Wall clock time and date at job start Wed Apr 1 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00202 * 2 1 4 4 C 1.52996 * 109.47481 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46904 * 65.00092 * 4 3 2 6 6 C 1.36906 * 119.99874 * 264.61100 * 5 4 3 7 7 H 1.07994 * 120.00091 * 139.15289 * 6 5 4 8 8 C 1.39020 * 119.99777 * 319.15051 * 6 5 4 9 9 N 1.31383 * 120.00371 * 343.61192 * 8 6 5 10 10 Si 1.86802 * 119.99484 * 163.60876 * 8 6 5 11 11 H 1.48498 * 109.47355 * 60.00276 * 10 8 6 12 12 H 1.48506 * 109.47127 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47554 * 299.99949 * 10 8 6 14 14 C 1.34774 * 120.00182 * 84.61104 * 5 4 3 15 15 O 1.21637 * 120.00012 * 4.26327 * 14 5 4 16 16 C 1.47417 * 120.00145 * 184.25774 * 14 5 4 17 17 C 1.39839 * 120.08862 * 325.70333 * 16 14 5 18 18 C 1.37674 * 120.14051 * 179.77576 * 17 16 14 19 19 C 1.39127 * 120.18251 * 0.55401 * 18 17 16 20 20 C 1.39801 * 119.85636 * 359.61489 * 19 18 17 21 21 C 1.38013 * 120.23132 * 0.15677 * 20 19 18 22 22 N 1.40359 * 119.46287 * 180.34987 * 20 19 18 23 23 C 1.35147 * 118.52356 * 18.05127 * 22 20 19 24 24 O 1.21292 * 120.31372 * 180.79509 * 23 22 20 25 25 C 1.50686 * 119.37525 * 0.76956 * 23 22 20 26 26 H 1.08993 * 109.27833 * 85.16055 * 25 23 22 27 27 C 1.53003 * 109.37287 * 204.86488 * 25 23 22 28 28 N 1.39081 * 119.98583 * 179.50655 * 19 18 17 29 29 C 1.46897 * 110.99844 * 268.83887 * 28 19 18 30 30 H 1.09005 * 109.47675 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47647 * 300.00308 * 1 2 3 32 32 H 1.09008 * 109.47064 * 59.99915 * 1 2 3 33 33 H 1.09001 * 109.47134 * 300.00204 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99406 * 3 2 1 35 35 H 1.09003 * 109.47433 * 185.00285 * 4 3 2 36 36 H 1.09002 * 109.47238 * 305.00458 * 4 3 2 37 37 H 0.97003 * 119.99731 * 179.97438 * 9 8 6 38 38 H 1.08005 * 119.92892 * 0.05312 * 17 16 14 39 39 H 1.07999 * 119.90732 * 180.26241 * 18 17 16 40 40 H 1.08003 * 120.11702 * 179.97438 * 21 20 19 41 41 H 0.97000 * 120.74119 * 198.05019 * 22 20 19 42 42 H 1.08995 * 109.47519 * 180.60128 * 27 25 23 43 43 H 1.09004 * 109.47129 * 300.59366 * 27 25 23 44 44 H 1.08998 * 109.47446 * 60.59541 * 27 25 23 45 45 H 1.08996 * 109.47767 * 56.05059 * 29 28 19 46 46 H 1.09004 * 109.47041 * 176.04798 * 29 28 19 47 47 H 1.09003 * 109.47406 * 296.04383 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2040 -0.7851 -1.3030 7 1 3.8887 -1.3529 -2.1658 8 6 4.8408 -1.4240 -0.2452 9 7 5.5056 -0.7202 0.6431 10 14 4.7514 -3.2831 -0.0869 11 1 5.3437 -3.9119 -1.2947 12 1 5.5064 -3.7143 1.1170 13 1 3.3324 -3.7012 0.0435 14 6 4.1587 1.3209 -2.3510 15 8 4.0321 2.5290 -2.2858 16 6 4.5113 0.6850 -3.6333 17 6 5.3230 -0.4535 -3.6514 18 6 5.6492 -1.0510 -4.8481 19 6 5.1826 -0.5187 -6.0458 20 6 4.3738 0.6215 -6.0323 21 6 4.0394 1.2222 -4.8357 22 7 3.9015 1.1472 -7.2451 23 6 3.9208 0.3578 -8.3418 24 8 3.5339 0.7836 -9.4095 25 6 4.4281 -1.0564 -8.2257 26 1 3.6154 -1.7044 -7.8978 27 6 4.9339 -1.5278 -9.5906 28 7 5.5232 -1.1196 -7.2530 29 6 6.7519 -0.5334 -7.8047 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.9784 2.1765 0.0903 36 1 3.8508 0.5684 0.8427 37 1 5.9496 -1.1661 1.3813 38 1 5.6912 -0.8677 -2.7243 39 1 6.2729 -1.9327 -4.8573 40 1 3.4147 2.1032 -4.8274 41 1 3.5687 2.0570 -7.2949 42 1 5.2914 -2.5543 -9.5109 43 1 4.1209 -1.4815 -10.3152 44 1 5.7497 -0.8833 -9.9182 45 1 7.5541 -0.6138 -7.0711 46 1 7.0341 -1.0681 -8.7117 47 1 6.5794 0.5167 -8.0408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457201287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:38 Heat of formation + Delta-G solvation = -53.542287 kcal Electronic energy + Delta-G solvation = -31652.741173 eV Core-core repulsion = 27415.739530 eV Total energy + Delta-G solvation = -4237.001642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.44262 -39.26838 -38.17168 -37.11358 -36.42560 -34.96075 -34.75468 -31.71463 -31.62409 -29.78609 -29.70751 -28.30010 -26.87511 -25.86082 -24.95352 -23.61467 -22.92480 -22.50229 -21.58333 -19.80626 -18.73932 -18.19878 -17.63187 -16.94352 -16.73578 -15.94575 -15.71735 -15.45811 -15.31290 -14.97007 -14.62859 -14.55469 -14.42420 -14.17304 -13.86408 -13.63882 -13.34249 -13.29632 -13.18389 -12.59299 -12.48393 -12.22933 -12.12340 -11.99870 -11.70175 -11.64163 -11.35899 -11.25466 -11.16654 -11.10064 -10.94549 -10.74790 -10.52098 -10.44489 -10.37877 -10.09879 -9.22117 -9.04027 -8.95824 -8.62853 -8.24641 -7.68047 -7.56080 -6.44411 -4.12893 1.26878 1.59279 2.46711 2.92983 3.12497 3.20708 3.25332 3.56863 3.71110 4.05338 4.16649 4.32675 4.43286 4.65035 4.66690 4.96421 4.99240 4.99788 5.21580 5.32102 5.51643 5.56058 5.60399 5.62255 5.67849 5.69432 5.76387 5.79271 5.92613 5.93650 5.95516 6.00148 6.06126 6.14407 6.24262 6.34329 6.52408 6.60416 6.71566 6.72422 7.02711 7.03615 7.13598 7.20206 7.38153 7.47436 7.72948 7.90355 7.90832 8.27577 8.97732 9.35758 9.78440 10.57929 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003560 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.395910 B = 7863.681005 C = 8811.759253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.116 3.884 5 N -0.414 5.414 6 C -0.327 4.327 7 H 0.094 0.906 8 C 0.049 3.951 9 N -0.860 5.860 10 Si 0.913 3.087 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.270 1.270 14 C 0.503 3.497 15 O -0.605 6.605 16 C -0.063 4.063 17 C -0.076 4.076 18 C -0.090 4.090 19 C 0.054 3.946 20 C 0.097 3.903 21 C -0.100 4.100 22 N -0.661 5.661 23 C 0.490 3.510 24 O -0.530 6.530 25 C 0.068 3.932 26 H 0.118 0.882 27 C -0.136 4.136 28 N -0.480 5.480 29 C 0.020 3.980 30 H 0.078 0.922 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.040 0.960 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.272 0.728 38 H 0.172 0.828 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.410 0.590 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -2.852 -9.205 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.007 4.007 5 N -0.129 5.129 6 C -0.455 4.455 7 H 0.111 0.889 8 C -0.157 4.157 9 N -0.496 5.496 10 Si 0.739 3.261 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.293 3.707 15 O -0.493 6.493 16 C -0.067 4.067 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.043 4.043 20 C 0.001 3.999 21 C -0.123 4.123 22 N -0.307 5.307 23 C 0.276 3.724 24 O -0.405 6.405 25 C -0.043 4.043 26 H 0.136 0.864 27 C -0.194 4.194 28 N -0.200 5.200 29 C -0.126 4.126 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.189 0.811 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.248 0.752 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.870 -2.908 -9.513 9.985 hybrid contribution -0.845 0.613 0.169 1.058 sum -1.715 -2.294 -9.344 9.773 Atomic orbital electron populations 1.22647 0.83315 1.01796 0.98855 1.88126 1.17465 1.27656 1.95050 1.23045 0.96443 0.84409 0.98774 1.21470 0.89123 0.99285 0.90841 1.43170 1.55019 1.07382 1.07360 1.19392 1.37132 0.82268 1.06738 0.88893 1.25340 0.94069 0.99998 0.96320 1.69849 1.28833 1.36747 1.14138 0.86214 0.78896 0.82879 0.78100 1.19438 1.20983 1.19527 1.18168 0.81510 0.86087 0.84946 1.90637 1.58148 1.14112 1.86358 1.19913 0.97907 0.95680 0.93150 1.22299 0.94818 0.93091 0.99369 1.20831 1.00543 1.00058 0.89579 1.18462 1.01048 0.93597 0.91200 1.18086 1.00627 0.95780 0.85449 1.20639 1.01329 1.00729 0.89566 1.43904 1.62347 1.16577 1.07887 1.21971 0.77603 0.89656 0.83153 1.90722 1.47037 1.75649 1.27098 1.21978 0.95162 0.92118 0.95012 0.86396 1.21803 1.02257 1.02035 0.93298 1.59106 1.03981 1.55175 1.01740 1.22611 0.91446 0.97365 1.01181 0.90372 0.95108 0.95008 0.94141 0.94090 0.90882 0.86865 0.91755 0.81139 0.84826 0.85342 0.75197 0.90436 0.90642 0.91752 0.90160 0.90021 0.95287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.44 10.43 -35.23 -0.37 -7.81 16 3 C 0.05 1.01 6.24 37.16 0.23 1.24 16 4 C 0.12 2.63 5.30 -4.04 -0.02 2.61 16 5 N -0.41 -9.78 2.46 -116.03 -0.29 -10.07 16 6 C -0.33 -7.63 5.92 -15.00 -0.09 -7.72 16 7 H 0.09 2.13 6.28 -52.49 -0.33 1.80 16 8 C 0.05 1.15 4.98 -17.45 -0.09 1.06 16 9 N -0.86 -21.09 11.47 55.50 0.64 -20.45 16 10 Si 0.91 18.49 29.58 -169.99 -5.03 13.46 16 11 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 C 0.50 11.82 7.33 -12.52 -0.09 11.72 16 15 O -0.61 -15.40 16.44 5.25 0.09 -15.31 16 16 C -0.06 -1.26 5.48 -104.94 -0.58 -1.84 16 17 C -0.08 -1.40 7.72 -39.19 -0.30 -1.71 16 18 C -0.09 -1.40 9.94 -39.46 -0.39 -1.80 16 19 C 0.05 0.81 4.85 -83.66 -0.41 0.40 16 20 C 0.10 1.52 6.50 -83.45 -0.54 0.98 16 21 C -0.10 -1.78 9.49 -39.05 -0.37 -2.15 16 22 N -0.66 -9.40 5.49 -9.66 -0.05 -9.45 16 23 C 0.49 7.03 6.89 -10.83 -0.07 6.96 16 24 O -0.53 -8.76 16.95 5.55 0.09 -8.66 16 25 C 0.07 0.83 3.06 -69.03 -0.21 0.62 16 26 H 0.12 1.39 8.14 -51.93 -0.42 0.96 16 27 C -0.14 -1.32 7.99 37.16 0.30 -1.03 16 28 N -0.48 -6.08 4.77 -172.74 -0.82 -6.90 16 29 C 0.02 0.22 8.60 60.06 0.52 0.73 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.67 7.53 -51.93 -0.39 1.28 16 36 H 0.11 2.73 5.66 -51.93 -0.29 2.43 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.17 3.43 5.56 -52.48 -0.29 3.13 16 39 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.13 2.23 7.99 -52.48 -0.42 1.81 16 41 H 0.41 5.28 8.90 -40.82 -0.36 4.92 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 44 H 0.06 0.62 6.28 -51.93 -0.33 0.29 16 45 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 46 H 0.08 0.72 6.10 -51.93 -0.32 0.40 16 47 H 0.03 0.35 7.62 -51.93 -0.40 -0.05 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -29.01 381.50 -7.47 -36.48 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.47 Total: 11.28 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: -1.01 Total: 11.69 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.53 Total: -46.88 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.19 Total: -31.78 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.01 -7.47 -36.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.059 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds