Wall clock time and date at job start Wed Apr 1 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46639 * 2 1 4 4 C 1.50696 * 109.47224 * 240.00001 * 2 1 3 5 5 C 1.38302 * 119.96326 * 285.95011 * 4 2 1 6 6 C 1.38261 * 120.13766 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.07077 * 0.02562 * 6 5 4 8 8 C 1.38840 * 119.93178 * 359.97438 * 7 6 5 9 9 N 1.39955 * 120.07487 * 180.02562 * 8 7 6 10 10 C 1.47096 * 125.55388 * 0.02562 * 9 8 7 11 11 C 1.54087 * 103.77567 * 179.97438 * 10 9 8 12 12 O 1.45699 * 104.01095 * 0.02562 * 11 10 9 13 13 C 1.33781 * 109.47379 * 359.76905 * 12 11 10 14 14 O 1.21516 * 123.07480 * 180.23105 * 13 12 11 15 15 C 1.38087 * 119.96397 * 105.67160 * 4 2 1 16 16 N 1.46898 * 109.47141 * 119.99586 * 2 1 3 17 17 C 1.46902 * 111.00318 * 301.69364 * 16 2 1 18 18 C 1.46899 * 111.00107 * 177.73535 * 16 2 1 19 19 C 1.50696 * 109.47074 * 190.00489 * 18 16 2 20 20 O 1.21288 * 120.00385 * 359.97438 * 19 18 16 21 21 N 1.34785 * 119.99872 * 179.97438 * 19 18 16 22 22 C 1.37099 * 119.99952 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99900 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99852 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00065 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47062 * 59.99473 * 26 24 22 28 28 H 1.48495 * 109.47008 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46671 * 299.99928 * 26 24 22 30 30 H 1.09004 * 109.46639 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47275 * 299.99936 * 1 2 3 32 32 H 1.08999 * 109.47303 * 60.00382 * 1 2 3 33 33 H 1.07995 * 119.93165 * 0.02562 * 5 4 2 34 34 H 1.07998 * 119.96132 * 180.02562 * 6 5 4 35 35 H 1.08007 * 120.03546 * 179.97438 * 7 6 5 36 36 H 1.08996 * 110.56367 * 298.53614 * 10 9 8 37 37 H 1.08998 * 110.56195 * 61.24571 * 10 9 8 38 38 H 1.09000 * 110.51664 * 118.63270 * 11 10 9 39 39 H 1.08998 * 110.52292 * 241.36852 * 11 10 9 40 40 H 1.08000 * 120.04013 * 0.02562 * 15 4 2 41 41 H 1.09003 * 109.46829 * 302.61380 * 17 16 2 42 42 H 1.08993 * 109.47582 * 62.61169 * 17 16 2 43 43 H 1.09007 * 109.47135 * 182.61712 * 17 16 2 44 44 H 1.08999 * 109.47019 * 70.00007 * 18 16 2 45 45 H 1.08998 * 109.46837 * 309.99785 * 18 16 2 46 46 H 0.96997 * 119.99946 * 0.02562 * 21 19 18 47 47 H 0.97002 * 120.00613 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.9522 -2.0886 -1.3134 6 6 2.4125 -2.7441 -2.4404 7 6 2.9546 -2.0239 -3.4871 8 6 3.0365 -0.6402 -3.4068 9 7 3.5846 0.0925 -4.4657 10 6 4.1090 -0.4750 -5.7174 11 6 4.5784 0.7592 -6.5116 12 8 4.2731 1.8809 -5.6332 13 6 3.7132 1.4257 -4.5067 14 8 3.3563 2.1544 -3.6021 15 6 2.5670 0.0159 -2.2762 16 7 2.0197 -0.6924 1.1995 17 6 1.5159 -0.0500 2.4208 18 6 3.4872 -0.7591 1.2066 19 6 3.9428 -1.6792 2.3097 20 8 3.1255 -2.2252 3.0204 21 7 5.2585 -1.8953 2.5067 22 6 5.6731 -2.7319 3.5106 23 1 4.9453 -3.2182 4.1433 24 6 7.0295 -2.9543 3.7139 25 7 7.9149 -2.3631 2.9437 26 14 7.5944 -4.0948 5.0813 27 1 7.0381 -5.4529 4.8545 28 1 9.0777 -4.1627 5.0881 29 1 7.1160 -3.5758 6.3878 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.5292 -2.6539 -0.4963 34 1 2.3481 -3.8204 -2.5024 35 1 3.3143 -2.5365 -4.3670 36 1 4.9476 -1.1409 -5.5141 37 1 3.3233 -1.0041 -6.2566 38 1 5.6501 0.7052 -6.7034 39 1 4.0256 0.8446 -7.4471 40 1 2.6256 1.0924 -2.2125 41 1 1.8151 0.9981 2.4299 42 1 0.4283 -0.1176 2.4448 43 1 1.9307 -0.5538 3.2939 44 1 3.8954 0.2378 1.3731 45 1 3.8382 -1.1401 0.2476 46 1 5.9121 -1.4583 1.9386 47 1 8.8619 -2.5186 3.0853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497124276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:03 Heat of formation + Delta-G solvation = -52.523618 kcal Electronic energy + Delta-G solvation = -30819.870366 eV Core-core repulsion = 26582.912896 eV Total energy + Delta-G solvation = -4236.957470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20627 -39.79831 -38.41812 -37.60690 -36.89256 -35.47600 -33.84506 -31.96205 -31.18502 -31.10854 -29.68403 -29.21706 -27.33353 -25.51615 -24.60209 -23.91921 -23.83275 -22.02431 -21.44719 -19.86926 -19.06681 -17.95723 -17.84669 -17.73953 -17.29283 -16.48849 -16.06735 -15.70573 -15.17474 -15.12762 -14.66587 -14.59652 -14.54032 -14.36182 -14.22407 -13.97361 -13.61937 -13.47531 -13.42575 -12.93376 -12.91998 -12.55053 -12.24375 -12.04076 -11.92049 -11.81329 -11.47553 -11.41972 -11.22504 -11.15385 -11.11333 -10.82420 -10.72372 -10.41047 -10.40597 -10.31140 -10.16397 -9.41275 -8.78780 -8.36160 -8.07278 -7.91476 -7.77116 -6.36202 -3.76919 1.23728 1.38319 1.94084 2.44857 2.96474 3.23009 3.28143 3.32609 3.58973 3.76540 3.98046 4.06810 4.14852 4.17064 4.31578 4.65410 4.72430 4.79214 4.92777 5.04914 5.07824 5.21672 5.27984 5.33931 5.38514 5.48191 5.53372 5.61222 5.68385 5.83296 5.83864 5.97532 6.04384 6.07937 6.10479 6.23109 6.28545 6.33751 6.38246 6.52395 6.62503 6.75840 6.94219 7.06070 7.37933 7.49794 7.59731 7.63365 8.12016 8.68183 9.23535 9.61134 10.13389 10.81597 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.002909 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.684157 B = 9622.085710 C =11008.678351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.117 3.883 3 H 0.047 0.953 4 C -0.046 4.046 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.156 4.156 8 C 0.170 3.830 9 N -0.568 5.568 10 C 0.059 3.941 11 C 0.042 3.958 12 O -0.322 6.322 13 C 0.643 3.357 14 O -0.500 6.500 15 C -0.148 4.148 16 N -0.509 5.509 17 C 0.021 3.979 18 C 0.044 3.956 19 C 0.448 3.552 20 O -0.578 6.578 21 N -0.566 5.566 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.014 0.986 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 3.883 -21.621 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.047 4.047 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.176 4.176 8 C 0.078 3.922 9 N -0.305 5.305 10 C -0.064 4.064 11 C -0.033 4.033 12 O -0.233 6.233 13 C 0.398 3.602 14 O -0.383 6.383 15 C -0.169 4.169 16 N -0.233 5.233 17 C -0.127 4.127 18 C -0.088 4.088 19 C 0.233 3.767 20 O -0.462 6.462 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.171 0.829 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.291 3.706 -20.794 23.075 hybrid contribution 1.366 0.325 0.027 1.405 sum -7.925 4.031 -20.766 22.589 Atomic orbital electron populations 1.21844 0.93265 1.02894 1.01602 1.20601 0.95813 0.94777 0.87940 0.93469 1.19653 0.96898 0.93864 0.94310 1.21178 0.99429 0.93955 0.97797 1.20964 0.97592 0.99852 0.92863 1.20631 1.05229 0.91002 1.00761 1.17262 0.97973 0.90306 0.86625 1.45326 1.61081 1.06222 1.17844 1.22970 1.01446 0.97471 0.84492 1.24353 1.03922 0.81549 0.93467 1.87332 1.74454 1.33257 1.28207 1.18457 0.77629 0.81788 0.82364 1.90972 1.52355 1.59919 1.35094 1.21407 1.00943 1.02325 0.92188 1.61669 1.08228 1.52209 1.01183 1.22572 1.00429 0.95719 0.93957 1.21880 0.88218 0.98635 1.00024 1.19724 0.83231 0.86389 0.87318 1.90472 1.52628 1.53383 1.49714 1.41866 1.05135 1.42142 1.31089 1.19641 0.91676 1.21902 1.09471 0.87997 1.25244 0.95612 0.98405 0.98704 1.69611 1.02035 1.43666 1.39117 0.85939 0.77192 0.80331 0.80867 1.19932 1.21042 1.19961 0.91432 0.91977 0.92364 0.84541 0.85385 0.86033 0.88008 0.88161 0.87049 0.87171 0.82912 0.96784 0.91728 0.88588 0.93684 0.89378 0.77550 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.83 37.16 0.33 -1.37 16 2 C 0.12 1.71 2.27 -68.87 -0.16 1.55 16 3 H 0.05 0.71 7.94 -51.93 -0.41 0.29 16 4 C -0.05 -0.66 3.43 -104.66 -0.36 -1.02 16 5 C -0.10 -1.46 8.61 -39.55 -0.34 -1.80 16 6 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 7 C -0.16 -1.68 9.49 -39.40 -0.37 -2.05 16 8 C 0.17 2.12 6.63 -83.68 -0.56 1.57 16 9 N -0.57 -6.06 3.16 -118.27 -0.37 -6.44 16 10 C 0.06 0.30 6.49 -3.15 -0.02 0.28 16 11 C 0.04 0.18 8.23 37.73 0.31 0.49 16 12 O -0.32 -3.31 11.09 -37.86 -0.42 -3.73 16 13 C 0.64 8.34 8.77 53.71 0.47 8.81 16 14 O -0.50 -8.33 14.75 -19.12 -0.28 -8.61 16 15 C -0.15 -2.14 8.93 -39.39 -0.35 -2.49 16 16 N -0.51 -8.84 3.87 -237.73 -0.92 -9.76 16 17 C 0.02 0.35 8.74 60.07 0.52 0.88 16 18 C 0.04 0.85 5.17 -4.98 -0.03 0.82 16 19 C 0.45 10.87 7.45 -10.98 -0.08 10.78 16 20 O -0.58 -15.62 13.93 5.55 0.08 -15.55 16 21 N -0.57 -14.76 5.29 -10.96 -0.06 -14.82 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 26 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.14 2.04 7.90 -52.49 -0.41 1.63 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 0.94 7.31 -52.48 -0.38 0.55 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.11 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.15 2.43 5.18 -52.49 -0.27 2.16 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.94 6.42 -51.93 -0.33 0.61 16 43 H 0.10 1.94 5.80 -51.93 -0.30 1.64 16 44 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 45 H 0.09 1.67 6.31 -51.93 -0.33 1.34 16 46 H 0.39 9.94 7.90 -40.82 -0.32 9.62 16 47 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -35.00 384.03 -8.17 -43.17 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.41 Total: 11.06 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.27 Total: 6.89 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.63 Total: -55.32 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.62 Total: -27.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.00 -8.17 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497124276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.356 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds