Wall clock time and date at job start Wed Apr 1 2020 05:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.51122 * 2 1 4 4 C 1.53274 * 109.51452 * 120.09767 * 2 1 3 5 5 N 1.47154 * 108.52806 * 172.75039 * 4 2 1 6 6 S 1.65599 * 121.05327 * 128.92331 * 5 4 2 7 7 O 1.42101 * 104.27593 * 333.93020 * 6 5 4 8 8 O 1.42104 * 104.28053 * 206.07105 * 6 5 4 9 9 C 1.81405 * 104.45181 * 89.99908 * 6 5 4 10 10 C 1.52998 * 109.47349 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.46671 * 60.00103 * 10 9 6 12 12 C 1.52998 * 109.47148 * 300.00122 * 10 9 6 13 13 C 1.50702 * 109.46957 * 179.97438 * 10 9 6 14 14 H 1.08001 * 119.99952 * 25.77656 * 13 10 9 15 15 C 1.37870 * 119.99932 * 205.49684 * 13 10 9 16 16 N 1.31515 * 120.00483 * 166.19162 * 15 13 10 17 17 Si 1.86810 * 120.00160 * 346.19131 * 15 13 10 18 18 H 1.48497 * 109.47080 * 95.85413 * 17 15 13 19 19 H 1.48494 * 109.46954 * 215.85415 * 17 15 13 20 20 H 1.48501 * 109.46705 * 335.85354 * 17 15 13 21 21 C 1.47281 * 117.89546 * 309.19344 * 5 4 2 22 22 C 1.52238 * 108.61467 * 49.25369 * 21 5 4 23 23 C 1.53954 * 110.25485 * 186.88625 * 22 21 5 24 24 C 1.54608 * 103.88112 * 241.91763 * 23 22 21 25 25 O 1.44481 * 104.81903 * 336.10910 * 24 23 22 26 26 C 1.44551 * 105.36318 * 40.15927 * 25 24 23 27 27 O 1.42216 * 110.91112 * 309.54932 * 22 21 5 28 28 H 1.08994 * 109.47103 * 299.90370 * 1 2 3 29 29 H 1.09003 * 109.47162 * 59.90726 * 1 2 3 30 30 H 1.09004 * 109.46887 * 179.90200 * 1 2 3 31 31 H 1.09007 * 109.62674 * 53.03880 * 4 2 1 32 32 H 1.09001 * 109.62603 * 292.46681 * 4 2 1 33 33 H 1.09002 * 109.47046 * 60.00088 * 9 6 5 34 34 H 1.09003 * 109.46972 * 300.00453 * 9 6 5 35 35 H 1.09001 * 109.47258 * 195.08663 * 11 10 9 36 36 H 1.08999 * 109.47801 * 315.09038 * 11 10 9 37 37 H 1.09005 * 109.47199 * 75.09317 * 11 10 9 38 38 H 1.08998 * 109.47216 * 308.27784 * 12 10 9 39 39 H 1.08997 * 109.47125 * 68.27646 * 12 10 9 40 40 H 1.08999 * 109.46899 * 188.27603 * 12 10 9 41 41 H 0.96997 * 120.00637 * 180.02562 * 16 15 13 42 42 H 1.09005 * 109.67832 * 169.03270 * 21 5 4 43 43 H 1.08996 * 109.68575 * 289.58087 * 21 5 4 44 44 H 1.09004 * 110.54524 * 0.50959 * 23 22 21 45 45 H 1.08996 * 110.55165 * 123.31105 * 23 22 21 46 46 H 1.09004 * 110.37215 * 94.94534 * 24 23 22 47 47 H 1.08998 * 110.36908 * 217.27676 * 24 23 22 48 48 H 1.09007 * 110.38814 * 201.20753 * 26 25 24 49 49 H 1.09001 * 110.39298 * 78.81576 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7245 1.2499 5 7 3.5028 -0.8660 1.1429 6 16 4.4996 -0.3931 2.3779 7 8 3.7614 0.6124 3.0586 8 8 5.7317 -0.0906 1.7377 9 6 4.6676 -1.8717 3.4155 10 6 5.5775 -1.5592 4.6051 11 6 4.9670 -0.4242 5.4297 12 6 6.9561 -1.1348 4.0951 13 6 5.7165 -2.7874 5.4673 14 1 5.5863 -3.7684 5.0348 15 6 6.0156 -2.6588 6.8071 16 7 5.8723 -3.6870 7.6145 17 14 6.6246 -1.0242 7.4755 18 1 5.4811 -0.2633 8.0398 19 1 7.6302 -1.2687 8.5405 20 1 7.2466 -0.2413 6.3776 21 6 4.0508 -1.4358 -0.0998 22 6 3.4248 -0.7119 -1.2837 23 6 3.8388 -1.3898 -2.6025 24 6 4.6172 -0.2878 -3.3576 25 8 4.1272 0.9546 -2.8062 26 6 3.9905 0.7162 -1.3871 27 8 2.0079 -0.6773 -1.1662 28 1 -0.3633 0.5123 0.8908 29 1 -0.3634 0.5153 -0.8892 30 1 -0.3633 -1.0277 -0.0018 31 1 1.5824 -1.7108 1.3155 32 1 1.7945 -0.1424 2.1376 33 1 5.1029 -2.6802 2.8281 34 1 3.6853 -2.1743 3.7784 35 1 5.7203 -0.0210 6.1065 36 1 4.6195 0.3640 4.7618 37 1 4.1263 -0.8070 6.0084 38 1 7.3276 -1.8785 3.3902 39 1 6.8774 -0.1689 3.5962 40 1 7.6455 -1.0545 4.9356 41 1 6.0823 -3.5965 8.5571 42 1 5.1324 -1.3020 -0.1192 43 1 3.8108 -2.4977 -0.1538 44 1 4.4831 -2.2469 -2.4062 45 1 2.9588 -1.6934 -3.1694 46 1 5.6875 -0.3873 -3.1765 47 1 4.4059 -0.3382 -4.4257 48 1 3.2966 1.4323 -0.9468 49 1 4.9620 0.7763 -0.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:18 Heat of formation + Delta-G solvation = -154.933157 kcal Electronic energy + Delta-G solvation = -31624.519848 eV Core-core repulsion = 27486.272768 eV Total energy + Delta-G solvation = -4138.247080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.70464 -38.97694 -38.57621 -38.30841 -37.06676 -35.96647 -34.41930 -34.06465 -31.61823 -30.01261 -29.07363 -28.21500 -27.76287 -27.13309 -25.88026 -24.38311 -22.41820 -21.55688 -21.01750 -19.93441 -19.10029 -18.31530 -18.15836 -17.64219 -17.47101 -17.08486 -16.77557 -16.67811 -16.27466 -16.10281 -15.36584 -15.29126 -15.09021 -14.91651 -14.82276 -14.61124 -14.36854 -14.08436 -13.88327 -13.71190 -13.40645 -13.27702 -13.18633 -13.14431 -12.89561 -12.74102 -12.67262 -12.61678 -12.57392 -12.53250 -12.32517 -12.11343 -12.07569 -11.95905 -11.73342 -11.40451 -11.25284 -10.97300 -10.75110 -10.62273 -10.56970 -9.80359 -8.37212 -6.36127 -0.82387 1.28342 1.33997 1.41823 1.54521 2.27211 2.47978 2.70383 2.87291 2.97528 3.05398 3.33708 3.58458 3.62518 3.65099 3.77922 3.94691 3.96730 4.09426 4.15375 4.17800 4.21003 4.28297 4.32986 4.40649 4.44757 4.51481 4.59968 4.62588 4.66072 4.73619 4.75000 4.80111 4.81960 4.85386 4.88764 4.98772 5.04801 5.08626 5.14519 5.28465 5.32299 5.38798 5.55209 5.59546 5.66382 6.18422 6.23462 6.66124 7.27995 8.78948 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.003478 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.115591 B = 8048.811912 C = 8493.409223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.057 0.943 4 C 0.079 3.921 5 N -1.005 6.005 6 S 2.607 3.393 7 O -0.978 6.978 8 O -0.973 6.973 9 C -0.580 4.580 10 C 0.045 3.955 11 C -0.209 4.209 12 C -0.174 4.174 13 C -0.503 4.503 14 H 0.049 0.951 15 C 0.027 3.973 16 N -0.935 5.935 17 Si 0.925 3.075 18 H -0.278 1.278 19 H -0.307 1.307 20 H -0.226 1.226 21 C 0.090 3.910 22 C 0.080 3.920 23 C -0.135 4.135 24 C 0.036 3.964 25 O -0.393 6.393 26 C 0.013 3.987 27 O -0.361 6.361 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.267 0.733 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.087 0.913 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.182 5.231 -20.969 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.075 0.925 4 C -0.046 4.046 5 N -0.843 5.843 6 S 2.706 3.294 7 O -0.969 6.969 8 O -0.964 6.964 9 C -0.712 4.712 10 C 0.042 3.958 11 C -0.265 4.265 12 C -0.232 4.232 13 C -0.541 4.541 14 H 0.067 0.933 15 C -0.172 4.172 16 N -0.574 5.574 17 Si 0.755 3.245 18 H -0.205 1.205 19 H -0.236 1.236 20 H -0.151 1.151 21 C -0.035 4.035 22 C 0.038 3.962 23 C -0.173 4.173 24 C -0.040 4.040 25 O -0.312 6.312 26 C -0.064 4.064 27 O -0.280 6.280 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.132 0.868 48 H 0.105 0.895 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.973 6.151 -20.961 23.254 hybrid contribution 0.471 -0.275 1.523 1.617 sum -7.502 5.875 -19.438 21.648 Atomic orbital electron populations 1.21747 0.90005 1.04100 1.03786 1.22633 0.97027 0.95048 0.84385 0.92542 1.22446 0.78380 1.03446 1.00306 1.57806 1.17174 1.80141 1.29152 1.05081 0.73149 0.77204 0.73972 1.93472 1.72379 1.56231 1.74797 1.93517 1.44864 1.83807 1.74177 1.30462 1.09840 1.19820 1.11089 1.18216 0.91425 0.94548 0.91573 1.23065 1.01652 0.99450 1.02379 1.22617 0.98789 1.00391 1.01389 1.20906 1.48104 0.92055 0.93083 0.93301 1.25690 0.94960 0.99386 0.97169 1.70041 1.48952 1.33444 1.04993 0.86507 0.78701 0.81367 0.77925 1.20491 1.23579 1.15102 1.22259 0.99971 0.99412 0.81839 1.22617 0.82526 0.94659 0.96432 1.22968 1.02252 0.99398 0.92685 1.23767 0.98419 0.81849 0.99987 1.89134 1.87095 1.35172 1.19814 1.24100 1.01117 0.97628 0.83526 1.87887 1.19275 1.77382 1.43463 0.89199 0.91199 0.90639 0.88299 0.87762 0.84193 0.84635 0.92887 0.90133 0.91744 0.91320 0.93248 0.92239 0.92415 0.87370 0.87646 0.86490 0.88281 0.90736 0.86788 0.89520 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.57 71.98 0.69 -1.26 16 2 C 0.07 1.32 3.16 30.69 0.10 1.42 16 3 H 0.06 1.21 6.13 -2.39 -0.01 1.20 16 4 C 0.08 1.62 5.94 86.35 0.51 2.13 16 5 N -1.00 -23.91 3.17 -513.22 -1.63 -25.54 16 6 S 2.61 82.08 4.57 -56.49 -0.26 81.82 16 7 O -0.98 -34.89 13.99 -127.65 -1.79 -36.68 16 8 O -0.97 -33.61 14.41 -127.65 -1.84 -35.45 16 9 C -0.58 -19.93 5.15 71.98 0.37 -19.56 16 10 C 0.04 1.96 0.52 -52.93 -0.03 1.93 16 11 C -0.21 -9.08 6.81 71.98 0.49 -8.59 16 12 C -0.17 -7.19 7.25 71.98 0.52 -6.67 16 13 C -0.50 -26.72 8.55 25.60 0.22 -26.50 16 14 H 0.05 2.81 8.05 -2.91 -0.02 2.79 16 15 C 0.03 1.50 5.30 84.65 0.45 1.95 16 16 N -0.94 -56.21 13.96 21.44 0.30 -55.91 16 17 Si 0.92 43.81 22.87 68.60 1.57 45.38 16 18 H -0.28 -12.85 7.10 99.48 0.71 -12.14 16 19 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 20 H -0.23 -9.73 4.48 99.48 0.45 -9.28 16 21 C 0.09 1.79 5.05 85.98 0.43 2.22 16 22 C 0.08 1.58 1.05 -10.40 -0.01 1.57 16 23 C -0.14 -1.90 6.53 31.46 0.21 -1.69 16 24 C 0.04 0.55 7.65 72.53 0.55 1.11 16 25 O -0.39 -9.41 11.66 -148.98 -1.74 -11.15 16 26 C 0.01 0.32 6.60 72.30 0.48 0.80 16 27 O -0.36 -7.55 9.82 -148.98 -1.46 -9.02 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 32 H 0.10 2.18 6.89 -2.39 -0.02 2.16 16 33 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.14 4.36 8.14 -2.39 -0.02 4.34 16 35 H 0.05 2.32 2.58 -2.39 -0.01 2.32 16 36 H 0.08 3.21 4.58 -2.39 -0.01 3.20 16 37 H 0.06 2.84 7.81 -2.38 -0.02 2.82 16 38 H 0.07 2.61 8.13 -2.39 -0.02 2.59 16 39 H 0.05 1.90 6.07 -2.39 -0.01 1.88 16 40 H 0.06 2.52 5.20 -2.39 -0.01 2.51 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.11 2.15 6.61 -2.38 -0.02 2.14 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.12 1.07 7.71 -2.39 -0.02 1.05 16 45 H 0.10 1.32 7.99 -2.39 -0.02 1.30 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.09 2.16 5.92 -2.38 -0.01 2.14 16 49 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 Total: -1.00 -70.82 365.16 -1.17 -71.98 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.69 Total: 25.70 kcal Atomic # 6 Polarization: -56.13 SS G_CDS: 4.98 Total: -51.15 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.33 Total: -81.45 kcal Atomic # 8 Polarization: -85.46 SS G_CDS: -6.83 Total: -92.29 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.57 Total: 45.38 kcal Atomic # 16 Polarization: 82.08 SS G_CDS: -0.26 Total: 81.82 kcal Total: -70.82 -1.17 -71.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.949 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds