Wall clock time and date at job start Wed Apr 1 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00202 * 2 1 4 4 C 1.52996 * 109.47481 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46904 * 65.00092 * 4 3 2 6 6 C 1.36906 * 119.99874 * 264.61100 * 5 4 3 7 7 H 1.07994 * 120.00091 * 139.15289 * 6 5 4 8 8 C 1.39020 * 119.99777 * 319.15051 * 6 5 4 9 9 N 1.31383 * 120.00371 * 343.61192 * 8 6 5 10 10 Si 1.86802 * 119.99484 * 163.60876 * 8 6 5 11 11 H 1.48498 * 109.47355 * 60.00276 * 10 8 6 12 12 H 1.48506 * 109.47127 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47554 * 299.99949 * 10 8 6 14 14 C 1.34774 * 120.00182 * 84.61104 * 5 4 3 15 15 O 1.21637 * 120.00012 * 4.26327 * 14 5 4 16 16 C 1.47417 * 120.00145 * 184.25774 * 14 5 4 17 17 C 1.39839 * 120.08862 * 325.70333 * 16 14 5 18 18 C 1.37674 * 120.14051 * 179.77576 * 17 16 14 19 19 C 1.39127 * 120.18251 * 0.55401 * 18 17 16 20 20 C 1.39801 * 119.85636 * 359.61489 * 19 18 17 21 21 C 1.38013 * 120.23132 * 0.15677 * 20 19 18 22 22 N 1.40359 * 119.46287 * 180.34987 * 20 19 18 23 23 C 1.35147 * 118.52356 * 18.05127 * 22 20 19 24 24 O 1.21292 * 120.31372 * 180.79509 * 23 22 20 25 25 C 1.50686 * 119.37525 * 0.76956 * 23 22 20 26 26 H 1.08993 * 109.27833 * 85.16055 * 25 23 22 27 27 C 1.53003 * 109.37287 * 204.86488 * 25 23 22 28 28 N 1.39081 * 119.98583 * 179.50655 * 19 18 17 29 29 C 1.46897 * 110.99844 * 268.83887 * 28 19 18 30 30 H 1.09005 * 109.47675 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47647 * 300.00308 * 1 2 3 32 32 H 1.09008 * 109.47064 * 59.99915 * 1 2 3 33 33 H 1.09001 * 109.47134 * 300.00204 * 3 2 1 34 34 H 1.09006 * 109.47285 * 59.99406 * 3 2 1 35 35 H 1.09003 * 109.47433 * 185.00285 * 4 3 2 36 36 H 1.09002 * 109.47238 * 305.00458 * 4 3 2 37 37 H 0.97003 * 119.99731 * 179.97438 * 9 8 6 38 38 H 1.08005 * 119.92892 * 0.05312 * 17 16 14 39 39 H 1.07999 * 119.90732 * 180.26241 * 18 17 16 40 40 H 1.08003 * 120.11702 * 179.97438 * 21 20 19 41 41 H 0.97000 * 120.74119 * 198.05019 * 22 20 19 42 42 H 1.08995 * 109.47519 * 180.60128 * 27 25 23 43 43 H 1.09004 * 109.47129 * 300.59366 * 27 25 23 44 44 H 1.08998 * 109.47446 * 60.59541 * 27 25 23 45 45 H 1.08996 * 109.47767 * 56.05059 * 29 28 19 46 46 H 1.09004 * 109.47041 * 176.04798 * 29 28 19 47 47 H 1.09003 * 109.47406 * 296.04383 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2040 -0.7851 -1.3030 7 1 3.8887 -1.3529 -2.1658 8 6 4.8408 -1.4240 -0.2452 9 7 5.5056 -0.7202 0.6431 10 14 4.7514 -3.2831 -0.0869 11 1 5.3437 -3.9119 -1.2947 12 1 5.5064 -3.7143 1.1170 13 1 3.3324 -3.7012 0.0435 14 6 4.1587 1.3209 -2.3510 15 8 4.0321 2.5290 -2.2858 16 6 4.5113 0.6850 -3.6333 17 6 5.3230 -0.4535 -3.6514 18 6 5.6492 -1.0510 -4.8481 19 6 5.1826 -0.5187 -6.0458 20 6 4.3738 0.6215 -6.0323 21 6 4.0394 1.2222 -4.8357 22 7 3.9015 1.1472 -7.2451 23 6 3.9208 0.3578 -8.3418 24 8 3.5339 0.7836 -9.4095 25 6 4.4281 -1.0564 -8.2257 26 1 3.6154 -1.7044 -7.8978 27 6 4.9339 -1.5278 -9.5906 28 7 5.5232 -1.1196 -7.2530 29 6 6.7519 -0.5334 -7.8047 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 -0.8900 34 1 1.6885 1.8464 0.8900 35 1 3.9784 2.1765 0.0903 36 1 3.8508 0.5684 0.8427 37 1 5.9496 -1.1661 1.3813 38 1 5.6912 -0.8677 -2.7243 39 1 6.2729 -1.9327 -4.8573 40 1 3.4147 2.1032 -4.8274 41 1 3.5687 2.0570 -7.2949 42 1 5.2914 -2.5543 -9.5109 43 1 4.1209 -1.4815 -10.3152 44 1 5.7497 -0.8833 -9.9182 45 1 7.5541 -0.6138 -7.0711 46 1 7.0341 -1.0681 -8.7117 47 1 6.5794 0.5167 -8.0408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457201287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:37 Heat of formation + Delta-G solvation = -73.213415 kcal Electronic energy + Delta-G solvation = -31653.594177 eV Core-core repulsion = 27415.739530 eV Total energy + Delta-G solvation = -4237.854646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61326 -40.88801 -39.53417 -38.58643 -37.66220 -36.70036 -36.09517 -33.51747 -32.76495 -31.28746 -30.95751 -29.57448 -27.92783 -27.29226 -26.62774 -24.78541 -24.24227 -23.83351 -23.04513 -21.38267 -20.19129 -19.48976 -18.83312 -18.45108 -17.96595 -17.39329 -17.18892 -16.88342 -16.77595 -16.31169 -16.13494 -15.96690 -15.78915 -15.49410 -15.34105 -15.02581 -14.79141 -14.71811 -14.28167 -13.93453 -13.69258 -13.52543 -13.31481 -13.13128 -12.96404 -12.95960 -12.81010 -12.71224 -12.53936 -12.47699 -12.42116 -12.13930 -12.04479 -11.85657 -11.67293 -11.60265 -10.97571 -10.55474 -10.41734 -10.17319 -9.56087 -9.35420 -8.96083 -8.22764 -5.96173 -0.09960 0.26295 1.27625 1.51728 1.58203 1.64209 1.78600 2.03061 2.37697 2.58465 2.75880 2.92804 3.00572 3.09678 3.28106 3.72483 3.80018 4.05515 4.10914 4.24389 4.27833 4.32714 4.39045 4.41621 4.51009 4.52234 4.55834 4.59850 4.60973 4.76224 4.79885 4.82309 4.84332 4.91027 4.94596 5.03705 5.20970 5.27055 5.34425 5.44206 5.54057 5.64268 5.65335 5.79749 5.84319 6.01346 6.23500 6.38914 6.46470 6.75676 7.16911 7.55492 7.98554 8.80607 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003560 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.395910 B = 7863.681005 C = 8811.759253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.063 3.937 4 C 0.114 3.886 5 N -0.423 5.423 6 C -0.329 4.329 7 H 0.096 0.904 8 C 0.015 3.985 9 N -0.892 5.892 10 Si 0.970 3.030 11 H -0.251 1.251 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.491 3.509 15 O -0.638 6.638 16 C -0.091 4.091 17 C -0.080 4.080 18 C -0.078 4.078 19 C 0.069 3.931 20 C 0.104 3.896 21 C -0.102 4.102 22 N -0.660 5.660 23 C 0.489 3.511 24 O -0.552 6.552 25 C 0.067 3.933 26 H 0.126 0.874 27 C -0.130 4.130 28 N -0.474 5.474 29 C 0.017 3.983 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.272 0.728 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.414 0.586 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 -5.127 -11.158 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.009 4.009 5 N -0.138 5.138 6 C -0.456 4.456 7 H 0.114 0.886 8 C -0.189 4.189 9 N -0.529 5.529 10 Si 0.794 3.206 11 H -0.175 1.175 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.282 3.718 15 O -0.528 6.528 16 C -0.095 4.095 17 C -0.100 4.100 18 C -0.098 4.098 19 C -0.029 4.029 20 C 0.007 3.993 21 C -0.124 4.124 22 N -0.305 5.305 23 C 0.277 3.723 24 O -0.428 6.428 25 C -0.044 4.044 26 H 0.144 0.856 27 C -0.188 4.188 28 N -0.194 5.194 29 C -0.128 4.128 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.170 0.830 39 H 0.179 0.821 40 H 0.142 0.858 41 H 0.253 0.747 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.791 -5.193 -11.485 12.629 hybrid contribution -0.895 1.362 0.678 1.765 sum -1.686 -3.831 -10.806 11.589 Atomic orbital electron populations 1.22883 0.80667 1.03348 1.00196 1.88058 1.20408 1.27668 1.95303 1.22826 0.94464 0.84697 0.99479 1.21412 0.91267 0.98003 0.90256 1.43372 1.54994 1.07752 1.07642 1.19527 1.37009 0.82109 1.06996 0.88633 1.26001 0.93536 1.03488 0.95829 1.69951 1.29925 1.38222 1.14781 0.85331 0.78286 0.78473 0.78505 1.17498 1.21250 1.20205 1.18760 0.80955 0.85906 0.86174 1.90585 1.59648 1.15434 1.87106 1.19728 1.00349 0.97242 0.92193 1.22046 0.95120 0.92901 0.99903 1.20965 1.00072 1.00223 0.88499 1.18613 0.99393 0.92594 0.92286 1.18051 1.00369 0.95753 0.85159 1.20551 1.01448 1.00745 0.89692 1.43941 1.62122 1.16988 1.07475 1.22467 0.76936 0.90404 0.82531 1.90717 1.48064 1.76230 1.27784 1.22188 0.95324 0.90588 0.96318 0.85620 1.21813 1.02265 1.03265 0.91432 1.59199 1.04710 1.54445 1.01010 1.22745 0.90556 0.96972 1.02550 0.88774 0.92918 0.94432 0.95233 0.91364 0.92318 0.88428 0.91829 0.83002 0.82119 0.85820 0.74743 0.88187 0.90764 0.91482 0.89476 0.87264 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.10 10.43 -148.98 -1.55 -17.65 16 3 C 0.06 2.54 6.24 71.98 0.45 2.99 16 4 C 0.11 5.39 5.30 86.38 0.46 5.85 16 5 N -0.42 -20.75 2.46 -639.26 -1.57 -22.32 16 6 C -0.33 -15.61 5.92 84.09 0.50 -15.12 16 7 H 0.10 4.41 6.28 -2.91 -0.02 4.39 16 8 C 0.01 0.70 4.98 84.95 0.42 1.12 16 9 N -0.89 -44.88 11.47 21.68 0.25 -44.63 16 10 Si 0.97 37.58 29.58 68.60 2.03 39.61 16 11 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 12 H -0.29 -11.15 7.11 99.48 0.71 -10.44 16 13 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 14 C 0.49 24.07 7.33 86.66 0.64 24.71 16 15 O -0.64 -34.11 16.44 -4.15 -0.07 -34.17 16 16 C -0.09 -3.76 5.48 -20.07 -0.11 -3.87 16 17 C -0.08 -2.93 7.72 22.52 0.17 -2.75 16 18 C -0.08 -2.26 9.94 22.35 0.22 -2.04 16 19 C 0.07 1.90 4.85 38.58 0.19 2.08 16 20 C 0.10 3.13 6.50 38.10 0.25 3.37 16 21 C -0.10 -3.66 9.49 22.62 0.21 -3.44 16 22 N -0.66 -17.92 5.49 -302.64 -1.66 -19.58 16 23 C 0.49 13.06 6.89 87.59 0.60 13.67 16 24 O -0.55 -17.29 16.95 -3.07 -0.05 -17.34 16 25 C 0.07 1.41 3.06 44.22 0.14 1.55 16 26 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 27 C -0.13 -2.04 7.99 71.98 0.58 -1.47 16 28 N -0.47 -10.36 4.77 -700.43 -3.34 -13.70 16 29 C 0.02 0.31 8.60 127.69 1.10 1.41 16 30 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.06 2.85 7.53 -2.39 -0.02 2.83 16 36 H 0.10 4.91 5.66 -2.39 -0.01 4.89 16 37 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 38 H 0.15 6.17 5.56 -2.91 -0.02 6.16 16 39 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.12 4.45 7.99 -2.91 -0.02 4.43 16 41 H 0.41 10.41 8.90 -92.71 -0.83 9.59 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.23 7.86 -2.38 -0.02 1.21 16 44 H 0.07 1.03 6.28 -2.39 -0.02 1.01 16 45 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 46 H 0.11 1.45 6.10 -2.38 -0.01 1.43 16 47 H 0.02 0.36 7.62 -2.39 -0.02 0.34 16 Total: -1.00 -64.18 381.50 1.28 -62.90 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: 0.19 Total: 36.83 kcal Atomic # 6 Polarization: 23.00 SS G_CDS: 7.06 Total: 30.06 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -6.32 Total: -100.23 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -1.67 Total: -69.17 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -64.18 1.28 -62.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457201287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.317 kcal (2) G-P(sol) polarization free energy of solvation -64.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds