 * 119.99913 * 180.20658 * 27 26 25 30 30 C 1.46854 * 111.19703 * 298.25280 * 9 8 5 31 31 H 1.09001 * 109.46617 * 299.92135 * 1 2 3 32 32 H 1.08993 * 109.46990 * 59.91570 * 1 2 3 33 33 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.52297 * 297.50139 * 4 2 1 35 35 H 1.08999 * 109.51925 * 57.69343 * 4 2 1 36 36 H 1.09004 * 109.47291 * 60.00223 * 7 5 4 37 37 H 1.09007 * 109.47061 * 179.97438 * 7 5 4 38 38 H 1.08995 * 109.47411 * 299.99848 * 7 5 4 39 39 H 1.09002 * 109.46466 * 299.16376 * 8 5 4 40 40 H 1.09002 * 109.45306 * 179.19059 * 8 5 4 41 41 H 1.08001 * 119.89565 * 359.97438 * 11 10 9 42 42 H 1.08002 * 119.97568 * 179.97438 * 12 11 10 43 43 H 0.96996 * 120.00062 * 359.97438 * 16 14 13 44 44 H 0.96998 * 120.00607 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.09963 * 179.97438 * 25 13 12 46 46 H 1.08994 * 109.46310 * 301.73015 * 30 9 8 47 47 H 1.09004 * 109.45281 * 181.75170 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7717 1.2110 6 1 3.9395 -1.3228 2.0762 7 6 4.1279 0.6532 1.2372 8 6 4.0229 -1.4731 -0.0719 9 7 3.5093 -0.7426 -1.2376 10 6 4.0087 -1.2763 -2.4195 11 6 3.6802 -2.5789 -2.7871 12 6 4.1681 -3.1092 -3.9469 13 6 5.0002 -2.3442 -4.7714 14 6 5.5275 -2.9160 -6.0228 15 8 6.2499 -2.2501 -6.7381 16 7 5.2080 -4.1772 -6.3746 17 6 5.6854 -4.6947 -7.5064 18 1 6.3280 -4.1031 -8.1417 19 6 5.3379 -6.0684 -7.8894 20 7 4.5689 -6.7768 -7.1284 21 14 6.0064 -6.7934 -9.4758 22 1 6.8552 -5.7859 -10.1614 23 1 6.8186 -7.9974 -9.1662 24 1 4.8764 -7.1728 -10.3614 25 6 5.3314 -1.0353 -4.4044 26 6 4.8327 -0.5058 -3.2361 27 7 5.1753 0.8802 -2.8458 28 8 5.9543 1.6086 -3.6186 29 8 4.7011 1.3852 -1.7256 30 6 2.0409 -0.7239 -1.2478 31 1 -0.3632 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7157 -0.1864 2.1399 35 1 1.6453 -1.7388 1.2695 36 1 3.8030 1.1536 2.1496 37 1 5.2171 0.6184 1.2106 38 1 3.7604 1.2029 0.3708 39 1 3.6374 -2.4926 -0.0835 40 1 5.1121 -1.4963 -0.1088 41 1 3.0382 -3.1717 -2.1524 42 1 3.9113 -4.1198 -4.2282 43 1 4.6312 -4.7085 -5.8038 44 1 4.3389 -7.6845 -7.3816 45 1 5.9738 -0.4413 -5.0376 46 1 1.6647 -1.7469 -1.2538 47 1 1.6907 -0.2029 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126885823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:41 Heat of formation + Delta-G solvation = 21.315548 kcal Electronic energy + Delta-G solvation = -31171.983040 eV Core-core repulsion = 26938.227477 eV Total energy + Delta-G solvation = -4233.755563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 3.48 seconds Orbital eigenvalues (eV) -40.93615 -39.27436 -38.41849 -37.35199 -34.82576 -34.34540 -33.78726 -33.29946 -32.30195 -31.49656 -29.79722 -26.96214 -26.78687 -26.31223 -25.75083 -24.16195 -22.27875 -22.17069 -21.58131 -20.00070 -18.86411 -18.73625 -18.04364 -17.56357 -17.01702 -16.10996 -15.74572 -15.51874 -15.31215 -15.09242 -14.79880 -14.43424 -14.35694 -14.20853 -14.11653 -13.85965 -13.68925 -13.22856 -12.98168 -12.61119 -12.50327 -12.21442 -12.19011 -12.05549 -11.64579 -11.61143 -11.58997 -11.44121 -11.10089 -10.84930 -10.75397 -10.71531 -10.63169 -10.53311 -10.50703 -10.26034 -10.18048 -9.98756 -9.46023 -8.81175 -8.68534 -8.68148 -8.54904 -7.13901 -3.97303 -0.29991 0.78624 1.42698 1.54227 2.80257 2.97727 3.04054 3.13167 3.44929 3.75690 4.04384 4.41189 4.45662 4.55984 4.60166 4.67475 4.86069 4.88389 4.89653 5.04359 5.06854 5.11398 5.23027 5.27368 5.31718 5.40509 5.49028 5.51762 5.54048 5.58087 5.67093 5.69391 5.79765 5.89860 5.91899 5.92927 6.03808 6.07892 6.16403 6.20293 6.22866 6.34143 6.51850 6.63094 6.74756 6.77767 7.09419 7.29802 7.57018 8.04677 8.72815 9.04864 9.77534 10.00210 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.002709 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.509000 B =10333.449046 C =11411.297093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.089 0.911 4 C -0.110 4.110 5 C -0.086 4.086 6 H 0.072 0.928 7 C -0.142 4.142 8 C 0.068 3.932 9 N -0.487 5.487 10 C 0.131 3.869 11 C -0.144 4.144 12 C -0.064 4.064 13 C -0.081 4.081 14 C 0.421 3.579 15 O -0.602 6.602 16 N -0.502 5.502 17 C -0.313 4.313 18 H 0.121 0.879 19 C 0.034 3.966 20 N -0.836 5.836 21 Si 0.940 3.060 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.019 4.019 26 C 0.017 3.983 27 N -0.014 5.014 28 O -0.221 6.221 29 O -0.112 6.112 30 C 0.068 3.932 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.390 0.610 44 H 0.290 0.710 45 H 0.163 0.837 46 H 0.039 0.961 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.556 4.014 15.930 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.148 4.148 5 C -0.105 4.105 6 H 0.090 0.910 7 C -0.199 4.199 8 C -0.058 4.058 9 N -0.208 5.208 10 C 0.033 3.967 11 C -0.165 4.165 12 C -0.085 4.085 13 C -0.086 4.086 14 C 0.213 3.787 15 O -0.491 6.491 16 N -0.131 5.131 17 C -0.445 4.445 18 H 0.139 0.861 19 C -0.180 4.180 20 N -0.468 5.468 21 Si 0.764 3.236 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.041 4.041 26 C -0.071 4.071 27 N 0.467 4.533 28 O -0.400 6.400 29 O -0.322 6.322 30 C -0.058 4.058 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.224 0.776 44 H 0.102 0.898 45 H 0.181 0.819 46 H 0.057 0.943 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.066 4.074 15.151 17.641 hybrid contribution -0.299 -1.358 -0.306 1.424 sum -8.365 2.717 14.844 17.254 Atomic orbital electron populations 1.21798 0.94983 1.01706 1.01929 1.21207 0.94852 1.01146 0.93634 0.89268 1.21686 0.95074 1.00202 0.97803 1.21153 0.95421 0.98006 0.95903 0.90991 1.21815 1.00559 0.95293 1.02254 1.22194 1.00144 0.94351 0.89106 1.59314 1.08773 1.53403 0.99306 1.18348 0.95278 0.91119 0.91938 1.21276 1.02249 0.94611 0.98369 1.21383 0.93932 1.00255 0.92903 1.20295 0.98177 0.93112 0.97046 1.17078 0.90207 0.83777 0.87623 1.90623 1.43325 1.60384 1.54770 1.40979 1.40255 1.11425 1.20402 1.21014 1.28112 0.95863 0.99474 0.86134 1.27080 0.95341 0.95727 0.99858 1.68627 1.29641 1.10814 1.37746 0.85609 0.79226 0.79046 0.79673 1.18047 1.19934 1.19937 1.21050 0.95598 0.94929 0.92514 1.20176 1.06822 0.81181 0.98881 1.50272 0.98536 1.03312 1.01197 1.96289 1.34383 1.59518 1.49776 1.96220 1.53037 1.75752 1.07143 1.22224 0.85016 0.99333 0.99224 0.92372 0.92539 0.92882 0.91635 0.92397 0.93864 0.93246 0.89543 0.94314 0.90713 0.84322 0.84145 0.77572 0.89835 0.81944 0.94262 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.09 -0.78 2.53 -90.53 -0.23 -1.01 16 3 H 0.09 0.89 6.58 -51.93 -0.34 0.54 16 4 C -0.11 -0.87 4.79 -26.60 -0.13 -0.99 16 5 C -0.09 -0.77 3.21 -90.54 -0.29 -1.06 16 6 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 7 C -0.14 -1.43 8.67 37.16 0.32 -1.10 16 8 C 0.07 0.72 4.60 -3.84 -0.02 0.70 16 9 N -0.49 -5.88 1.66 -171.14 -0.28 -6.16 16 10 C 0.13 1.84 4.66 -83.86 -0.39 1.45 16 11 C -0.14 -1.84 8.60 -39.81 -0.34 -2.18 16 12 C -0.06 -0.95 9.48 -39.57 -0.38 -1.33 16 13 C -0.08 -1.51 5.88 -104.94 -0.62 -2.13 16 14 C 0.42 9.79 7.69 -12.56 -0.10 9.69 16 15 O -0.60 -16.34 15.86 5.34 0.08 -16.25 16 16 N -0.50 -11.66 5.12 -10.72 -0.05 -11.71 16 17 C -0.31 -7.86 9.92 -13.46 -0.13 -7.99 16 18 H 0.12 3.23 7.19 -52.48 -0.38 2.85 16 19 C 0.03 0.78 5.69 -15.16 -0.09 0.70 16 20 N -0.84 -19.11 13.09 56.00 0.73 -18.37 16 21 Si 0.94 18.05 29.65 -169.99 -5.04 13.01 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.02 -0.36 9.12 -39.18 -0.36 -0.72 16 26 C 0.02 0.29 6.90 -79.79 -0.55 -0.26 16 27 N -0.01 -0.25 4.98 34.04 0.17 -0.08 16 28 O -0.22 -4.41 19.15 -31.57 -0.60 -5.02 16 29 O -0.11 -1.90 15.98 -31.57 -0.50 -2.40 16 30 C 0.07 0.70 4.39 -3.83 -0.02 0.69 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.02 4.27 -51.93 -0.22 0.79 16 39 H 0.04 0.37 7.52 -51.93 -0.39 -0.02 16 40 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 41 H 0.14 1.39 7.08 -52.49 -0.37 1.02 16 42 H 0.14 1.93 6.39 -52.49 -0.34 1.60 16 43 H 0.39 8.25 5.99 -40.82 -0.24 8.00 16 44 H 0.29 6.07 8.26 -40.82 -0.34 5.73 16 45 H 0.16 3.24 7.16 -52.48 -0.38 2.87 16 46 H 0.04 0.37 7.30 -51.93 -0.38 -0.01 16 47 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 381.23 15.07 5.75 5.75 Total: -1.00 -28.11 381.23 -9.12 -37.23 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.39 Total: 10.28 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.97 Total: -6.27 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.56 Total: -36.33 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.02 Total: -23.67 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.04 Total: 13.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.11 -9.12 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126885823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.546 kcal (2) G-P(sol) polarization free energy of solvation -28.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.48 seconds