Wall clock time and date at job start Wed Apr 1 2020 05:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.51122 * 2 1 4 4 C 1.53274 * 109.51452 * 120.09767 * 2 1 3 5 5 N 1.47154 * 108.52806 * 172.75039 * 4 2 1 6 6 S 1.65599 * 121.05327 * 128.92331 * 5 4 2 7 7 O 1.42101 * 104.27593 * 333.93020 * 6 5 4 8 8 O 1.42104 * 104.28053 * 206.07105 * 6 5 4 9 9 C 1.81405 * 104.45181 * 89.99908 * 6 5 4 10 10 C 1.52998 * 109.47349 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.46671 * 60.00103 * 10 9 6 12 12 C 1.52998 * 109.47148 * 300.00122 * 10 9 6 13 13 C 1.50702 * 109.46957 * 179.97438 * 10 9 6 14 14 H 1.08001 * 119.99952 * 25.77656 * 13 10 9 15 15 C 1.37870 * 119.99932 * 205.49684 * 13 10 9 16 16 N 1.31515 * 120.00483 * 166.19162 * 15 13 10 17 17 Si 1.86810 * 120.00160 * 346.19131 * 15 13 10 18 18 H 1.48497 * 109.47080 * 95.85413 * 17 15 13 19 19 H 1.48494 * 109.46954 * 215.85415 * 17 15 13 20 20 H 1.48501 * 109.46705 * 335.85354 * 17 15 13 21 21 C 1.47281 * 117.89546 * 309.19344 * 5 4 2 22 22 C 1.52238 * 108.61467 * 49.25369 * 21 5 4 23 23 C 1.53954 * 110.25485 * 186.88625 * 22 21 5 24 24 C 1.54608 * 103.88112 * 241.91763 * 23 22 21 25 25 O 1.44481 * 104.81903 * 336.10910 * 24 23 22 26 26 C 1.44551 * 105.36318 * 40.15927 * 25 24 23 27 27 O 1.42216 * 110.91112 * 309.54932 * 22 21 5 28 28 H 1.08994 * 109.47103 * 299.90370 * 1 2 3 29 29 H 1.09003 * 109.47162 * 59.90726 * 1 2 3 30 30 H 1.09004 * 109.46887 * 179.90200 * 1 2 3 31 31 H 1.09007 * 109.62674 * 53.03880 * 4 2 1 32 32 H 1.09001 * 109.62603 * 292.46681 * 4 2 1 33 33 H 1.09002 * 109.47046 * 60.00088 * 9 6 5 34 34 H 1.09003 * 109.46972 * 300.00453 * 9 6 5 35 35 H 1.09001 * 109.47258 * 195.08663 * 11 10 9 36 36 H 1.08999 * 109.47801 * 315.09038 * 11 10 9 37 37 H 1.09005 * 109.47199 * 75.09317 * 11 10 9 38 38 H 1.08998 * 109.47216 * 308.27784 * 12 10 9 39 39 H 1.08997 * 109.47125 * 68.27646 * 12 10 9 40 40 H 1.08999 * 109.46899 * 188.27603 * 12 10 9 41 41 H 0.96997 * 120.00637 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.67832 * 169.03270 * 21 5 4 43 43 H 1.08996 * 109.68575 * 289.58087 * 21 5 4 44 44 H 1.09004 * 110.54524 * 0.50959 * 23 22 21 45 45 H 1.08996 * 110.55165 * 123.31105 * 23 22 21 46 46 H 1.09004 * 110.37215 * 94.94534 * 24 23 22 47 47 H 1.08998 * 110.36908 * 217.27676 * 24 23 22 48 48 H 1.09007 * 110.38814 * 201.20753 * 26 25 24 49 49 H 1.09001 * 110.39298 * 78.81576 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 1.2499 5 7 3.5028 -0.8660 1.1429 6 16 4.4996 -0.3931 2.3779 7 8 3.7614 0.6124 3.0586 8 8 5.7317 -0.0906 1.7377 9 6 4.6676 -1.8717 3.4155 10 6 5.5775 -1.5592 4.6051 11 6 4.9670 -0.4242 5.4297 12 6 6.9561 -1.1348 4.0951 13 6 5.7165 -2.7874 5.4673 14 1 5.5863 -3.7684 5.0348 15 6 6.0156 -2.6588 6.8071 16 7 5.8723 -3.6870 7.6145 17 14 6.6246 -1.0242 7.4755 18 1 5.4811 -0.2633 8.0398 19 1 7.6302 -1.2687 8.5405 20 1 7.2466 -0.2413 6.3776 21 6 4.0508 -1.4358 -0.0998 22 6 3.4248 -0.7119 -1.2837 23 6 3.8388 -1.3898 -2.6025 24 6 4.6172 -0.2878 -3.3576 25 8 4.1272 0.9546 -2.8062 26 6 3.9905 0.7162 -1.3871 27 8 2.0079 -0.6773 -1.1662 28 1 -0.3633 0.5123 0.8908 29 1 -0.3634 0.5153 -0.8892 30 1 -0.3633 -1.0277 -0.0018 31 1 1.5824 -1.7108 1.3155 32 1 1.7945 -0.1424 2.1376 33 1 5.1029 -2.6802 2.8281 34 1 3.6853 -2.1743 3.7784 35 1 5.7203 -0.0210 6.1065 36 1 4.6195 0.3640 4.7618 37 1 4.1263 -0.8070 6.0084 38 1 7.3276 -1.8785 3.3902 39 1 6.8774 -0.1689 3.5962 40 1 7.6455 -1.0545 4.9356 41 1 6.0823 -3.5965 8.5571 42 1 5.1324 -1.3020 -0.1192 43 1 3.8108 -2.4977 -0.1538 44 1 4.4831 -2.2469 -2.4062 45 1 2.9588 -1.6934 -3.1694 46 1 5.6875 -0.3873 -3.1765 47 1 4.4059 -0.3382 -4.4257 48 1 3.2966 1.4323 -0.9468 49 1 4.9620 0.7763 -0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:19 Heat of formation + Delta-G solvation = -129.843595 kcal Electronic energy + Delta-G solvation = -31623.431883 eV Core-core repulsion = 27486.272768 eV Total energy + Delta-G solvation = -4137.159115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86435 -38.11939 -36.95460 -36.80442 -35.66311 -34.98097 -33.61244 -32.00848 -30.87423 -29.18055 -27.54810 -26.91084 -26.49511 -25.14718 -24.87983 -23.61994 -21.67489 -20.13728 -19.78552 -18.73902 -17.81468 -17.44204 -16.65998 -16.27889 -16.11233 -15.96156 -15.59434 -15.43017 -15.17398 -15.03672 -14.27390 -14.10581 -14.00523 -13.57238 -13.32257 -13.15504 -12.96861 -12.85503 -12.71863 -12.55340 -12.45448 -12.26133 -11.91653 -11.81325 -11.80814 -11.62661 -11.58183 -11.45952 -11.33235 -11.15866 -11.07283 -10.83751 -10.56194 -10.39262 -10.31147 -10.16774 -9.95169 -9.85452 -9.15660 -8.88558 -8.70518 -8.56297 -6.25428 -4.22217 0.50882 2.72272 3.22350 3.26546 3.29073 3.35715 3.66877 4.05731 4.15183 4.27339 4.28675 4.42106 4.52283 4.57067 4.73659 4.79061 4.88172 4.95739 5.02415 5.06577 5.14453 5.26279 5.33978 5.36149 5.40307 5.44834 5.45171 5.50785 5.55557 5.59612 5.67569 5.74820 5.86383 5.92707 5.96374 6.09839 6.23455 6.30669 6.38075 6.40528 6.45519 6.63326 6.82350 7.00613 7.05384 7.26751 7.56002 8.32716 8.77478 9.38730 10.87087 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003478 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.115591 B = 8048.811912 C = 8493.409223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.071 3.929 3 H 0.067 0.933 4 C 0.087 3.913 5 N -1.011 6.011 6 S 2.582 3.418 7 O -0.959 6.959 8 O -0.959 6.959 9 C -0.569 4.569 10 C 0.055 3.945 11 C -0.204 4.204 12 C -0.172 4.172 13 C -0.507 4.507 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.887 5.887 17 Si 0.884 3.116 18 H -0.284 1.284 19 H -0.302 1.302 20 H -0.251 1.251 21 C 0.098 3.902 22 C 0.081 3.919 23 C -0.141 4.141 24 C 0.044 3.956 25 O -0.370 6.370 26 C 0.017 3.983 27 O -0.356 6.356 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.267 0.733 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.065 0.935 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 4.746 -18.895 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.039 4.039 5 N -0.847 5.847 6 S 2.683 3.317 7 O -0.949 6.949 8 O -0.949 6.949 9 C -0.703 4.703 10 C 0.052 3.948 11 C -0.261 4.261 12 C -0.229 4.229 13 C -0.546 4.546 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.211 1.211 19 H -0.230 1.230 20 H -0.177 1.177 21 C -0.028 4.028 22 C 0.040 3.960 23 C -0.179 4.179 24 C -0.033 4.033 25 O -0.288 6.288 26 C -0.060 4.060 27 O -0.275 6.275 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.083 0.917 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.387 5.666 -18.884 21.054 hybrid contribution 0.345 -0.088 1.034 1.094 sum -7.042 5.579 -17.850 19.983 Atomic orbital electron populations 1.21732 0.91930 1.03354 1.03021 1.22525 0.95540 0.95768 0.84924 0.91501 1.22190 0.79604 1.02141 0.99952 1.58127 1.16676 1.80151 1.29742 1.06105 0.73369 0.78237 0.74034 1.93506 1.71966 1.55711 1.73731 1.93538 1.43561 1.83823 1.74015 1.30480 1.10195 1.17815 1.11798 1.18226 0.89746 0.96375 0.90443 1.23031 1.01963 0.98964 1.02106 1.22634 0.99707 0.99256 1.01325 1.20651 1.49762 0.91456 0.92736 0.90414 1.24998 0.94464 0.96586 0.96553 1.69929 1.46555 1.31278 1.04609 0.87185 0.78927 0.84306 0.77945 1.21068 1.23045 1.17733 1.21971 0.99838 0.98081 0.82876 1.22523 0.82774 0.95388 0.95364 1.22911 1.01696 0.99050 0.94238 1.23497 0.97808 0.83066 0.98942 1.89163 1.86726 1.33089 1.19834 1.24118 1.01803 0.96652 0.83394 1.87880 1.19018 1.77440 1.43139 0.90441 0.91428 0.91406 0.90316 0.87568 0.85807 0.85481 0.92478 0.91760 0.91046 0.92540 0.94539 0.91344 0.92354 0.87431 0.90118 0.88880 0.88794 0.91695 0.88671 0.88575 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.57 37.16 0.36 -0.81 16 2 C 0.07 0.76 3.16 -26.59 -0.08 0.68 16 3 H 0.07 0.75 6.13 -51.93 -0.32 0.43 16 4 C 0.09 0.98 5.94 -3.54 -0.02 0.96 16 5 N -1.01 -13.16 3.17 -113.57 -0.36 -13.52 16 6 S 2.58 43.12 4.57 -107.50 -0.49 42.63 16 7 O -0.96 -17.89 13.99 -57.54 -0.80 -18.70 16 8 O -0.96 -17.50 14.41 -57.54 -0.83 -18.33 16 9 C -0.57 -10.23 5.15 37.16 0.19 -10.04 16 10 C 0.06 1.23 0.52 -155.66 -0.08 1.15 16 11 C -0.20 -4.57 6.81 37.16 0.25 -4.32 16 12 C -0.17 -3.69 7.25 37.16 0.27 -3.42 16 13 C -0.51 -13.40 8.55 -34.44 -0.29 -13.70 16 14 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 15 C 0.08 2.14 5.30 -17.82 -0.09 2.05 16 16 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 17 Si 0.88 21.44 22.87 -169.99 -3.89 17.55 16 18 H -0.28 -6.78 7.10 56.52 0.40 -6.38 16 19 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.25 -5.69 4.48 56.52 0.25 -5.44 16 21 C 0.10 1.11 5.05 -4.00 -0.02 1.09 16 22 C 0.08 0.90 1.05 -90.02 -0.09 0.80 16 23 C -0.14 -1.20 6.53 -25.39 -0.17 -1.37 16 24 C 0.04 0.39 7.65 38.00 0.29 0.68 16 25 O -0.37 -4.64 11.66 -35.23 -0.41 -5.06 16 26 C 0.02 0.21 6.60 37.65 0.25 0.46 16 27 O -0.36 -4.13 9.82 -35.23 -0.35 -4.48 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.11 1.21 6.89 -51.93 -0.36 0.85 16 33 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.13 2.13 8.14 -51.92 -0.42 1.71 16 35 H 0.06 1.30 2.58 -51.93 -0.13 1.17 16 36 H 0.06 1.34 4.58 -51.93 -0.24 1.10 16 37 H 0.07 1.60 7.81 -51.93 -0.41 1.19 16 38 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 39 H 0.04 0.74 6.07 -51.93 -0.32 0.42 16 40 H 0.07 1.51 5.20 -51.93 -0.27 1.24 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.11 1.21 6.61 -51.93 -0.34 0.86 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.09 0.60 7.71 -51.93 -0.40 0.20 16 45 H 0.09 0.77 7.99 -51.93 -0.41 0.36 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.10 1.21 5.92 -51.93 -0.31 0.90 16 49 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -32.82 365.16 -7.93 -40.75 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.83 Total: 4.65 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 0.75 Total: -25.77 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.41 Total: -38.76 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -2.39 Total: -46.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -3.89 Total: 17.55 kcal Atomic # 16 Polarization: 43.12 SS G_CDS: -0.49 Total: 42.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.82 -7.93 -40.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.091 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds