Wall clock time and date at job start Wed Apr 1 2020 04:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45644 * 2 1 4 4 C 1.52817 * 109.33428 * 240.28881 * 2 1 3 5 5 C 1.51198 * 108.68701 * 159.97754 * 4 2 1 6 6 O 1.21279 * 119.76406 * 251.18253 * 5 4 2 7 7 N 1.33630 * 120.46235 * 71.20446 * 5 4 2 8 8 C 1.46917 * 120.62225 * 0.24115 * 7 5 4 9 9 C 1.53218 * 108.82332 * 288.06449 * 8 7 5 10 10 N 1.46073 * 109.72483 * 81.59841 * 9 8 7 11 11 C 1.34777 * 118.72984 * 116.15647 * 10 9 8 12 12 O 1.21583 * 119.99907 * 174.40596 * 11 10 9 13 13 N 1.34777 * 120.00347 * 354.41442 * 11 10 9 14 14 C 1.46497 * 119.99965 * 184.94048 * 13 11 10 15 15 C 1.50702 * 109.47095 * 179.97438 * 14 13 11 16 16 C 1.38302 * 119.93395 * 269.73039 * 15 14 13 17 17 C 1.38098 * 120.07022 * 179.72617 * 16 15 14 18 18 C 1.38879 * 119.92772 * 0.54193 * 17 16 15 19 19 O 1.35753 * 120.06822 * 179.75283 * 18 17 16 20 20 C 1.34828 * 117.00283 * 174.45530 * 19 18 17 21 21 H 1.08003 * 119.99700 * 5.05786 * 20 19 18 22 22 C 1.38654 * 119.99989 * 185.06258 * 20 19 18 23 23 N 1.31555 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99732 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47208 * 59.99881 * 24 22 20 26 26 H 1.48500 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47091 * 299.99737 * 24 22 20 28 28 C 1.38874 * 119.86514 * 359.72907 * 18 17 16 29 29 C 1.38102 * 119.92952 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47399 * 299.47265 * 1 2 3 31 31 H 1.09001 * 109.47437 * 59.47660 * 1 2 3 32 32 H 1.09000 * 109.47211 * 179.47599 * 1 2 3 33 33 H 1.09003 * 109.64196 * 40.18061 * 4 2 1 34 34 H 1.08995 * 109.51828 * 279.70125 * 4 2 1 35 35 H 0.97001 * 119.68464 * 180.26231 * 7 5 4 36 36 H 1.09005 * 109.57529 * 168.26747 * 8 7 5 37 37 H 1.08995 * 109.58455 * 47.86873 * 8 7 5 38 38 H 1.08994 * 109.42991 * 321.52134 * 9 8 7 39 39 H 1.09004 * 109.38886 * 201.64956 * 9 8 7 40 40 H 0.97003 * 119.99491 * 4.93536 * 13 11 10 41 41 H 1.09000 * 109.46980 * 60.00080 * 14 13 11 42 42 H 1.08999 * 109.47394 * 299.99895 * 14 13 11 43 43 H 1.08005 * 119.96100 * 359.97438 * 16 15 14 44 44 H 1.08000 * 120.03724 * 180.27476 * 17 16 15 45 45 H 0.97002 * 119.99923 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.03809 * 179.97438 * 28 18 17 47 47 H 1.08000 * 119.96558 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0359 -0.7147 -1.2524 5 6 3.4661 -0.2945 -1.5055 6 8 3.7237 0.4305 -2.4430 7 7 4.4482 -0.7167 -0.7037 8 6 4.1581 -1.5999 0.4339 9 6 3.4378 -0.7904 1.5171 10 7 2.0170 -0.6886 1.1936 11 6 1.1210 -1.2563 2.0251 12 8 -0.0696 -1.0996 1.8344 13 7 1.5446 -1.9976 3.0679 14 6 0.5734 -2.7032 3.9075 15 6 1.2999 -3.4529 4.9943 16 6 1.7068 -4.7572 4.7796 17 6 2.3777 -5.4449 5.7715 18 6 2.6338 -4.8293 6.9898 19 8 3.2887 -5.5044 7.9687 20 6 3.6062 -4.8132 9.0819 21 1 3.2685 -3.7941 9.1995 22 6 4.3663 -5.4107 10.0757 23 7 4.7782 -6.6519 9.9322 24 14 4.8068 -4.4528 11.6178 25 1 3.5631 -4.0404 12.3164 26 1 5.6187 -5.3103 12.5182 27 1 5.5883 -3.2464 11.2448 28 6 2.2190 -3.5214 7.2044 29 6 1.5539 -2.8369 6.2063 30 1 -0.3634 0.5056 0.8947 31 1 -0.3634 0.5219 -0.8852 32 1 -0.3633 -1.0276 -0.0094 33 1 1.4171 -0.4395 -2.1065 34 1 1.9931 -1.7929 -1.0988 35 1 5.3613 -0.4371 -0.8743 36 1 5.0905 -1.9977 0.8345 37 1 3.5198 -2.4203 0.1060 38 1 3.8700 0.2088 1.5706 39 1 3.5558 -1.2884 2.4796 40 1 2.4926 -2.0639 3.2624 41 1 0.0084 -3.4071 3.2963 42 1 -0.1098 -1.9826 4.3570 43 1 1.5031 -5.2369 3.8336 44 1 2.6992 -6.4619 5.6016 45 1 5.3103 -7.0697 10.6274 46 1 2.4162 -3.0401 8.1509 47 1 1.2313 -1.8197 6.3724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363291615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:47 Heat of formation + Delta-G solvation = -29.610783 kcal Electronic energy + Delta-G solvation = -30159.875778 eV Core-core repulsion = 25923.911884 eV Total energy + Delta-G solvation = -4235.963894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33167 -39.79881 -39.17115 -37.21180 -36.72931 -35.44661 -34.56782 -32.92110 -32.32568 -30.34673 -29.85596 -28.82680 -28.11333 -25.95838 -24.83720 -23.92154 -22.70198 -22.11447 -20.72463 -20.46334 -20.01651 -18.38272 -18.12302 -17.53420 -17.23487 -17.04475 -16.61291 -15.97076 -15.16948 -15.08255 -14.77600 -14.63492 -14.53174 -14.30250 -13.95558 -13.78942 -13.68791 -13.53465 -13.25799 -13.17160 -12.86361 -12.80521 -12.60727 -12.52028 -12.17941 -12.10912 -11.81514 -11.74407 -11.49504 -11.41206 -10.97904 -10.85125 -10.75096 -10.55019 -10.19928 -9.76404 -9.48996 -9.20839 -9.06965 -8.95068 -8.76389 -8.35212 -7.39318 -6.58227 -4.17328 1.93438 2.06500 2.23292 2.51318 2.84722 3.04955 3.05364 3.05517 3.09090 3.69876 3.85768 4.08687 4.39108 4.44890 4.46761 4.56179 4.63117 4.76887 4.86869 4.96246 5.05332 5.09934 5.16391 5.23306 5.32688 5.38419 5.47392 5.60177 5.62129 5.75411 5.83958 5.99841 6.05488 6.10266 6.29074 6.34240 6.44046 6.53436 6.60251 6.65344 6.74323 6.80428 6.90676 7.08633 7.21376 7.29325 7.64938 7.81547 7.83062 7.86176 8.48810 8.86958 9.54521 10.59035 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002059 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.727156 B =13595.284392 C =14271.579711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.171 3.829 3 H 0.073 0.927 4 C -0.155 4.155 5 C 0.518 3.482 6 O -0.550 6.550 7 N -0.725 5.725 8 C 0.089 3.911 9 C 0.089 3.911 10 N -0.629 5.629 11 C 0.698 3.302 12 O -0.579 6.579 13 N -0.739 5.739 14 C 0.197 3.803 15 C -0.216 4.216 16 C -0.054 4.054 17 C -0.196 4.196 18 C 0.160 3.840 19 O -0.172 6.172 20 C -0.394 4.394 21 H 0.093 0.907 22 C 0.041 3.959 23 N -0.859 5.859 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.237 4.237 29 C -0.050 4.050 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.394 0.606 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.272 0.728 46 H 0.128 0.872 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 10.119 -16.477 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.305 3.695 6 O -0.427 6.427 7 N -0.378 5.378 8 C -0.037 4.037 9 C -0.036 4.036 10 N -0.368 5.368 11 C 0.400 3.600 12 O -0.457 6.457 13 N -0.397 5.397 14 C 0.074 3.926 15 C -0.217 4.217 16 C -0.072 4.072 17 C -0.215 4.215 18 C 0.105 3.895 19 O -0.075 6.075 20 C -0.470 4.470 21 H 0.110 0.890 22 C -0.164 4.164 23 N -0.493 5.493 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.257 4.257 29 C -0.069 4.069 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.238 0.762 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.145 0.855 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.727 10.115 -16.897 19.881 hybrid contribution 1.296 0.425 1.035 1.712 sum -1.431 10.540 -15.862 19.098 Atomic orbital electron populations 1.22303 0.90905 1.04329 1.01059 1.20707 0.96949 0.94440 0.81257 0.90903 1.22506 0.92977 1.03125 1.01011 1.20649 0.88150 0.79446 0.81249 1.90763 1.84458 1.37158 1.30326 1.45940 1.10800 1.50906 1.30128 1.22251 1.02123 0.92796 0.86498 1.22055 0.81151 1.01805 0.98607 1.47084 1.05417 1.59184 1.25077 1.16166 0.85162 0.78722 0.79958 1.91016 1.14968 1.65465 1.74294 1.45962 1.10930 1.52082 1.30726 1.19835 0.89394 0.93976 0.89406 1.19216 1.10676 0.95821 0.96023 1.20524 0.95848 0.93424 0.97452 1.20217 1.07683 1.01155 0.92475 1.19445 0.90680 0.90499 0.88831 1.83978 1.63166 1.36884 1.23448 1.21307 1.33911 0.98120 0.93691 0.88957 1.25319 0.95763 0.96231 0.99108 1.70022 1.33277 1.11695 1.34274 0.85766 0.79000 0.78883 0.79734 1.19401 1.20188 1.19425 1.21160 1.07343 0.96047 1.01121 1.20651 0.95708 0.98130 0.92382 0.90156 0.94402 0.90222 0.87155 0.88690 0.76199 0.87896 0.89739 0.90175 0.88428 0.76852 0.91752 0.91673 0.86990 0.86410 0.91778 0.85454 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.42 37.16 0.28 -1.01 16 2 C 0.17 1.49 3.19 -68.21 -0.22 1.27 16 3 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 4 C -0.15 -1.23 4.97 -27.73 -0.14 -1.37 16 5 C 0.52 4.89 7.11 -11.25 -0.08 4.81 16 6 O -0.55 -7.45 17.91 5.56 0.10 -7.35 16 7 N -0.72 -4.67 5.30 -59.99 -0.32 -4.99 16 8 C 0.09 0.42 6.49 -3.70 -0.02 0.39 16 9 C 0.09 0.52 6.15 -4.16 -0.03 0.50 16 10 N -0.63 -5.42 2.78 -172.38 -0.48 -5.89 16 11 C 0.70 7.91 8.12 -86.92 -0.71 7.21 16 12 O -0.58 -8.22 11.29 5.29 0.06 -8.16 16 13 N -0.74 -7.87 5.44 -66.42 -0.36 -8.23 16 14 C 0.20 2.44 5.80 -5.19 -0.03 2.41 16 15 C -0.22 -3.13 5.25 -104.57 -0.55 -3.68 16 16 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 17 C -0.20 -3.69 9.99 -39.40 -0.39 -4.08 16 18 C 0.16 3.53 6.65 -39.11 -0.26 3.27 16 19 O -0.17 -4.61 9.76 0.05 0.00 -4.61 16 20 C -0.39 -10.38 9.49 30.89 0.29 -10.08 16 21 H 0.09 2.23 5.20 -52.48 -0.27 1.95 16 22 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 23 N -0.86 -24.04 13.67 55.48 0.76 -23.28 16 24 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.24 -4.64 9.17 -39.40 -0.36 -5.00 16 29 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 30 H 0.08 0.96 6.65 -51.93 -0.35 0.62 16 31 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.08 0.92 6.57 -51.93 -0.34 0.57 16 33 H 0.11 0.85 7.97 -51.93 -0.41 0.44 16 34 H 0.09 0.70 7.07 -51.93 -0.37 0.33 16 35 H 0.40 2.20 8.91 -40.82 -0.36 1.84 16 36 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.44 7.03 -51.93 -0.36 0.08 16 38 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.10 0.51 5.34 -51.93 -0.28 0.23 16 40 H 0.39 3.61 5.75 -40.82 -0.23 3.38 16 41 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 42 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 43 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.13 2.53 5.64 -52.49 -0.30 2.23 16 47 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -32.51 378.79 -8.83 -41.34 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.20 Total: 7.81 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.08 Total: -6.77 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.40 Total: -42.39 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.16 Total: -20.12 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.51 -8.83 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363291615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.729 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds