Wall clock time and date at job start Wed Apr 1 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.45644 * 2 1 4 4 C 1.52817 * 109.33428 * 240.28881 * 2 1 3 5 5 C 1.51198 * 108.68701 * 159.97754 * 4 2 1 6 6 O 1.21279 * 119.76406 * 251.18253 * 5 4 2 7 7 N 1.33630 * 120.46235 * 71.20446 * 5 4 2 8 8 C 1.46917 * 120.62225 * 0.24115 * 7 5 4 9 9 C 1.53218 * 108.82332 * 288.06449 * 8 7 5 10 10 N 1.46073 * 109.72483 * 81.59841 * 9 8 7 11 11 C 1.34777 * 118.72984 * 116.15647 * 10 9 8 12 12 O 1.21583 * 119.99907 * 174.40596 * 11 10 9 13 13 N 1.34777 * 120.00347 * 354.41442 * 11 10 9 14 14 C 1.46497 * 119.99965 * 184.94048 * 13 11 10 15 15 C 1.50702 * 109.47095 * 179.97438 * 14 13 11 16 16 C 1.38302 * 119.93395 * 269.73039 * 15 14 13 17 17 C 1.38098 * 120.07022 * 179.72617 * 16 15 14 18 18 C 1.38879 * 119.92772 * 0.54193 * 17 16 15 19 19 O 1.35753 * 120.06822 * 179.75283 * 18 17 16 20 20 C 1.34828 * 117.00283 * 174.45530 * 19 18 17 21 21 H 1.08003 * 119.99700 * 5.05786 * 20 19 18 22 22 C 1.38654 * 119.99989 * 185.06258 * 20 19 18 23 23 N 1.31555 * 120.00082 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99732 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47208 * 59.99881 * 24 22 20 26 26 H 1.48500 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47091 * 299.99737 * 24 22 20 28 28 C 1.38874 * 119.86514 * 359.72907 * 18 17 16 29 29 C 1.38102 * 119.92952 * 359.97438 * 28 18 17 30 30 H 1.09000 * 109.47399 * 299.47265 * 1 2 3 31 31 H 1.09001 * 109.47437 * 59.47660 * 1 2 3 32 32 H 1.09000 * 109.47211 * 179.47599 * 1 2 3 33 33 H 1.09003 * 109.64196 * 40.18061 * 4 2 1 34 34 H 1.08995 * 109.51828 * 279.70125 * 4 2 1 35 35 H 0.97001 * 119.68464 * 180.26231 * 7 5 4 36 36 H 1.09005 * 109.57529 * 168.26747 * 8 7 5 37 37 H 1.08995 * 109.58455 * 47.86873 * 8 7 5 38 38 H 1.08994 * 109.42991 * 321.52134 * 9 8 7 39 39 H 1.09004 * 109.38886 * 201.64956 * 9 8 7 40 40 H 0.97003 * 119.99491 * 4.93536 * 13 11 10 41 41 H 1.09000 * 109.46980 * 60.00080 * 14 13 11 42 42 H 1.08999 * 109.47394 * 299.99895 * 14 13 11 43 43 H 1.08005 * 119.96100 * 359.97438 * 16 15 14 44 44 H 1.08000 * 120.03724 * 180.27476 * 17 16 15 45 45 H 0.97002 * 119.99923 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.03809 * 179.97438 * 28 18 17 47 47 H 1.08000 * 119.96558 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0359 -0.7147 -1.2524 5 6 3.4661 -0.2945 -1.5055 6 8 3.7237 0.4305 -2.4430 7 7 4.4482 -0.7167 -0.7037 8 6 4.1581 -1.5999 0.4339 9 6 3.4378 -0.7904 1.5171 10 7 2.0170 -0.6886 1.1936 11 6 1.1210 -1.2563 2.0251 12 8 -0.0696 -1.0996 1.8344 13 7 1.5446 -1.9976 3.0679 14 6 0.5734 -2.7032 3.9075 15 6 1.2999 -3.4529 4.9943 16 6 1.7068 -4.7572 4.7796 17 6 2.3777 -5.4449 5.7715 18 6 2.6338 -4.8293 6.9898 19 8 3.2887 -5.5044 7.9687 20 6 3.6062 -4.8132 9.0819 21 1 3.2685 -3.7941 9.1995 22 6 4.3663 -5.4107 10.0757 23 7 4.7782 -6.6519 9.9322 24 14 4.8068 -4.4528 11.6178 25 1 3.5631 -4.0404 12.3164 26 1 5.6187 -5.3103 12.5182 27 1 5.5883 -3.2464 11.2448 28 6 2.2190 -3.5214 7.2044 29 6 1.5539 -2.8369 6.2063 30 1 -0.3634 0.5056 0.8947 31 1 -0.3634 0.5219 -0.8852 32 1 -0.3633 -1.0276 -0.0094 33 1 1.4171 -0.4395 -2.1065 34 1 1.9931 -1.7929 -1.0988 35 1 5.3613 -0.4371 -0.8743 36 1 5.0905 -1.9977 0.8345 37 1 3.5198 -2.4203 0.1060 38 1 3.8700 0.2088 1.5706 39 1 3.5558 -1.2884 2.4796 40 1 2.4926 -2.0639 3.2624 41 1 0.0084 -3.4071 3.2963 42 1 -0.1098 -1.9826 4.3570 43 1 1.5031 -5.2369 3.8336 44 1 2.6992 -6.4619 5.6016 45 1 5.3103 -7.0697 10.6274 46 1 2.4162 -3.0401 8.1509 47 1 1.2313 -1.8197 6.3724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363291615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:45 Heat of formation + Delta-G solvation = -52.750512 kcal Electronic energy + Delta-G solvation = -30160.879192 eV Core-core repulsion = 25923.911884 eV Total energy + Delta-G solvation = -4236.967308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09691 -40.85070 -40.48285 -38.60339 -37.60752 -36.35419 -35.38742 -34.34165 -33.59974 -31.79088 -31.08885 -29.46541 -28.88250 -27.60933 -26.19907 -24.49693 -23.61041 -23.54870 -22.07508 -21.16446 -20.82815 -19.84291 -19.15341 -18.76091 -18.22870 -17.80797 -17.48523 -16.77401 -16.40489 -16.32091 -15.99118 -15.88103 -15.64999 -15.48058 -15.14976 -14.99500 -14.89930 -14.35160 -14.29536 -14.09427 -14.01930 -13.82618 -13.59852 -13.41024 -13.29984 -13.08989 -12.95613 -12.76719 -12.48163 -12.45465 -12.35461 -12.21941 -12.15582 -12.11064 -11.17076 -10.97807 -10.79241 -10.44958 -10.07938 -9.98493 -9.76785 -9.49313 -8.97203 -8.46463 -6.14357 0.57090 0.62101 1.37194 1.45827 1.50898 1.52489 1.68205 2.17678 2.18462 2.29763 2.74970 2.99161 3.23690 3.45001 3.52356 3.84706 3.89785 3.91416 4.05124 4.06978 4.08868 4.21769 4.22308 4.25261 4.53127 4.54719 4.61022 4.63960 4.75321 4.80977 4.86207 4.89313 4.96846 5.09122 5.17258 5.18541 5.31061 5.33882 5.56595 5.57364 5.72094 5.73065 5.80349 5.82522 5.90982 6.03804 6.18704 6.20793 6.98614 7.00083 7.16775 7.62505 7.78561 8.76004 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.002059 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.727156 B =13595.284392 C =14271.579711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.174 3.826 3 H 0.073 0.927 4 C -0.146 4.146 5 C 0.516 3.484 6 O -0.597 6.597 7 N -0.713 5.713 8 C 0.091 3.909 9 C 0.085 3.915 10 N -0.623 5.623 11 C 0.697 3.303 12 O -0.608 6.608 13 N -0.732 5.732 14 C 0.204 3.796 15 C -0.180 4.180 16 C -0.040 4.040 17 C -0.204 4.204 18 C 0.122 3.878 19 O -0.229 6.229 20 C -0.412 4.412 21 H 0.103 0.897 22 C -0.021 4.021 23 N -0.919 5.919 24 Si 1.015 2.985 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.256 1.256 28 C -0.245 4.245 29 C -0.046 4.046 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.408 0.592 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.404 0.596 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.150 0.850 44 H 0.114 0.886 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 11.804 -17.849 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 H 0.091 0.909 4 C -0.187 4.187 5 C 0.304 3.696 6 O -0.479 6.479 7 N -0.364 5.364 8 C -0.034 4.034 9 C -0.039 4.039 10 N -0.361 5.361 11 C 0.399 3.601 12 O -0.489 6.489 13 N -0.391 5.391 14 C 0.081 3.919 15 C -0.181 4.181 16 C -0.059 4.059 17 C -0.223 4.223 18 C 0.071 3.929 19 O -0.136 6.136 20 C -0.488 4.488 21 H 0.121 0.879 22 C -0.219 4.219 23 N -0.557 5.557 24 Si 0.835 3.165 25 H -0.183 1.183 26 H -0.199 1.199 27 H -0.180 1.180 28 C -0.264 4.264 29 C -0.064 4.064 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.243 0.757 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.167 0.833 44 H 0.132 0.868 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.069 11.822 -18.296 21.998 hybrid contribution 1.206 0.037 1.112 1.641 sum -1.863 11.859 -17.184 20.962 Atomic orbital electron populations 1.22118 0.91707 1.03210 1.00593 1.20648 0.96188 0.94590 0.81645 0.90950 1.22410 0.92188 1.03522 1.00546 1.20864 0.89027 0.78858 0.80873 1.90746 1.85176 1.39460 1.32490 1.45936 1.10642 1.50096 1.29733 1.22399 1.03551 0.92047 0.85367 1.22262 0.79483 1.02624 0.99538 1.47092 1.06257 1.58302 1.24400 1.16230 0.85001 0.78741 0.80123 1.91025 1.16442 1.66453 1.74995 1.45669 1.11084 1.51919 1.30426 1.19695 0.89311 0.94060 0.88884 1.19502 1.07463 0.95314 0.95812 1.20879 0.93820 0.93425 0.97729 1.20458 1.08144 1.01439 0.92297 1.20015 0.91580 0.91950 0.89369 1.83947 1.66272 1.38556 1.24789 1.21766 1.34128 0.98719 0.94203 0.87948 1.26539 0.95594 0.97245 1.02527 1.70168 1.35730 1.13902 1.35854 0.84687 0.79029 0.77573 0.75231 1.18342 1.19887 1.18033 1.21232 1.07912 0.95389 1.01843 1.20932 0.94449 0.99206 0.91818 0.92284 0.93113 0.91640 0.87003 0.87656 0.75491 0.84867 0.89625 0.89628 0.87250 0.75730 0.90925 0.91655 0.83279 0.86757 0.91852 0.86435 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 7.42 71.98 0.53 -1.66 16 2 C 0.17 2.66 3.19 44.99 0.14 2.81 16 3 H 0.07 1.16 7.95 -2.39 -0.02 1.14 16 4 C -0.15 -2.01 4.97 29.95 0.15 -1.86 16 5 C 0.52 8.79 7.11 87.99 0.63 9.42 16 6 O -0.60 -15.72 17.91 -3.03 -0.05 -15.78 16 7 N -0.71 -7.24 5.30 -462.75 -2.45 -9.69 16 8 C 0.09 0.50 6.49 86.37 0.56 1.07 16 9 C 0.08 0.69 6.15 86.53 0.53 1.22 16 10 N -0.62 -8.87 2.78 -817.54 -2.27 -11.14 16 11 C 0.70 13.63 8.12 179.05 1.45 15.08 16 12 O -0.61 -15.89 11.29 -3.98 -0.04 -15.94 16 13 N -0.73 -12.60 5.44 -482.31 -2.62 -15.22 16 14 C 0.20 4.19 5.80 85.63 0.50 4.68 16 15 C -0.18 -4.51 5.25 -19.83 -0.10 -4.62 16 16 C -0.04 -1.09 9.69 22.25 0.22 -0.88 16 17 C -0.20 -7.56 9.99 22.39 0.22 -7.33 16 18 C 0.12 5.48 6.65 22.58 0.15 5.63 16 19 O -0.23 -12.95 9.76 -22.75 -0.22 -13.17 16 20 C -0.41 -22.67 9.49 67.92 0.64 -22.02 16 21 H 0.10 5.12 5.20 -2.91 -0.02 5.10 16 22 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 23 N -0.92 -54.25 13.67 21.61 0.30 -53.95 16 24 Si 1.02 40.81 29.55 68.60 2.03 42.83 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 27 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 28 C -0.24 -9.45 9.17 22.39 0.21 -9.24 16 29 C -0.05 -1.32 9.69 22.25 0.22 -1.11 16 30 H 0.06 1.35 6.65 -2.39 -0.02 1.34 16 31 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 32 H 0.06 1.41 6.57 -2.39 -0.02 1.39 16 33 H 0.11 1.54 7.97 -2.39 -0.02 1.52 16 34 H 0.11 1.25 7.07 -2.39 -0.02 1.23 16 35 H 0.41 3.43 8.91 -92.71 -0.83 2.60 16 36 H 0.13 0.04 8.14 -2.38 -0.02 0.02 16 37 H 0.09 0.55 7.03 -2.39 -0.02 0.53 16 38 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 39 H 0.11 0.66 5.34 -2.38 -0.01 0.65 16 40 H 0.40 5.55 5.75 -92.71 -0.53 5.01 16 41 H 0.07 1.47 8.08 -2.39 -0.02 1.45 16 42 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 43 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.12 4.71 5.64 -2.91 -0.02 4.70 16 47 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -76.37 378.79 0.84 -75.53 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.32 Total: 26.03 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 6.51 Total: -9.50 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -7.05 Total: -90.01 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -0.32 Total: -44.89 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -76.37 0.84 -75.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363291615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.779 kcal (2) G-P(sol) polarization free energy of solvation -76.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds