Wall clock time and date at job start Wed Apr 1 2020 04:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.50579 * 2 1 4 4 C 1.53126 * 109.50147 * 120.07927 * 2 1 3 5 5 C 1.53124 * 109.15878 * 177.59192 * 4 2 1 6 6 H 1.08993 * 109.49981 * 182.40384 * 5 4 2 7 7 C 1.52998 * 109.49854 * 62.28635 * 5 4 2 8 8 C 1.53035 * 109.27794 * 302.34791 * 5 4 2 9 9 N 1.46844 * 109.52494 * 59.18054 * 8 5 4 10 10 C 1.38968 * 111.00191 * 174.15909 * 9 8 5 11 11 C 1.39281 * 119.92414 * 64.20671 * 10 9 8 12 12 C 1.36545 * 120.20416 * 180.02562 * 11 10 9 13 13 C 1.39910 * 120.04825 * 359.96007 * 12 11 10 14 14 C 1.47344 * 120.07403 * 179.97438 * 13 12 11 15 15 O 1.21528 * 119.99843 * 179.97438 * 14 13 12 16 16 N 1.34776 * 120.00015 * 0.02562 * 14 13 12 17 17 C 1.33295 * 119.99964 * 180.02562 * 16 14 13 18 18 H 1.08006 * 119.99837 * 359.97438 * 17 16 14 19 19 C 1.46783 * 120.00420 * 179.97438 * 17 16 14 20 20 N 1.29317 * 119.99885 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00472 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47080 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46997 * 120.00144 * 21 19 17 24 24 H 1.48500 * 109.46959 * 240.00072 * 21 19 17 25 25 C 1.39909 * 119.84872 * 0.02562 * 13 12 11 26 26 C 1.37616 * 119.79526 * 359.77241 * 25 13 12 27 27 N 1.48013 * 120.02121 * 180.25026 * 26 25 13 28 28 O 1.31706 * 120.00238 * 0.21122 * 27 26 25 29 29 O 1.31704 * 119.99913 * 180.20658 * 27 26 25 30 30 C 1.46854 * 111.19703 * 298.25280 * 9 8 5 31 31 H 1.09001 * 109.46617 * 299.92135 * 1 2 3 32 32 H 1.08993 * 109.46990 * 59.91570 * 1 2 3 33 33 H 1.09000 * 109.47147 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.52297 * 297.50139 * 4 2 1 35 35 H 1.08999 * 109.51925 * 57.69343 * 4 2 1 36 36 H 1.09004 * 109.47291 * 60.00223 * 7 5 4 37 37 H 1.09007 * 109.47061 * 179.97438 * 7 5 4 38 38 H 1.08995 * 109.47411 * 299.99848 * 7 5 4 39 39 H 1.09002 * 109.46466 * 299.16376 * 8 5 4 40 40 H 1.09002 * 109.45306 * 179.19059 * 8 5 4 41 41 H 1.08001 * 119.89565 * 359.97438 * 11 10 9 42 42 H 1.08002 * 119.97568 * 179.97438 * 12 11 10 43 43 H 0.96996 * 120.00062 * 359.97438 * 16 14 13 44 44 H 0.96998 * 120.00607 * 179.97438 * 20 19 17 45 45 H 1.08003 * 120.09963 * 179.97438 * 25 13 12 46 46 H 1.08994 * 109.46310 * 301.73015 * 30 9 8 47 47 H 1.09004 * 109.45281 * 181.75170 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7717 1.2110 6 1 3.9395 -1.3228 2.0762 7 6 4.1279 0.6532 1.2372 8 6 4.0229 -1.4731 -0.0719 9 7 3.5093 -0.7426 -1.2376 10 6 4.0087 -1.2763 -2.4195 11 6 3.6802 -2.5789 -2.7871 12 6 4.1681 -3.1092 -3.9469 13 6 5.0002 -2.3442 -4.7714 14 6 5.5275 -2.9160 -6.0228 15 8 6.2499 -2.2501 -6.7381 16 7 5.2080 -4.1772 -6.3746 17 6 5.6854 -4.6947 -7.5064 18 1 6.3280 -4.1031 -8.1417 19 6 5.3379 -6.0684 -7.8894 20 7 4.5689 -6.7768 -7.1284 21 14 6.0064 -6.7934 -9.4758 22 1 6.8552 -5.7859 -10.1614 23 1 6.8186 -7.9974 -9.1662 24 1 4.8764 -7.1728 -10.3614 25 6 5.3314 -1.0353 -4.4044 26 6 4.8327 -0.5058 -3.2361 27 7 5.1753 0.8802 -2.8458 28 8 5.9543 1.6086 -3.6186 29 8 4.7011 1.3852 -1.7256 30 6 2.0409 -0.7239 -1.2478 31 1 -0.3632 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7157 -0.1864 2.1399 35 1 1.6453 -1.7388 1.2695 36 1 3.8030 1.1536 2.1496 37 1 5.2171 0.6184 1.2106 38 1 3.7604 1.2029 0.3708 39 1 3.6374 -2.4926 -0.0835 40 1 5.1121 -1.4963 -0.1088 41 1 3.0382 -3.1717 -2.1524 42 1 3.9113 -4.1198 -4.2282 43 1 4.6312 -4.7085 -5.8038 44 1 4.3389 -7.6845 -7.3816 45 1 5.9738 -0.4413 -5.0376 46 1 1.6647 -1.7469 -1.2538 47 1 1.6907 -0.2029 -2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126885823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:40 Heat of formation + Delta-G solvation = 6.763368 kcal Electronic energy + Delta-G solvation = -31172.614070 eV Core-core repulsion = 26938.227477 eV Total energy + Delta-G solvation = -4234.386593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14945 -40.60467 -39.90593 -38.77259 -36.30375 -35.81052 -35.22304 -34.02337 -33.98732 -32.94902 -31.10765 -27.87336 -27.71761 -27.47023 -27.06861 -25.50131 -23.62350 -23.38823 -22.36597 -21.57591 -20.59635 -19.56747 -19.51745 -19.03382 -18.14168 -17.66588 -17.10068 -17.03476 -16.60441 -16.21383 -15.77529 -15.73639 -15.60266 -15.49456 -15.35333 -15.01565 -14.78213 -14.54584 -13.91814 -13.86510 -13.75543 -13.60713 -13.05752 -13.02009 -12.93787 -12.73217 -12.50162 -12.48385 -12.38366 -12.20186 -12.17627 -12.13605 -11.80458 -11.72877 -11.71336 -11.35167 -11.22929 -10.96045 -10.78650 -10.60954 -10.46542 -10.18626 -9.51381 -8.84911 -5.88474 -1.71885 -0.58881 0.05962 0.11540 1.27249 1.40274 1.51482 1.68623 2.19039 2.38416 2.39798 2.82148 3.08312 3.32657 3.57649 3.65104 3.70798 3.76518 3.90004 3.91538 4.01285 4.16320 4.25331 4.33685 4.44220 4.50229 4.61649 4.65125 4.73604 4.77386 4.78126 4.82888 4.87807 4.95087 4.95663 5.02359 5.03137 5.12166 5.19445 5.24928 5.33383 5.39882 5.50643 5.52905 5.69645 5.72370 5.88731 5.96893 6.04378 6.29777 6.93703 7.28915 7.99747 8.29197 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.002709 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.509000 B =10333.449046 C =11411.297093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.105 4.105 5 C -0.082 4.082 6 H 0.090 0.910 7 C -0.142 4.142 8 C 0.064 3.936 9 N -0.504 5.504 10 C 0.172 3.828 11 C -0.128 4.128 12 C -0.032 4.032 13 C -0.099 4.099 14 C 0.416 3.584 15 O -0.652 6.652 16 N -0.501 5.501 17 C -0.378 4.378 18 H 0.085 0.915 19 C 0.016 3.984 20 N -0.851 5.851 21 Si 0.998 3.002 22 H -0.274 1.274 23 H -0.260 1.260 24 H -0.260 1.260 25 C -0.027 4.027 26 C 0.000 4.000 27 N -0.016 5.016 28 O -0.297 6.297 29 O -0.056 6.056 30 C 0.065 3.935 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.190 0.810 42 H 0.161 0.839 43 H 0.399 0.601 44 H 0.300 0.700 45 H 0.133 0.867 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 2.082 19.797 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.142 4.142 5 C -0.100 4.100 6 H 0.108 0.892 7 C -0.199 4.199 8 C -0.061 4.061 9 N -0.226 5.226 10 C 0.074 3.926 11 C -0.148 4.148 12 C -0.053 4.053 13 C -0.104 4.104 14 C 0.208 3.792 15 O -0.545 6.545 16 N -0.131 5.131 17 C -0.508 4.508 18 H 0.103 0.897 19 C -0.197 4.197 20 N -0.484 5.484 21 Si 0.820 3.180 22 H -0.199 1.199 23 H -0.185 1.185 24 H -0.185 1.185 25 C -0.049 4.049 26 C -0.088 4.088 27 N 0.465 4.535 28 O -0.457 6.457 29 O -0.284 6.284 30 C -0.060 4.060 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.207 0.793 42 H 0.179 0.821 43 H 0.235 0.765 44 H 0.112 0.888 45 H 0.151 0.849 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.125 2.157 18.909 22.044 hybrid contribution 0.457 -0.541 -1.004 1.229 sum -10.668 1.616 17.905 20.905 Atomic orbital electron populations 1.21763 0.93729 1.02384 1.02155 1.21167 0.95766 1.00208 0.93328 0.90818 1.21664 0.93907 1.01045 0.97584 1.21162 0.96344 0.96970 0.95564 0.89201 1.21788 0.99680 0.96336 1.02082 1.22331 0.99511 0.95586 0.88673 1.59381 1.10382 1.54061 0.98800 1.18683 0.91633 0.90782 0.91516 1.21722 1.01560 0.93892 0.97603 1.21617 0.91030 1.00389 0.92214 1.19929 1.00505 0.93563 0.96412 1.17757 0.89319 0.83588 0.88507 1.90569 1.45316 1.61733 1.56838 1.40766 1.40720 1.11298 1.20296 1.20708 1.31520 0.97405 1.01176 0.89718 1.27675 0.94980 0.94903 1.02165 1.68607 1.29739 1.11375 1.38631 0.84810 0.78818 0.78035 0.76386 1.19852 1.18491 1.18500 1.20787 0.95940 0.94949 0.93189 1.20327 1.08277 0.80885 0.99296 1.50406 0.98335 1.03788 1.00987 1.96321 1.37732 1.60548 1.51102 1.96179 1.50392 1.75623 1.06224 1.22359 0.83162 1.00788 0.99728 0.91501 0.93107 0.91921 0.90554 0.90920 0.92564 0.94602 0.91402 0.91870 0.92063 0.79301 0.82109 0.76523 0.88772 0.84915 0.91962 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.20 71.98 0.66 -0.82 16 2 C -0.09 -1.13 2.53 -10.74 -0.03 -1.16 16 3 H 0.07 1.23 6.58 -2.39 -0.02 1.21 16 4 C -0.10 -1.09 4.79 30.68 0.15 -0.94 16 5 C -0.08 -1.08 3.21 -10.74 -0.03 -1.11 16 6 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 7 C -0.14 -2.41 8.67 71.98 0.62 -1.79 16 8 C 0.06 1.04 4.60 86.33 0.40 1.44 16 9 N -0.50 -10.22 1.66 -695.37 -1.15 -11.37 16 10 C 0.17 4.29 4.66 38.51 0.18 4.46 16 11 C -0.13 -2.63 8.60 22.12 0.19 -2.44 16 12 C -0.03 -0.87 9.48 22.28 0.21 -0.66 16 13 C -0.10 -3.78 5.88 -20.07 -0.12 -3.89 16 14 C 0.42 20.51 7.69 86.64 0.67 21.18 16 15 O -0.65 -38.49 15.86 -3.81 -0.06 -38.55 16 16 N -0.50 -24.31 5.12 -306.11 -1.57 -25.88 16 17 C -0.38 -20.11 9.92 86.71 0.86 -19.25 16 18 H 0.08 4.99 7.19 -2.91 -0.02 4.97 16 19 C 0.02 0.73 5.69 87.30 0.50 1.22 16 20 N -0.85 -38.63 13.09 23.26 0.30 -38.32 16 21 Si 1.00 37.60 29.65 68.60 2.03 39.63 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 24 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 25 C -0.03 -1.04 9.12 22.53 0.21 -0.84 16 26 C 0.00 0.00 6.90 36.48 0.25 0.25 16 27 N -0.02 -0.58 4.98 -46.23 -0.23 -0.81 16 28 O -0.30 -12.80 19.15 3.50 0.07 -12.73 16 29 O -0.06 -1.84 15.98 3.51 0.06 -1.78 16 30 C 0.06 1.04 4.39 86.32 0.38 1.42 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 1.42 4.27 -2.39 -0.01 1.41 16 39 H 0.06 0.77 7.52 -2.39 -0.02 0.75 16 40 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 41 H 0.19 2.26 7.08 -2.91 -0.02 2.24 16 42 H 0.16 3.85 6.39 -2.91 -0.02 3.83 16 43 H 0.40 17.05 5.99 -92.71 -0.56 16.49 16 44 H 0.30 12.22 8.26 -92.71 -0.77 11.45 16 45 H 0.13 5.93 7.16 -2.91 -0.02 5.91 16 46 H 0.06 0.76 7.30 -2.39 -0.02 0.74 16 47 H 0.06 1.18 8.10 -2.38 -0.02 1.16 16 Total: -1.00 -68.28 381.23 5.00 -63.28 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.46 Total: 29.46 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.09 Total: -2.93 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -2.65 Total: -76.38 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: 0.06 Total: -53.07 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -68.28 5.00 -63.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126885823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.040 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds