Wall clock time and date at job start Wed Apr 1 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46639 * 2 1 4 4 C 1.50696 * 109.47224 * 240.00001 * 2 1 3 5 5 C 1.38302 * 119.96326 * 285.95011 * 4 2 1 6 6 C 1.38261 * 120.13766 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.07077 * 0.02562 * 6 5 4 8 8 C 1.38840 * 119.93178 * 359.97438 * 7 6 5 9 9 N 1.39955 * 120.07487 * 180.02562 * 8 7 6 10 10 C 1.47096 * 125.55388 * 0.02562 * 9 8 7 11 11 C 1.54087 * 103.77567 * 179.97438 * 10 9 8 12 12 O 1.45699 * 104.01095 * 0.02562 * 11 10 9 13 13 C 1.33781 * 109.47379 * 359.76905 * 12 11 10 14 14 O 1.21516 * 123.07480 * 180.23105 * 13 12 11 15 15 C 1.38087 * 119.96397 * 105.67160 * 4 2 1 16 16 N 1.46898 * 109.47141 * 119.99586 * 2 1 3 17 17 C 1.46902 * 111.00318 * 301.69364 * 16 2 1 18 18 C 1.46899 * 111.00107 * 177.73535 * 16 2 1 19 19 C 1.50696 * 109.47074 * 190.00489 * 18 16 2 20 20 O 1.21288 * 120.00385 * 359.97438 * 19 18 16 21 21 N 1.34785 * 119.99872 * 179.97438 * 19 18 16 22 22 C 1.37099 * 119.99952 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99900 * 0.02562 * 22 21 19 24 24 C 1.38949 * 119.99852 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00065 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47062 * 59.99473 * 26 24 22 28 28 H 1.48495 * 109.47008 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46671 * 299.99928 * 26 24 22 30 30 H 1.09004 * 109.46639 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47275 * 299.99936 * 1 2 3 32 32 H 1.08999 * 109.47303 * 60.00382 * 1 2 3 33 33 H 1.07995 * 119.93165 * 0.02562 * 5 4 2 34 34 H 1.07998 * 119.96132 * 180.02562 * 6 5 4 35 35 H 1.08007 * 120.03546 * 179.97438 * 7 6 5 36 36 H 1.08996 * 110.56367 * 298.53614 * 10 9 8 37 37 H 1.08998 * 110.56195 * 61.24571 * 10 9 8 38 38 H 1.09000 * 110.51664 * 118.63270 * 11 10 9 39 39 H 1.08998 * 110.52292 * 241.36852 * 11 10 9 40 40 H 1.08000 * 120.04013 * 0.02562 * 15 4 2 41 41 H 1.09003 * 109.46829 * 302.61380 * 17 16 2 42 42 H 1.08993 * 109.47582 * 62.61169 * 17 16 2 43 43 H 1.09007 * 109.47135 * 182.61712 * 17 16 2 44 44 H 1.08999 * 109.47019 * 70.00007 * 18 16 2 45 45 H 1.08998 * 109.46837 * 309.99785 * 18 16 2 46 46 H 0.96997 * 119.99946 * 0.02562 * 21 19 18 47 47 H 0.97002 * 120.00613 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.9522 -2.0886 -1.3134 6 6 2.4125 -2.7441 -2.4404 7 6 2.9546 -2.0239 -3.4871 8 6 3.0365 -0.6402 -3.4068 9 7 3.5846 0.0925 -4.4657 10 6 4.1090 -0.4750 -5.7174 11 6 4.5784 0.7592 -6.5116 12 8 4.2731 1.8809 -5.6332 13 6 3.7132 1.4257 -4.5067 14 8 3.3563 2.1544 -3.6021 15 6 2.5670 0.0159 -2.2762 16 7 2.0197 -0.6924 1.1995 17 6 1.5159 -0.0500 2.4208 18 6 3.4872 -0.7591 1.2066 19 6 3.9428 -1.6792 2.3097 20 8 3.1255 -2.2252 3.0204 21 7 5.2585 -1.8953 2.5067 22 6 5.6731 -2.7319 3.5106 23 1 4.9453 -3.2182 4.1433 24 6 7.0295 -2.9543 3.7139 25 7 7.9149 -2.3631 2.9437 26 14 7.5944 -4.0948 5.0813 27 1 7.0381 -5.4529 4.8545 28 1 9.0777 -4.1627 5.0881 29 1 7.1160 -3.5758 6.3878 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.5292 -2.6539 -0.4963 34 1 2.3481 -3.8204 -2.5024 35 1 3.3143 -2.5365 -4.3670 36 1 4.9476 -1.1409 -5.5141 37 1 3.3233 -1.0041 -6.2566 38 1 5.6501 0.7052 -6.7034 39 1 4.0256 0.8446 -7.4471 40 1 2.6256 1.0924 -2.2125 41 1 1.8151 0.9981 2.4299 42 1 0.4283 -0.1176 2.4448 43 1 1.9307 -0.5538 3.2939 44 1 3.8954 0.2378 1.3731 45 1 3.8382 -1.1401 0.2476 46 1 5.9121 -1.4583 1.9386 47 1 8.8619 -2.5186 3.0853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497124276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:01 Heat of formation + Delta-G solvation = -76.931663 kcal Electronic energy + Delta-G solvation = -30820.928778 eV Core-core repulsion = 26582.912896 eV Total energy + Delta-G solvation = -4238.015882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.97079 -40.96786 -40.02760 -38.59856 -38.22008 -36.43009 -35.86136 -33.31514 -33.10192 -31.84066 -30.81808 -30.00335 -28.79778 -27.12875 -25.69792 -25.11699 -24.77064 -23.09157 -22.35054 -21.16249 -20.73441 -19.85006 -18.84270 -18.50003 -18.09638 -17.76909 -17.45061 -16.92470 -16.60891 -16.39650 -16.18590 -15.83085 -15.55099 -15.33235 -15.19676 -15.16946 -14.95678 -14.82558 -14.50148 -14.28482 -13.78395 -13.63079 -13.47070 -13.39198 -13.14267 -13.07509 -12.90762 -12.84978 -12.64437 -12.51002 -12.41829 -12.25054 -12.11821 -11.88345 -11.76040 -11.44254 -11.33792 -11.15794 -10.28081 -10.00010 -9.77852 -9.25563 -8.99551 -8.45035 -5.94209 0.26125 0.38845 1.17947 1.40277 1.41512 1.52934 1.53439 2.04725 2.28415 2.42144 2.67563 2.88070 3.20916 3.22078 3.34544 3.48230 3.77442 3.92694 4.04381 4.15805 4.19498 4.25372 4.28076 4.35678 4.37698 4.46603 4.48729 4.54266 4.59510 4.63964 4.65655 4.68356 4.73042 4.84610 4.93170 5.09371 5.14485 5.31154 5.32741 5.39052 5.41614 5.52328 5.68432 5.89087 6.01828 6.07623 6.19731 6.21614 6.60605 6.73242 7.13129 7.55781 8.11273 8.72448 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.002909 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.684157 B = 9622.085710 C =11008.678351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.118 3.882 3 H 0.041 0.959 4 C -0.056 4.056 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.141 4.141 8 C 0.165 3.835 9 N -0.567 5.567 10 C 0.052 3.948 11 C 0.037 3.963 12 O -0.339 6.339 13 C 0.636 3.364 14 O -0.553 6.553 15 C -0.168 4.168 16 N -0.516 5.516 17 C 0.025 3.975 18 C 0.060 3.940 19 C 0.448 3.552 20 O -0.607 6.607 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.025 0.975 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.393 0.607 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 2.539 -24.108 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.011 3.989 3 H 0.059 0.941 4 C -0.057 4.057 5 C -0.141 4.141 6 C -0.111 4.111 7 C -0.161 4.161 8 C 0.073 3.927 9 N -0.304 5.304 10 C -0.069 4.069 11 C -0.036 4.036 12 O -0.248 6.248 13 C 0.392 3.608 14 O -0.440 6.440 15 C -0.189 4.189 16 N -0.241 5.241 17 C -0.123 4.123 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.493 6.493 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.564 5.564 26 Si 0.818 3.182 27 H -0.195 1.195 28 H -0.195 1.195 29 H -0.197 1.197 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.043 0.957 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.226 0.774 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.789 2.355 -23.348 25.059 hybrid contribution 1.215 0.748 0.651 1.569 sum -7.574 3.104 -22.697 24.128 Atomic orbital electron populations 1.21804 0.91377 1.03098 1.02622 1.20665 0.97265 0.94101 0.86917 0.94093 1.19578 0.97780 0.94136 0.94213 1.21142 1.00742 0.93680 0.98542 1.21277 0.96527 1.01123 0.92173 1.20979 1.03566 0.90032 1.01559 1.17420 0.97519 0.91196 0.86582 1.45445 1.60300 1.05666 1.18970 1.23459 1.03027 0.98074 0.82298 1.24895 1.06134 0.79260 0.93296 1.87300 1.73856 1.35738 1.27949 1.18701 0.77346 0.82281 0.82485 1.90925 1.54546 1.61341 1.37211 1.21324 1.02458 1.01518 0.93599 1.61661 1.06667 1.53332 1.02425 1.22489 1.01663 0.95718 0.92434 1.21650 0.89906 0.97512 0.98058 1.20509 0.82387 0.86005 0.87572 1.90449 1.53254 1.54572 1.51020 1.41939 1.05858 1.42371 1.31067 1.19646 0.92121 1.23558 1.10721 0.90043 1.26068 0.95088 0.99447 1.00758 1.69685 1.02455 1.44192 1.40070 0.84973 0.77263 0.78242 0.77758 1.19475 1.19548 1.19726 0.91567 0.91175 0.91087 0.86145 0.83022 0.81982 0.86024 0.85195 0.84636 0.84026 0.84963 0.95659 0.89366 0.92144 0.93047 0.88729 0.77408 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.83 71.98 0.64 -2.54 16 2 C 0.12 3.51 2.27 44.17 0.10 3.61 16 3 H 0.04 1.27 7.94 -2.38 -0.02 1.25 16 4 C -0.06 -1.63 3.43 -19.89 -0.07 -1.70 16 5 C -0.12 -3.36 8.61 22.29 0.19 -3.17 16 6 C -0.09 -1.99 10.04 22.25 0.22 -1.77 16 7 C -0.14 -2.61 9.49 22.39 0.21 -2.40 16 8 C 0.17 3.91 6.63 38.15 0.25 4.16 16 9 N -0.57 -11.13 3.16 -759.80 -2.40 -13.54 16 10 C 0.05 0.33 6.49 86.63 0.56 0.89 16 11 C 0.04 0.19 8.23 72.35 0.60 0.79 16 12 O -0.34 -6.57 11.09 -47.41 -0.53 -7.09 16 13 C 0.64 16.45 8.77 129.91 1.14 17.59 16 14 O -0.55 -19.39 14.75 19.63 0.29 -19.10 16 15 C -0.17 -4.94 8.93 22.39 0.20 -4.74 16 16 N -0.52 -18.32 3.87 -906.05 -3.51 -21.83 16 17 C 0.02 0.84 8.74 127.69 1.12 1.96 16 18 C 0.06 2.40 5.17 85.56 0.44 2.84 16 19 C 0.45 22.49 7.45 87.65 0.65 23.14 16 20 O -0.61 -34.08 13.93 -3.05 -0.04 -34.12 16 21 N -0.58 -30.95 5.29 -306.98 -1.62 -32.57 16 22 C -0.33 -19.21 9.68 84.04 0.81 -18.40 16 23 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -51.13 13.05 21.66 0.28 -50.84 16 26 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 H 0.07 1.61 8.08 -2.38 -0.02 1.60 16 31 H 0.07 1.55 6.43 -2.39 -0.02 1.54 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.12 3.67 7.90 -2.91 -0.02 3.65 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.16 1.64 7.31 -2.91 -0.02 1.62 16 36 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.13 4.48 5.18 -2.91 -0.02 4.47 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 2.56 6.42 -2.39 -0.02 2.54 16 43 H 0.06 2.53 5.80 -2.38 -0.01 2.52 16 44 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 45 H 0.09 3.66 6.31 -2.39 -0.02 3.65 16 46 H 0.39 20.53 7.90 -92.71 -0.73 19.79 16 47 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -80.15 384.03 2.32 -77.84 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.28 Total: 35.73 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 7.54 Total: 19.95 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -7.25 Total: -118.78 kcal Atomic # 8 Polarization: -60.04 SS G_CDS: -0.28 Total: -60.32 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -80.15 2.32 -77.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497124276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.905 kcal (2) G-P(sol) polarization free energy of solvation -80.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds