Wall clock time and date at job start Wed Apr 1 2020 05:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.54594 * 2 1 4 4 C 1.53107 * 109.50205 * 239.89303 * 2 1 3 5 5 N 1.47014 * 109.28882 * 183.19497 * 4 2 1 6 6 C 1.39842 * 110.99619 * 182.41529 * 5 4 2 7 7 C 1.38920 * 119.99793 * 359.72708 * 6 5 4 8 8 C 1.38031 * 119.99989 * 179.72421 * 7 6 5 9 9 C 1.38927 * 119.99482 * 0.55052 * 8 7 6 10 10 N 1.39898 * 119.99811 * 179.70365 * 9 8 7 11 11 C 1.34770 * 119.99631 * 213.38781 * 10 9 8 12 12 O 1.21397 * 120.00633 * 5.27976 * 11 10 9 13 13 C 1.49324 * 119.99729 * 185.27340 * 11 10 9 14 14 O 1.21367 * 120.00099 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99930 * 179.97438 * 13 11 10 16 16 C 1.46507 * 119.99780 * 180.02562 * 15 13 11 17 17 C 1.50705 * 109.46634 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00138 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00379 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47151 * 59.99851 * 21 19 17 23 23 H 1.48502 * 109.47213 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47167 * 299.99647 * 21 19 17 25 25 C 1.38929 * 120.00301 * 359.72109 * 9 8 7 26 26 C 1.38033 * 119.99598 * 0.02562 * 25 9 8 27 27 C 1.47093 * 110.70437 * 58.59983 * 5 4 2 28 28 C 1.53101 * 109.28293 * 301.40692 * 27 5 4 29 29 O 1.43008 * 109.50797 * 120.11530 * 2 1 3 30 30 H 1.09000 * 109.47273 * 180.10684 * 1 2 3 31 31 H 1.09004 * 109.46498 * 300.10571 * 1 2 3 32 32 H 1.08996 * 109.46926 * 60.10258 * 1 2 3 33 33 H 1.08999 * 109.50763 * 303.15185 * 4 2 1 34 34 H 1.09005 * 109.50523 * 63.24202 * 4 2 1 35 35 H 1.08005 * 119.99923 * 0.02562 * 7 6 5 36 36 H 1.08002 * 120.00017 * 180.25279 * 8 7 6 37 37 H 0.96999 * 119.99797 * 33.38532 * 10 9 8 38 38 H 0.96998 * 120.00034 * 0.02562 * 15 13 11 39 39 H 1.08996 * 109.47109 * 299.99976 * 16 15 13 40 40 H 1.09002 * 109.46991 * 60.00556 * 16 15 13 41 41 H 0.96996 * 120.00259 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00215 * 179.97438 * 25 9 8 43 43 H 1.07994 * 119.99927 * 180.02562 * 26 25 9 44 44 H 1.09003 * 109.49415 * 181.46334 * 27 5 4 45 45 H 1.09003 * 109.53687 * 61.37393 * 27 5 4 46 46 H 1.09002 * 109.50298 * 296.91813 * 28 27 5 47 47 H 1.08999 * 109.50965 * 176.78492 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2485 5 7 3.5092 -0.7885 -1.2056 6 6 4.0180 -1.3958 -2.3580 7 6 3.1515 -1.8466 -3.3458 8 6 3.6539 -2.4410 -4.4858 9 6 5.0255 -2.5987 -4.6400 10 7 5.5344 -3.2067 -5.7926 11 6 6.6523 -3.9561 -5.7215 12 8 7.1637 -4.1829 -4.6441 13 6 7.2619 -4.5077 -6.9681 14 8 6.7509 -4.2808 -8.0453 15 7 8.3801 -5.2567 -6.8971 16 6 8.9784 -5.7974 -8.1203 17 6 10.2094 -6.5924 -7.7682 18 1 10.5152 -6.6858 -6.7367 19 6 10.9452 -7.2002 -8.7632 20 7 10.5726 -7.0868 -10.0194 21 14 12.4707 -8.1862 -8.3269 22 1 12.0961 -9.3040 -7.4238 23 1 13.0773 -8.7342 -9.5667 24 1 13.4511 -7.3048 -7.6434 25 6 5.8918 -2.1530 -3.6496 26 6 5.3895 -1.5539 -2.5120 27 6 3.9638 -1.4885 0.0055 28 6 3.4335 -0.7570 1.2415 29 8 2.0076 -0.6763 1.1660 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3632 0.5155 0.8891 32 1 -0.3633 0.5122 -0.8909 33 1 1.6330 -1.7343 -1.2761 34 1 1.7266 -0.1798 -2.1391 35 1 2.0849 -1.7276 -3.2240 36 1 2.9804 -2.7878 -5.2556 37 1 5.0826 -3.0889 -6.6429 38 1 8.7887 -5.4378 -6.0362 39 1 8.2590 -6.4452 -8.6211 40 1 9.2526 -4.9773 -8.7839 41 1 11.0905 -7.5142 -10.7194 42 1 6.9580 -2.2760 -3.7693 43 1 6.0629 -1.2071 -1.7422 44 1 5.0535 -1.5023 0.0304 45 1 3.5871 -2.5114 -0.0016 46 1 3.8535 0.2482 1.2776 47 1 3.7201 -1.3045 2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787595901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:02 Heat of formation + Delta-G solvation = -73.668079 kcal Electronic energy + Delta-G solvation = -29210.370163 eV Core-core repulsion = 24972.495801 eV Total energy + Delta-G solvation = -4237.874362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.10840 -40.45682 -38.97789 -37.95269 -36.30668 -34.72285 -33.90230 -33.43004 -32.39307 -31.27658 -29.92280 -28.34899 -27.67620 -26.30541 -24.60975 -23.74704 -22.86462 -22.13649 -21.50001 -20.68016 -19.85703 -18.73238 -17.94001 -17.20513 -16.90784 -16.49733 -16.08129 -15.86012 -15.64110 -15.58000 -15.27196 -15.04567 -14.89488 -14.43763 -14.33187 -14.19518 -13.87945 -13.56084 -13.17927 -13.14428 -12.89765 -12.78906 -12.62699 -12.37099 -12.09573 -12.07262 -11.94124 -11.69632 -11.53056 -11.25873 -11.05385 -11.03040 -10.92182 -10.63399 -10.35089 -10.09932 -9.52459 -9.46389 -9.24735 -9.06923 -8.85060 -8.14584 -7.78959 -6.23965 -4.31660 0.94847 1.18455 1.82547 2.62451 3.13373 3.23633 3.28076 3.28275 3.30425 3.50650 3.71383 4.03582 4.25244 4.30434 4.38888 4.44707 4.60083 4.69287 4.70480 4.74917 4.92542 5.00205 5.01648 5.10092 5.11920 5.12685 5.14192 5.23274 5.29671 5.35625 5.39813 5.51866 5.63388 5.72158 5.79576 5.89357 6.13904 6.27059 6.47348 6.60860 6.70278 6.92073 7.00947 7.05564 7.19916 7.33451 7.52655 7.82713 7.85733 8.34540 8.53007 8.79784 9.34717 10.85986 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028457 B = 0.001655 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.692446 B =16910.860773 C =17681.594472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.019 3.981 5 N -0.486 5.486 6 C 0.088 3.912 7 C -0.148 4.148 8 C -0.117 4.117 9 C 0.129 3.871 10 N -0.651 5.651 11 C 0.508 3.492 12 O -0.506 6.506 13 C 0.491 3.509 14 O -0.536 6.536 15 N -0.670 5.670 16 C 0.246 3.754 17 C -0.548 4.548 18 H 0.066 0.934 19 C 0.066 3.934 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.095 4.095 26 C -0.115 4.115 27 C 0.018 3.982 28 C 0.064 3.936 29 O -0.382 6.382 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.404 0.596 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.268 0.732 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.008 15.079 20.090 31.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.030 3.970 3 H 0.086 0.914 4 C -0.109 4.109 5 N -0.202 5.202 6 C -0.009 4.009 7 C -0.169 4.169 8 C -0.138 4.138 9 C 0.034 3.966 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.379 6.379 13 C 0.269 3.731 14 O -0.415 6.415 15 N -0.319 5.319 16 C 0.126 3.874 17 C -0.586 4.586 18 H 0.084 0.916 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.734 3.266 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.116 4.116 26 C -0.136 4.136 27 C -0.108 4.108 28 C -0.013 4.013 29 O -0.301 6.301 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.260 0.740 38 H 0.239 0.761 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -18.821 15.385 20.051 31.512 hybrid contribution 0.759 -1.207 -0.254 1.448 sum -18.062 14.178 19.797 30.318 Atomic orbital electron populations 1.21756 0.92443 1.03191 1.02909 1.22201 0.95129 0.95651 0.84015 0.91356 1.23020 0.86706 1.01156 0.99983 1.59452 1.09624 1.49741 1.01427 1.18879 0.93536 0.96344 0.92139 1.21038 0.99428 1.01424 0.95043 1.20784 0.93000 1.01412 0.98559 1.17738 0.92300 0.97691 0.88837 1.43251 1.27092 1.48402 1.11012 1.20891 0.80846 0.78494 0.90633 1.90742 1.60814 1.56650 1.29736 1.19681 0.83379 0.81915 0.88103 1.90739 1.62324 1.59420 1.29020 1.46428 1.24106 1.47428 1.13931 1.19357 0.93054 0.94293 0.80662 1.21162 1.09905 1.33405 0.94152 0.91586 1.24935 0.98083 0.96131 0.94678 1.69954 1.39500 1.43235 0.99514 0.86414 0.82202 0.80136 0.77846 1.19968 1.21011 1.19954 1.21082 1.00619 0.96646 0.93210 1.20627 0.93198 1.01231 0.98509 1.22987 1.01970 0.96619 0.89199 1.22694 0.80967 1.00517 0.97129 1.88007 1.21028 1.78341 1.42720 0.91694 0.91352 0.90724 0.92626 0.88880 0.85256 0.85282 0.73950 0.76078 0.94682 0.94664 0.92250 0.84284 0.85372 0.88751 0.92811 0.92041 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.57 37.16 0.36 -0.36 16 2 C 0.09 0.59 3.43 -26.68 -0.09 0.50 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.02 0.13 3.61 -3.71 -0.01 0.12 16 5 N -0.49 -4.19 4.78 -170.67 -0.82 -5.01 16 6 C 0.09 0.89 5.64 -83.70 -0.47 0.41 16 7 C -0.15 -1.40 8.81 -39.40 -0.35 -1.75 16 8 C -0.12 -1.20 9.96 -39.40 -0.39 -1.59 16 9 C 0.13 1.62 6.28 -83.67 -0.53 1.10 16 10 N -0.65 -8.84 5.33 -10.26 -0.05 -8.90 16 11 C 0.51 8.48 7.62 -11.65 -0.09 8.39 16 12 O -0.51 -9.01 14.16 5.46 0.08 -8.93 16 13 C 0.49 9.69 7.88 -11.64 -0.09 9.60 16 14 O -0.54 -11.69 16.48 5.48 0.09 -11.60 16 15 N -0.67 -14.28 5.54 -61.94 -0.34 -14.62 16 16 C 0.25 6.33 5.43 -5.19 -0.03 6.30 16 17 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 18 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 21 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 C -0.09 -1.21 8.65 -39.40 -0.34 -1.55 16 26 C -0.11 -1.24 9.20 -39.40 -0.36 -1.61 16 27 C 0.02 0.14 5.41 -3.67 -0.02 0.12 16 28 C 0.06 0.43 7.01 37.21 0.26 0.69 16 29 O -0.38 -3.20 10.47 -35.23 -0.37 -3.57 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.42 7.52 -51.93 -0.39 0.03 16 34 H 0.09 0.58 7.24 -51.93 -0.38 0.20 16 35 H 0.13 0.95 5.80 -52.48 -0.30 0.64 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.42 5.08 8.30 -40.82 -0.34 4.74 16 38 H 0.40 7.98 7.79 -40.82 -0.32 7.66 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.14 1.93 6.41 -52.49 -0.34 1.60 16 43 H 0.13 1.19 7.20 -52.49 -0.38 0.81 16 44 H 0.09 0.65 6.86 -51.93 -0.36 0.29 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -31.57 388.50 -8.98 -40.55 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.56 Total: 8.18 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.57 Total: 7.08 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.48 Total: -53.18 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.20 Total: -24.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.57 -8.98 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787595901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.121 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds