Wall clock time and date at job start Wed Apr 1 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47062 * 2 1 4 4 N 1.46502 * 109.47180 * 119.99980 * 2 1 3 5 5 C 1.34774 * 119.99857 * 274.99971 * 4 2 1 6 6 O 1.21590 * 120.00482 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00018 * 180.02562 * 5 4 2 8 8 C 1.46491 * 120.00071 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47187 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47322 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00232 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99926 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00105 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99963 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46974 * 90.00540 * 14 12 10 16 16 H 1.48496 * 109.46992 * 210.00370 * 14 12 10 17 17 H 1.48495 * 109.47134 * 330.00935 * 14 12 10 18 18 C 1.50703 * 109.47289 * 240.00312 * 2 1 3 19 19 C 1.38298 * 119.96072 * 279.97613 * 18 2 1 20 20 C 1.38262 * 120.13614 * 179.97438 * 19 18 2 21 21 C 1.38135 * 120.07098 * 359.76388 * 20 19 18 22 22 C 1.38846 * 119.92854 * 0.51507 * 21 20 19 23 23 N 1.39955 * 120.07096 * 179.74077 * 22 21 20 24 24 C 1.47096 * 125.55717 * 359.72437 * 23 22 21 25 25 C 1.54086 * 103.77569 * 179.97438 * 24 23 22 26 26 O 1.45695 * 104.01260 * 359.97438 * 25 24 23 27 27 C 1.33786 * 109.47606 * 359.77324 * 26 25 24 28 28 O 1.21506 * 123.07501 * 180.27064 * 27 26 25 29 29 C 1.38090 * 119.96635 * 100.00145 * 18 2 1 30 30 H 1.09002 * 109.47515 * 59.99850 * 1 2 3 31 31 H 1.09000 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47434 * 299.99807 * 1 2 3 33 33 H 0.96996 * 120.00149 * 95.00520 * 4 2 1 34 34 H 0.97003 * 119.99388 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.47620 * 300.00012 * 8 7 5 36 36 H 1.09004 * 109.47681 * 60.00105 * 8 7 5 37 37 H 1.09001 * 109.46825 * 300.00014 * 9 8 7 38 38 H 1.08995 * 109.47151 * 59.99878 * 9 8 7 39 39 H 0.96999 * 120.00163 * 179.97438 * 13 12 10 40 40 H 1.08002 * 119.93582 * 0.02562 * 19 18 2 41 41 H 1.07995 * 119.96489 * 180.02562 * 20 19 18 42 42 H 1.08003 * 120.03839 * 180.25462 * 21 20 19 43 43 H 1.09000 * 110.56070 * 298.53779 * 24 23 22 44 44 H 1.08990 * 110.56282 * 61.23823 * 24 23 22 45 45 H 1.09002 * 110.52031 * 118.63293 * 25 24 23 46 46 H 1.09005 * 110.51922 * 241.36274 * 25 24 23 47 47 H 1.08004 * 120.03496 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8574 1.1614 2.4119 7 7 2.5968 -0.6534 3.4575 8 6 2.7362 0.0772 4.7195 9 6 3.2607 -0.8690 5.8014 10 6 3.4047 -0.1172 7.0995 11 1 3.1474 0.9306 7.1482 12 6 3.8639 -0.7672 8.2254 13 7 4.1767 -2.0432 8.1663 14 14 4.0430 0.1648 9.8343 15 1 2.7753 0.0746 10.6025 16 1 5.1473 -0.4290 10.6300 17 1 4.3487 1.5898 9.5495 18 6 2.0323 -0.7103 -1.2305 19 6 2.0669 -2.0925 -1.2644 20 6 2.5266 -2.7479 -2.3917 21 6 2.9484 -2.0237 -3.4897 22 6 2.9204 -0.6359 -3.4566 23 7 3.3521 0.1009 -4.5654 24 6 3.8630 -0.4661 -5.8229 25 6 4.1857 0.7732 -6.6797 26 8 3.8262 1.8967 -5.8246 27 6 3.3615 1.4377 -4.6571 28 8 2.9852 2.1665 -3.7606 29 6 2.4581 0.0195 -2.3227 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 2.8282 -1.5945 3.4137 35 1 3.4367 0.9017 4.5866 36 1 1.7652 0.4705 5.0209 37 1 2.5598 -1.6931 5.9342 38 1 4.2315 -1.2626 5.5004 39 1 4.5001 -2.5005 8.9582 40 1 1.7333 -2.6611 -0.4089 41 1 2.5520 -3.8273 -2.4153 42 1 3.3035 -2.5363 -4.3715 43 1 4.7646 -1.0509 -5.6407 44 1 3.1010 -1.0793 -6.3038 45 1 5.2476 0.8029 -6.9239 46 1 3.5836 0.7769 -7.5884 47 1 2.4309 1.0988 -2.2956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273151131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:29 Heat of formation + Delta-G solvation = -69.551587 kcal Electronic energy + Delta-G solvation = -29343.236540 eV Core-core repulsion = 25105.540682 eV Total energy + Delta-G solvation = -4237.695858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42109 -40.19672 -39.21384 -37.81223 -36.61296 -35.24950 -34.47949 -32.84997 -31.76066 -31.31222 -29.78887 -29.45316 -28.80548 -25.10206 -24.73180 -24.24422 -23.44548 -21.81307 -21.22848 -20.64839 -20.17630 -18.57771 -18.04319 -17.92002 -17.50651 -16.71318 -16.36056 -15.98219 -15.64090 -15.16956 -15.08688 -14.79303 -14.62130 -14.55405 -14.42845 -14.31327 -13.91099 -13.74486 -13.59910 -13.32308 -13.11264 -12.93841 -12.51212 -12.32809 -12.26019 -12.21831 -11.68352 -11.34137 -11.14670 -11.10648 -10.99471 -10.79532 -10.59658 -10.57765 -10.27031 -9.86883 -9.51531 -9.24527 -9.18756 -8.94119 -8.44771 -8.44113 -8.19485 -6.05703 -4.07957 0.85407 1.01969 1.70617 2.21936 2.76718 3.07696 3.32572 3.38482 3.39248 3.43209 3.45893 3.67281 3.90726 3.96984 4.36650 4.43152 4.48416 4.53944 4.69920 4.73076 4.73400 4.81072 4.92781 5.03973 5.23489 5.31457 5.33455 5.33811 5.59676 5.71228 5.84973 5.92291 5.99866 6.06752 6.20511 6.27260 6.37777 6.45958 6.62215 6.71207 6.77423 6.83728 7.06974 7.30006 7.42094 7.61695 7.68103 7.93929 8.30504 8.50043 8.97235 9.07230 9.56582 11.05980 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.001730 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.352382 B =16179.785473 C =16461.530128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.201 3.799 3 H 0.099 0.901 4 N -0.748 5.748 5 C 0.700 3.300 6 O -0.595 6.595 7 N -0.739 5.739 8 C 0.140 3.860 9 C 0.013 3.987 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.054 4.054 19 C -0.133 4.133 20 C -0.086 4.086 21 C -0.157 4.157 22 C 0.181 3.819 23 N -0.570 5.570 24 C 0.059 3.941 25 C 0.042 3.958 26 O -0.320 6.320 27 C 0.642 3.358 28 O -0.494 6.494 29 C -0.140 4.140 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.392 0.608 34 H 0.392 0.608 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.112 0.888 46 H 0.112 0.888 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -5.058 -35.549 35.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.096 3.904 3 H 0.117 0.883 4 N -0.405 5.405 5 C 0.400 3.600 6 O -0.474 6.474 7 N -0.392 5.392 8 C 0.017 3.983 9 C -0.025 4.025 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.055 4.055 19 C -0.153 4.153 20 C -0.105 4.105 21 C -0.177 4.177 22 C 0.089 3.911 23 N -0.307 5.307 24 C -0.063 4.063 25 C -0.033 4.033 26 O -0.230 6.230 27 C 0.397 3.603 28 O -0.377 6.377 29 C -0.161 4.161 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.225 0.775 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.150 -3.384 -35.020 35.249 hybrid contribution 0.481 -0.836 0.647 1.162 sum -1.668 -4.220 -34.373 34.671 Atomic orbital electron populations 1.22177 0.94265 1.02237 1.02886 1.19548 0.93983 0.96673 0.80227 0.88332 1.45264 1.72891 1.13467 1.08861 1.16045 0.78543 0.85174 0.80285 1.90894 1.57439 1.14424 1.84645 1.45525 1.69837 1.13921 1.09935 1.21584 1.00395 0.95586 0.80692 1.19328 0.96568 0.94634 0.91963 1.21064 1.44121 0.96667 0.93966 0.92206 1.24995 0.95239 0.94931 0.99175 1.69957 1.44719 1.09190 1.29537 0.86509 0.77726 0.80095 0.83209 1.20584 1.21217 1.19718 1.19877 0.97084 0.93643 0.94931 1.20983 1.01686 0.93764 0.98828 1.20891 0.97367 0.99876 0.92326 1.20668 1.05806 0.90926 1.00337 1.17308 0.98237 0.90244 0.85359 1.45360 1.63920 1.06010 1.15426 1.22982 1.02072 0.97491 0.83779 1.24365 1.04025 0.81313 0.93626 1.87356 1.77003 1.32822 1.25812 1.18488 0.77601 0.81712 0.82480 1.91003 1.50048 1.59939 1.36696 1.21409 1.00480 1.02759 0.91422 0.91712 0.92415 0.91161 0.77298 0.77470 0.92792 0.92784 0.95975 0.95979 0.92915 0.85586 0.85147 0.85710 0.88034 0.88063 0.86983 0.87039 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.46 37.15 0.35 -1.49 16 2 C 0.20 2.58 2.77 -69.08 -0.19 2.39 16 3 H 0.10 1.51 7.44 -51.93 -0.39 1.12 16 4 N -0.75 -10.14 5.03 -59.81 -0.30 -10.44 16 5 C 0.70 12.79 8.53 -86.91 -0.74 12.04 16 6 O -0.60 -13.29 16.01 5.29 0.08 -13.21 16 7 N -0.74 -13.54 5.56 -65.22 -0.36 -13.90 16 8 C 0.14 3.11 5.61 -4.05 -0.02 3.09 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 11 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 14 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 C -0.05 -0.58 4.95 -104.65 -0.52 -1.10 16 19 C -0.13 -1.15 9.05 -39.55 -0.36 -1.50 16 20 C -0.09 -0.60 10.04 -39.61 -0.40 -1.00 16 21 C -0.16 -1.08 9.49 -39.39 -0.37 -1.45 16 22 C 0.18 1.68 6.63 -83.68 -0.56 1.12 16 23 N -0.57 -4.54 3.16 -118.27 -0.37 -4.92 16 24 C 0.06 0.15 6.49 -3.15 -0.02 0.13 16 25 C 0.04 0.09 8.23 37.72 0.31 0.40 16 26 O -0.32 -2.66 11.09 -37.87 -0.42 -3.08 16 27 C 0.64 6.95 8.77 53.71 0.47 7.42 16 28 O -0.49 -7.35 14.75 -19.11 -0.28 -7.63 16 29 C -0.14 -1.62 8.93 -39.40 -0.35 -1.97 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.39 4.20 6.88 -40.82 -0.28 3.92 16 34 H 0.39 6.15 8.49 -40.82 -0.35 5.80 16 35 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 0.90 6.91 -52.49 -0.36 0.54 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.49 7.31 -52.48 -0.38 0.11 16 43 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 44 H 0.10 0.05 8.14 -51.93 -0.42 -0.38 16 45 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.11 -0.03 8.14 -51.93 -0.42 -0.46 16 47 H 0.16 2.18 5.22 -52.48 -0.27 1.90 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -37.51 394.27 -9.60 -47.10 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.65 Total: 4.28 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -2.95 Total: 4.83 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.30 Total: -54.91 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.62 Total: -23.92 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.51 -9.60 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273151131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.449 kcal (2) G-P(sol) polarization free energy of solvation -37.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds