Wall clock time and date at job start Wed Apr 1 2020 04:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34225 * 117.00294 * 2 1 4 4 O 1.20832 * 120.00112 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00468 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.69860 * 353.22961 * 5 3 2 7 7 C 1.53621 * 109.66528 * 113.82439 * 5 3 2 8 8 C 1.53046 * 109.23763 * 174.54966 * 7 5 3 9 9 H 1.08999 * 109.44511 * 178.49742 * 8 7 5 10 10 C 1.52997 * 109.45948 * 58.53611 * 8 7 5 11 11 C 1.53038 * 109.53929 * 298.50961 * 8 7 5 12 12 C 1.53191 * 109.31114 * 61.36891 * 11 8 7 13 13 N 1.46924 * 109.58560 * 232.88106 * 5 3 2 14 14 S 1.65597 * 120.63370 * 6.62142 * 13 5 3 15 15 O 1.42096 * 104.28056 * 157.02325 * 14 13 5 16 16 O 1.42097 * 104.27837 * 29.16557 * 14 13 5 17 17 C 1.81397 * 104.45167 * 273.09687 * 14 13 5 18 18 C 1.52996 * 109.47565 * 179.97438 * 17 14 13 19 19 C 1.52998 * 109.47165 * 300.00194 * 18 17 14 20 20 C 1.53006 * 109.47243 * 59.99964 * 18 17 14 21 21 C 1.50695 * 109.47781 * 179.97438 * 18 17 14 22 22 H 1.08011 * 119.99635 * 0.55084 * 21 18 17 23 23 C 1.37875 * 120.00828 * 180.54691 * 21 18 17 24 24 N 1.31508 * 120.00478 * 195.41884 * 23 21 18 25 25 Si 1.86800 * 119.99343 * 15.41959 * 23 21 18 26 26 H 1.48504 * 109.47264 * 84.95427 * 25 23 21 27 27 H 1.48505 * 109.46989 * 204.94948 * 25 23 21 28 28 H 1.48497 * 109.47638 * 324.94928 * 25 23 21 29 29 H 1.08997 * 109.47617 * 59.99542 * 1 2 3 30 30 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.47007 * 299.99398 * 1 2 3 32 32 H 1.09000 * 109.63223 * 54.56211 * 7 5 3 33 33 H 1.08992 * 109.45835 * 294.43210 * 7 5 3 34 34 H 1.09000 * 109.47216 * 299.92677 * 10 8 7 35 35 H 1.08994 * 109.47778 * 59.92753 * 10 8 7 36 36 H 1.09002 * 109.47014 * 179.97438 * 10 8 7 37 37 H 1.09004 * 109.49878 * 301.41539 * 11 8 7 38 38 H 1.09002 * 109.49497 * 181.32048 * 11 8 7 39 39 H 1.09000 * 109.58466 * 185.57521 * 12 11 8 40 40 H 1.08995 * 109.70278 * 65.22126 * 12 11 8 41 41 H 1.09005 * 109.47630 * 59.99644 * 17 14 13 42 42 H 1.09002 * 109.47254 * 299.99816 * 17 14 13 43 43 H 1.09003 * 109.47596 * 69.19738 * 19 18 17 44 44 H 1.08998 * 109.47462 * 189.20381 * 19 18 17 45 45 H 1.09005 * 109.47310 * 309.20140 * 19 18 17 46 46 H 1.09002 * 109.47009 * 59.99808 * 20 18 17 47 47 H 1.08996 * 109.47617 * 180.02562 * 20 18 17 48 48 H 1.09006 * 109.46909 * 300.00508 * 20 18 17 49 49 H 0.97001 * 120.00111 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9866 0.2764 0.1200 7 6 4.0515 1.8857 -1.3240 8 6 5.5673 2.0872 -1.2607 9 1 5.9189 2.4958 -2.2080 10 6 6.2497 0.7427 -1.0008 11 6 5.9076 3.0591 -0.1286 12 6 5.4426 2.4661 1.2051 13 7 4.0149 2.1346 1.1032 14 16 2.9329 2.7135 2.2151 15 8 3.7256 3.0011 3.3588 16 8 1.9136 1.7245 2.2601 17 6 2.3011 4.2454 1.4770 18 6 1.2792 4.8826 2.4206 19 6 0.1200 3.9105 2.6486 20 6 1.9493 5.2000 3.7589 21 6 0.7548 6.1556 1.8077 22 1 1.1079 6.4732 0.8376 23 6 -0.1757 6.9147 2.4851 24 7 -0.8562 7.8428 1.8487 25 14 -0.4697 6.6247 4.3068 26 1 0.5246 7.3940 5.0974 27 1 -1.8397 7.0726 4.6646 28 1 -0.3280 5.1773 4.6070 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.5631 2.8469 -1.4845 33 1 3.8080 1.2122 -2.1456 34 1 5.8986 0.3342 -0.0532 35 1 6.0075 0.0504 -1.8070 36 1 7.3294 0.8860 -0.9561 37 1 5.4017 4.0092 -0.3004 38 1 6.9852 3.2203 -0.0992 39 1 5.5925 3.1953 2.0013 40 1 6.0126 1.5633 1.4245 41 1 1.8233 4.0193 0.5237 42 1 3.1270 4.9378 1.3142 43 1 0.4679 3.0616 3.2372 44 1 -0.6814 4.4198 3.1838 45 1 -0.2526 3.5574 1.6870 46 1 2.7752 5.8926 3.5965 47 1 1.2212 5.6536 4.4314 48 1 2.3290 4.2795 4.2025 49 1 -1.5111 8.3766 2.3252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451402607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:52 Heat of formation + Delta-G solvation = -128.035712 kcal Electronic energy + Delta-G solvation = -32692.014946 eV Core-core repulsion = 28554.934226 eV Total energy + Delta-G solvation = -4137.080719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81692 -38.91319 -36.96792 -36.63948 -36.04679 -35.50530 -33.61725 -31.86239 -31.80077 -27.96221 -27.54284 -27.28004 -26.27443 -24.95280 -24.73178 -23.89073 -21.32757 -20.04013 -19.19378 -18.35698 -18.02248 -17.44446 -16.64670 -16.12194 -16.02329 -15.73591 -15.38728 -15.28466 -14.91167 -14.74378 -14.38794 -14.15425 -13.92119 -13.39868 -13.09839 -13.04887 -12.99913 -12.74995 -12.44304 -12.38688 -12.28766 -12.02550 -11.89504 -11.58361 -11.50065 -11.47051 -11.36934 -11.26593 -11.13185 -10.90485 -10.88036 -10.71296 -10.61603 -10.53321 -10.19367 -10.02545 -9.92091 -9.88039 -9.14695 -8.86944 -8.64050 -8.37802 -6.12410 -4.07590 0.69175 2.12608 2.58565 3.02091 3.29543 3.38949 3.42190 4.19376 4.34300 4.40330 4.40403 4.58889 4.62881 4.78428 4.82818 4.86171 5.03163 5.17528 5.23281 5.28072 5.32986 5.40968 5.43279 5.45498 5.53167 5.57556 5.66515 5.72153 5.74916 5.82510 5.91683 5.96803 5.99408 6.10078 6.15300 6.31007 6.38693 6.41057 6.49865 6.58863 6.76543 6.78034 7.00561 7.24894 7.45041 7.71846 7.84554 8.48287 8.91975 9.52467 11.00406 Molecular weight = 347.16amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.004799 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.410074 B = 5832.621388 C = 6480.029738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.347 6.347 3 C 0.465 3.535 4 O -0.493 6.493 5 C 0.168 3.832 6 H 0.107 0.893 7 C -0.122 4.122 8 C -0.085 4.085 9 H 0.080 0.920 10 C -0.157 4.157 11 C -0.136 4.136 12 C 0.121 3.879 13 N -0.998 5.998 14 S 2.583 3.417 15 O -0.964 6.964 16 O -0.959 6.959 17 C -0.565 4.565 18 C 0.058 3.942 19 C -0.163 4.163 20 C -0.182 4.182 21 C -0.500 4.500 22 H 0.077 0.923 23 C 0.077 3.923 24 N -0.890 5.890 25 Si 0.872 3.128 26 H -0.282 1.282 27 H -0.301 1.301 28 H -0.247 1.247 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.154 0.846 42 H 0.116 0.884 43 H 0.031 0.969 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.853 -16.096 -7.366 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.262 6.262 3 C 0.307 3.693 4 O -0.381 6.381 5 C 0.060 3.940 6 H 0.124 0.876 7 C -0.161 4.161 8 C -0.104 4.104 9 H 0.098 0.902 10 C -0.214 4.214 11 C -0.175 4.175 12 C -0.003 4.003 13 N -0.835 5.835 14 S 2.685 3.315 15 O -0.955 6.955 16 O -0.950 6.950 17 C -0.699 4.699 18 C 0.055 3.945 19 C -0.221 4.221 20 C -0.239 4.239 21 C -0.539 4.539 22 H 0.095 0.905 23 C -0.126 4.126 24 N -0.527 5.527 25 Si 0.704 3.296 26 H -0.209 1.209 27 H -0.230 1.230 28 H -0.173 1.173 29 H 0.080 0.920 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.172 0.828 42 H 0.134 0.866 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.309 -16.150 -6.518 21.326 hybrid contribution -0.425 0.551 0.529 0.874 sum 11.883 -15.599 -5.989 20.504 Atomic orbital electron populations 1.23290 0.75613 1.03201 1.03382 1.86336 1.23994 1.32314 1.83564 1.23191 0.91162 0.82626 0.72325 1.90702 1.66914 1.35393 1.45097 1.20452 0.87400 0.96884 0.89280 0.87570 1.22049 0.96889 1.02728 0.94451 1.21019 0.93839 0.96266 0.99233 0.90161 1.22004 1.00541 0.96686 1.02188 1.22029 1.01729 0.99271 0.94470 1.21498 0.79241 1.01211 0.98392 1.57980 1.19521 1.63471 1.42536 1.05998 0.73282 0.78187 0.74047 1.93520 1.68933 1.86445 1.46597 1.93485 1.58058 1.57896 1.85525 1.30542 1.10022 1.15772 1.13571 1.18191 0.90080 0.96311 0.89956 1.22599 1.00301 0.97534 1.01639 1.22862 1.00938 1.01227 0.98884 1.20639 1.23738 1.04147 1.05376 0.90458 1.24942 0.94531 0.95091 0.98021 1.69949 1.23529 1.23312 1.35917 0.87482 0.75987 0.79344 0.86821 1.20893 1.22968 1.17280 0.91999 0.88566 0.90608 0.89610 0.90059 0.92000 0.92442 0.92331 0.90667 0.90276 0.88394 0.90724 0.82818 0.86606 0.94989 0.92056 0.91804 0.91940 0.93025 0.93606 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.35 -4.97 10.56 -42.18 -0.45 -5.42 16 3 C 0.46 7.14 4.20 36.01 0.15 7.29 16 4 O -0.49 -8.91 11.41 -26.54 -0.30 -9.21 16 5 C 0.17 2.05 2.87 -68.53 -0.20 1.86 16 6 H 0.11 1.08 6.69 -51.93 -0.35 0.73 16 7 C -0.12 -1.17 4.91 -26.39 -0.13 -1.30 16 8 C -0.09 -0.66 3.19 -90.58 -0.29 -0.95 16 9 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 10 C -0.16 -1.03 8.44 37.16 0.31 -0.72 16 11 C -0.14 -1.17 5.63 -26.61 -0.15 -1.32 16 12 C 0.12 1.32 5.86 -3.71 -0.02 1.30 16 13 N -1.00 -13.88 3.21 -107.46 -0.35 -14.23 16 14 S 2.58 48.53 3.78 -107.50 -0.41 48.12 16 15 O -0.96 -19.65 14.23 -57.54 -0.82 -20.47 16 16 O -0.96 -19.62 11.83 -68.16 -0.81 -20.42 16 17 C -0.56 -11.54 4.64 37.16 0.17 -11.36 16 18 C 0.06 1.40 0.52 -155.66 -0.08 1.32 16 19 C -0.16 -3.94 7.00 37.16 0.26 -3.68 16 20 C -0.18 -4.32 7.21 37.16 0.27 -4.05 16 21 C -0.50 -14.05 8.62 -34.44 -0.30 -14.35 16 22 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 23 C 0.08 2.23 5.30 -17.82 -0.09 2.13 16 24 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 25 Si 0.87 22.26 22.85 -169.99 -3.88 18.38 16 26 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.25 -5.97 4.64 56.52 0.26 -5.71 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 32 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.45 4.97 -51.93 -0.26 0.19 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 1.14 7.00 -51.93 -0.36 0.78 16 40 H 0.07 0.67 6.70 -51.93 -0.35 0.33 16 41 H 0.15 3.16 5.43 -51.92 -0.28 2.88 16 42 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 43 H 0.03 0.72 6.14 -51.93 -0.32 0.40 16 44 H 0.06 1.51 4.34 -51.93 -0.23 1.28 16 45 H 0.06 1.51 8.12 -51.93 -0.42 1.09 16 46 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.05 1.25 2.25 -51.93 -0.12 1.14 16 48 H 0.05 1.03 5.47 -51.93 -0.28 0.74 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -34.75 360.66 -7.56 -42.31 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.73 Total: 4.20 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 0.97 Total: -22.27 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.43 Total: -40.64 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -2.37 Total: -55.52 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -3.88 Total: 18.38 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.41 Total: 48.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.75 -7.56 -42.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451402607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.730 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds