Wall clock time and date at job start Wed Apr 1 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47062 * 2 1 4 4 N 1.46502 * 109.47180 * 119.99980 * 2 1 3 5 5 C 1.34774 * 119.99857 * 274.99971 * 4 2 1 6 6 O 1.21590 * 120.00482 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00018 * 180.02562 * 5 4 2 8 8 C 1.46491 * 120.00071 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47187 * 179.97438 * 8 7 5 10 10 C 1.50700 * 109.47322 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00232 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99926 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00105 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99963 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46974 * 90.00540 * 14 12 10 16 16 H 1.48496 * 109.46992 * 210.00370 * 14 12 10 17 17 H 1.48495 * 109.47134 * 330.00935 * 14 12 10 18 18 C 1.50703 * 109.47289 * 240.00312 * 2 1 3 19 19 C 1.38298 * 119.96072 * 279.97613 * 18 2 1 20 20 C 1.38262 * 120.13614 * 179.97438 * 19 18 2 21 21 C 1.38135 * 120.07098 * 359.76388 * 20 19 18 22 22 C 1.38846 * 119.92854 * 0.51507 * 21 20 19 23 23 N 1.39955 * 120.07096 * 179.74077 * 22 21 20 24 24 C 1.47096 * 125.55717 * 359.72437 * 23 22 21 25 25 C 1.54086 * 103.77569 * 179.97438 * 24 23 22 26 26 O 1.45695 * 104.01260 * 359.97438 * 25 24 23 27 27 C 1.33786 * 109.47606 * 359.77324 * 26 25 24 28 28 O 1.21506 * 123.07501 * 180.27064 * 27 26 25 29 29 C 1.38090 * 119.96635 * 100.00145 * 18 2 1 30 30 H 1.09002 * 109.47515 * 59.99850 * 1 2 3 31 31 H 1.09000 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47434 * 299.99807 * 1 2 3 33 33 H 0.96996 * 120.00149 * 95.00520 * 4 2 1 34 34 H 0.97003 * 119.99388 * 0.02562 * 7 5 4 35 35 H 1.09006 * 109.47620 * 300.00012 * 8 7 5 36 36 H 1.09004 * 109.47681 * 60.00105 * 8 7 5 37 37 H 1.09001 * 109.46825 * 300.00014 * 9 8 7 38 38 H 1.08995 * 109.47151 * 59.99878 * 9 8 7 39 39 H 0.96999 * 120.00163 * 179.97438 * 13 12 10 40 40 H 1.08002 * 119.93582 * 0.02562 * 19 18 2 41 41 H 1.07995 * 119.96489 * 180.02562 * 20 19 18 42 42 H 1.08003 * 120.03839 * 180.25462 * 21 20 19 43 43 H 1.09000 * 110.56070 * 298.53779 * 24 23 22 44 44 H 1.08990 * 110.56282 * 61.23823 * 24 23 22 45 45 H 1.09002 * 110.52031 * 118.63293 * 25 24 23 46 46 H 1.09005 * 110.51922 * 241.36274 * 25 24 23 47 47 H 1.08004 * 120.03496 * 359.97438 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8574 1.1614 2.4119 7 7 2.5968 -0.6534 3.4575 8 6 2.7362 0.0772 4.7195 9 6 3.2607 -0.8690 5.8014 10 6 3.4047 -0.1172 7.0995 11 1 3.1474 0.9306 7.1482 12 6 3.8639 -0.7672 8.2254 13 7 4.1767 -2.0432 8.1663 14 14 4.0430 0.1648 9.8343 15 1 2.7753 0.0746 10.6025 16 1 5.1473 -0.4290 10.6300 17 1 4.3487 1.5898 9.5495 18 6 2.0323 -0.7103 -1.2305 19 6 2.0669 -2.0925 -1.2644 20 6 2.5266 -2.7479 -2.3917 21 6 2.9484 -2.0237 -3.4897 22 6 2.9204 -0.6359 -3.4566 23 7 3.3521 0.1009 -4.5654 24 6 3.8630 -0.4661 -5.8229 25 6 4.1857 0.7732 -6.6797 26 8 3.8262 1.8967 -5.8246 27 6 3.3615 1.4377 -4.6571 28 8 2.9852 2.1665 -3.7606 29 6 2.4581 0.0195 -2.3227 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 2.8282 -1.5945 3.4137 35 1 3.4367 0.9017 4.5866 36 1 1.7652 0.4705 5.0209 37 1 2.5598 -1.6931 5.9342 38 1 4.2315 -1.2626 5.5004 39 1 4.5001 -2.5005 8.9582 40 1 1.7333 -2.6611 -0.4089 41 1 2.5520 -3.8273 -2.4153 42 1 3.3035 -2.5363 -4.3715 43 1 4.7646 -1.0509 -5.6407 44 1 3.1010 -1.0793 -6.3038 45 1 5.2476 0.8029 -6.9239 46 1 3.5836 0.7769 -7.5884 47 1 2.4309 1.0988 -2.2956 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273151131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:28 Heat of formation + Delta-G solvation = -96.527745 kcal Electronic energy + Delta-G solvation = -29344.406314 eV Core-core repulsion = 25105.540682 eV Total energy + Delta-G solvation = -4238.865632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.99461 -41.32656 -40.24898 -38.60053 -37.54278 -36.55787 -35.80570 -34.83466 -32.91075 -31.88297 -31.15831 -30.08484 -29.97797 -26.75089 -25.51166 -24.96698 -24.31802 -22.93803 -22.48550 -22.04000 -21.19298 -19.70813 -18.88774 -18.51801 -18.43986 -18.09482 -17.47315 -17.09610 -16.65009 -16.53562 -16.40492 -15.83417 -15.59930 -15.35178 -15.21524 -15.18495 -14.99084 -14.89928 -14.63005 -14.44953 -14.27624 -14.11030 -13.39503 -13.34320 -13.20375 -13.11165 -12.97914 -12.92651 -12.54012 -12.49376 -12.22736 -12.02829 -11.89237 -11.68026 -11.50370 -11.37978 -11.25594 -11.18566 -10.59858 -10.40897 -9.88536 -9.73270 -9.06800 -8.23344 -6.33307 0.17965 0.32912 1.15821 1.42045 1.42728 1.49546 1.54179 1.74552 2.15388 2.41162 2.42199 2.78205 3.11301 3.21047 3.31869 3.39342 3.67428 3.92441 3.99149 4.13599 4.22657 4.25199 4.33734 4.37075 4.48271 4.52228 4.52688 4.56105 4.67253 4.68038 4.74287 4.86532 4.89424 5.00154 5.18261 5.30068 5.31776 5.33491 5.39943 5.47304 5.52175 5.60435 5.66011 5.79669 5.96676 6.04148 6.18236 6.18821 6.71243 6.79336 7.12369 7.35696 7.59068 8.88521 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.001730 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.352382 B =16179.785473 C =16461.530128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 H 0.061 0.939 4 N -0.724 5.724 5 C 0.699 3.301 6 O -0.639 6.639 7 N -0.731 5.731 8 C 0.160 3.840 9 C 0.025 3.975 10 C -0.547 4.547 11 H 0.057 0.943 12 C 0.008 3.992 13 N -0.925 5.925 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.268 1.268 18 C -0.066 4.066 19 C -0.136 4.136 20 C -0.078 4.078 21 C -0.139 4.139 22 C 0.169 3.831 23 N -0.568 5.568 24 C 0.055 3.945 25 C 0.034 3.966 26 O -0.341 6.341 27 C 0.634 3.366 28 O -0.554 6.554 29 C -0.169 4.169 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.410 0.590 34 H 0.408 0.592 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.011 0.989 38 H 0.009 0.991 39 H 0.266 0.734 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.166 0.834 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.230 -8.203 -37.769 38.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.097 3.903 3 H 0.079 0.921 4 N -0.382 5.382 5 C 0.398 3.602 6 O -0.521 6.521 7 N -0.386 5.386 8 C 0.036 3.964 9 C -0.013 4.013 10 C -0.586 4.586 11 H 0.075 0.925 12 C -0.191 4.191 13 N -0.564 5.564 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.193 1.193 18 C -0.068 4.068 19 C -0.155 4.155 20 C -0.096 4.096 21 C -0.159 4.159 22 C 0.076 3.924 23 N -0.304 5.304 24 C -0.066 4.066 25 C -0.039 4.039 26 O -0.250 6.250 27 C 0.389 3.611 28 O -0.442 6.442 29 C -0.190 4.190 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.248 0.752 34 H 0.243 0.757 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.160 0.840 41 H 0.185 0.815 42 H 0.184 0.816 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.542 -6.613 -37.332 37.944 hybrid contribution 0.342 0.075 1.151 1.203 sum -1.199 -6.538 -36.181 36.786 Atomic orbital electron populations 1.22092 0.93354 1.03334 1.01967 1.19498 0.94702 0.95190 0.80907 0.92102 1.45045 1.71533 1.14096 1.07509 1.16157 0.78183 0.84689 0.81126 1.90868 1.59226 1.16585 1.85441 1.45185 1.70060 1.14458 1.08894 1.21078 0.99149 0.94662 0.81522 1.19128 0.95599 0.94460 0.92111 1.21460 1.44615 0.96961 0.95525 0.92465 1.25852 0.94667 0.95847 1.02733 1.70051 1.45126 1.10520 1.30745 0.85448 0.78069 0.78783 0.78756 1.19700 1.20385 1.19298 1.19595 0.98876 0.94705 0.93592 1.21202 1.01509 0.92435 1.00335 1.21343 0.95422 1.01622 0.91195 1.21106 1.03762 0.89434 1.01644 1.17483 0.98368 0.91437 0.85074 1.45481 1.63062 1.05156 1.16722 1.23466 1.03938 0.97817 0.81329 1.24919 1.06236 0.79284 0.93425 1.87314 1.76612 1.35577 1.25536 1.18778 0.77255 0.82484 0.82533 1.90961 1.52648 1.61623 1.38955 1.21253 1.02838 1.01470 0.93460 0.90937 0.90164 0.93741 0.75175 0.75667 0.94164 0.93829 0.97023 0.97225 0.92528 0.83981 0.81498 0.81648 0.85486 0.85108 0.84534 0.84268 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.46 71.98 0.68 -2.96 16 2 C 0.20 5.50 2.77 44.24 0.12 5.62 16 3 H 0.06 2.11 7.44 -2.38 -0.02 2.09 16 4 N -0.72 -19.87 5.03 -461.40 -2.32 -22.19 16 5 C 0.70 26.31 8.53 179.05 1.53 27.84 16 6 O -0.64 -30.09 16.01 -4.00 -0.06 -30.16 16 7 N -0.73 -27.18 5.56 -478.53 -2.66 -29.84 16 8 C 0.16 7.31 5.61 86.38 0.48 7.80 16 9 C 0.02 1.27 5.09 29.85 0.15 1.42 16 10 C -0.55 -31.31 9.11 25.60 0.23 -31.08 16 11 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 12 C 0.01 0.45 5.46 84.65 0.46 0.91 16 13 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 14 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 C -0.07 -1.45 4.95 -19.88 -0.10 -1.55 16 19 C -0.14 -1.99 9.05 22.29 0.20 -1.79 16 20 C -0.08 -0.74 10.04 22.25 0.22 -0.52 16 21 C -0.14 -1.34 9.49 22.39 0.21 -1.13 16 22 C 0.17 2.95 6.63 38.14 0.25 3.20 16 23 N -0.57 -8.44 3.16 -759.81 -2.40 -10.84 16 24 C 0.05 0.07 6.49 86.63 0.56 0.64 16 25 C 0.03 0.05 8.23 72.35 0.60 0.65 16 26 O -0.34 -5.69 11.09 -47.45 -0.53 -6.22 16 27 C 0.63 14.52 8.77 129.91 1.14 15.66 16 28 O -0.55 -18.56 14.75 19.67 0.29 -18.27 16 29 C -0.17 -4.16 8.93 22.39 0.20 -3.96 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 8.27 6.88 -92.71 -0.64 7.64 16 34 H 0.41 12.61 8.49 -92.71 -0.79 11.82 16 35 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.14 1.56 6.91 -2.91 -0.02 1.54 16 41 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 42 H 0.17 0.24 7.31 -2.91 -0.02 0.22 16 43 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.13 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.14 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.14 -0.57 8.14 -2.38 -0.02 -0.59 16 47 H 0.12 3.94 5.22 -2.91 -0.02 3.93 16 Total: -1.00 -88.08 394.27 1.17 -86.91 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.41 Total: 17.75 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 6.95 Total: 20.74 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.10 Total: -117.20 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.30 Total: -54.65 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -88.08 1.17 -86.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273151131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.622 kcal (2) G-P(sol) polarization free energy of solvation -88.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds