Wall clock time and date at job start Wed Apr 1 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.54594 * 2 1 4 4 C 1.53107 * 109.50205 * 239.89303 * 2 1 3 5 5 N 1.47014 * 109.28882 * 183.19497 * 4 2 1 6 6 C 1.39842 * 110.99619 * 182.41529 * 5 4 2 7 7 C 1.38920 * 119.99793 * 359.72708 * 6 5 4 8 8 C 1.38031 * 119.99989 * 179.72421 * 7 6 5 9 9 C 1.38927 * 119.99482 * 0.55052 * 8 7 6 10 10 N 1.39898 * 119.99811 * 179.70365 * 9 8 7 11 11 C 1.34770 * 119.99631 * 213.38781 * 10 9 8 12 12 O 1.21397 * 120.00633 * 5.27976 * 11 10 9 13 13 C 1.49324 * 119.99729 * 185.27340 * 11 10 9 14 14 O 1.21367 * 120.00099 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99930 * 179.97438 * 13 11 10 16 16 C 1.46507 * 119.99780 * 180.02562 * 15 13 11 17 17 C 1.50705 * 109.46634 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00138 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99543 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00379 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99933 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47151 * 59.99851 * 21 19 17 23 23 H 1.48502 * 109.47213 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47167 * 299.99647 * 21 19 17 25 25 C 1.38929 * 120.00301 * 359.72109 * 9 8 7 26 26 C 1.38033 * 119.99598 * 0.02562 * 25 9 8 27 27 C 1.47093 * 110.70437 * 58.59983 * 5 4 2 28 28 C 1.53101 * 109.28293 * 301.40692 * 27 5 4 29 29 O 1.43008 * 109.50797 * 120.11530 * 2 1 3 30 30 H 1.09000 * 109.47273 * 180.10684 * 1 2 3 31 31 H 1.09004 * 109.46498 * 300.10571 * 1 2 3 32 32 H 1.08996 * 109.46926 * 60.10258 * 1 2 3 33 33 H 1.08999 * 109.50763 * 303.15185 * 4 2 1 34 34 H 1.09005 * 109.50523 * 63.24202 * 4 2 1 35 35 H 1.08005 * 119.99923 * 0.02562 * 7 6 5 36 36 H 1.08002 * 120.00017 * 180.25279 * 8 7 6 37 37 H 0.96999 * 119.99797 * 33.38532 * 10 9 8 38 38 H 0.96998 * 120.00034 * 0.02562 * 15 13 11 39 39 H 1.08996 * 109.47109 * 299.99976 * 16 15 13 40 40 H 1.09002 * 109.46991 * 60.00556 * 16 15 13 41 41 H 0.96996 * 120.00259 * 179.97438 * 20 19 17 42 42 H 1.07995 * 120.00215 * 179.97438 * 25 9 8 43 43 H 1.07994 * 119.99927 * 180.02562 * 26 25 9 44 44 H 1.09003 * 109.49415 * 181.46334 * 27 5 4 45 45 H 1.09003 * 109.53687 * 61.37393 * 27 5 4 46 46 H 1.09002 * 109.50298 * 296.91813 * 28 27 5 47 47 H 1.08999 * 109.50965 * 176.78492 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0411 -0.7239 -1.2485 5 7 3.5092 -0.7885 -1.2056 6 6 4.0180 -1.3958 -2.3580 7 6 3.1515 -1.8466 -3.3458 8 6 3.6539 -2.4410 -4.4858 9 6 5.0255 -2.5987 -4.6400 10 7 5.5344 -3.2067 -5.7926 11 6 6.6523 -3.9561 -5.7215 12 8 7.1637 -4.1829 -4.6441 13 6 7.2619 -4.5077 -6.9681 14 8 6.7509 -4.2808 -8.0453 15 7 8.3801 -5.2567 -6.8971 16 6 8.9784 -5.7974 -8.1203 17 6 10.2094 -6.5924 -7.7682 18 1 10.5152 -6.6858 -6.7367 19 6 10.9452 -7.2002 -8.7632 20 7 10.5726 -7.0868 -10.0194 21 14 12.4707 -8.1862 -8.3269 22 1 12.0961 -9.3040 -7.4238 23 1 13.0773 -8.7342 -9.5667 24 1 13.4511 -7.3048 -7.6434 25 6 5.8918 -2.1530 -3.6496 26 6 5.3895 -1.5539 -2.5120 27 6 3.9638 -1.4885 0.0055 28 6 3.4335 -0.7570 1.2415 29 8 2.0076 -0.6763 1.1660 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3632 0.5155 0.8891 32 1 -0.3633 0.5122 -0.8909 33 1 1.6330 -1.7343 -1.2761 34 1 1.7266 -0.1798 -2.1391 35 1 2.0849 -1.7276 -3.2240 36 1 2.9804 -2.7878 -5.2556 37 1 5.0826 -3.0889 -6.6429 38 1 8.7887 -5.4378 -6.0362 39 1 8.2590 -6.4452 -8.6211 40 1 9.2526 -4.9773 -8.7839 41 1 11.0905 -7.5142 -10.7194 42 1 6.9580 -2.2760 -3.7693 43 1 6.0629 -1.2071 -1.7422 44 1 5.0535 -1.5023 0.0304 45 1 3.5871 -2.5114 -0.0016 46 1 3.8535 0.2482 1.2776 47 1 3.7201 -1.3045 2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787595901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:55:01 Heat of formation + Delta-G solvation = -96.895904 kcal Electronic energy + Delta-G solvation = -29211.377397 eV Core-core repulsion = 24972.495801 eV Total energy + Delta-G solvation = -4238.881596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.17171 -41.40954 -40.13081 -39.16953 -37.25397 -36.37911 -35.11098 -34.34787 -33.93286 -32.08033 -30.73061 -29.77044 -28.84803 -27.13628 -26.00448 -24.52329 -24.19183 -23.24281 -22.34497 -21.62354 -21.12212 -20.17039 -18.88554 -18.29062 -18.16305 -17.49248 -17.27299 -17.12387 -16.90724 -16.55858 -16.48866 -15.98095 -15.94484 -15.57861 -15.37386 -15.15282 -15.01330 -14.82439 -14.43146 -14.07733 -13.97375 -13.82131 -13.67180 -13.39932 -13.17893 -13.03643 -12.94372 -12.76745 -12.70990 -12.62058 -12.32038 -12.22712 -12.11246 -11.56826 -11.56686 -11.51804 -10.84452 -10.78453 -10.71094 -10.23105 -10.07222 -9.98670 -8.64464 -8.31935 -6.48371 -0.10947 0.35248 0.54298 1.26512 1.44478 1.46949 1.55648 2.05007 2.35489 2.47170 2.69353 2.77151 2.83083 3.03346 3.41552 3.71938 3.73852 3.88808 3.92186 4.05513 4.11024 4.18102 4.29204 4.38186 4.41907 4.46756 4.53701 4.62118 4.66370 4.79390 4.86234 4.94832 4.96298 4.99832 5.05606 5.13140 5.16061 5.21874 5.25779 5.29786 5.32533 5.50105 5.63967 5.76563 5.87321 5.95607 6.17055 6.19174 6.46402 6.56688 6.72995 6.97554 7.24650 8.79367 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028457 B = 0.001655 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.692446 B =16910.860773 C =17681.594472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.018 3.982 5 N -0.491 5.491 6 C 0.093 3.907 7 C -0.147 4.147 8 C -0.107 4.107 9 C 0.100 3.900 10 N -0.632 5.632 11 C 0.519 3.481 12 O -0.519 6.519 13 C 0.493 3.507 14 O -0.558 6.558 15 N -0.672 5.672 16 C 0.262 3.738 17 C -0.564 4.564 18 H 0.080 0.920 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.983 3.017 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.264 1.264 25 C -0.109 4.109 26 C -0.121 4.121 27 C 0.018 3.982 28 C 0.064 3.936 29 O -0.400 6.400 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.430 0.570 38 H 0.413 0.587 39 H 0.006 0.994 40 H 0.006 0.994 41 H 0.271 0.729 42 H 0.121 0.879 43 H 0.139 0.861 44 H 0.100 0.900 45 H 0.045 0.955 46 H 0.066 0.934 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 15.589 21.964 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.086 0.914 4 C -0.109 4.109 5 N -0.207 5.207 6 C -0.005 4.005 7 C -0.168 4.168 8 C -0.127 4.127 9 C 0.007 3.993 10 N -0.279 5.279 11 C 0.301 3.699 12 O -0.394 6.394 13 C 0.273 3.727 14 O -0.438 6.438 15 N -0.322 5.322 16 C 0.141 3.859 17 C -0.602 4.602 18 H 0.098 0.902 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.129 4.129 26 C -0.142 4.142 27 C -0.107 4.107 28 C -0.012 4.012 29 O -0.319 6.319 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.124 0.876 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.269 0.731 38 H 0.249 0.751 39 H 0.024 0.976 40 H 0.024 0.976 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.157 0.843 44 H 0.118 0.882 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.896 15.935 21.967 33.650 hybrid contribution 0.929 -1.233 -0.762 1.721 sum -18.967 14.702 21.204 32.024 Atomic orbital electron populations 1.21767 0.91138 1.03248 1.03818 1.22323 0.96170 0.95371 0.83355 0.91367 1.23109 0.85611 1.01361 1.00827 1.59446 1.10666 1.49377 1.01201 1.19064 0.93346 0.95287 0.92767 1.21347 1.00691 1.00474 0.94303 1.21029 0.92118 1.00347 0.99234 1.17922 0.93401 0.99419 0.88606 1.43066 1.25713 1.47103 1.12050 1.20067 0.81833 0.79205 0.88814 1.90745 1.61587 1.57607 1.29453 1.20203 0.82527 0.80806 0.89128 1.90718 1.62731 1.59880 1.30439 1.46156 1.24933 1.48193 1.12919 1.18848 0.92565 0.92779 0.81734 1.21538 1.10182 1.33479 0.94982 0.90229 1.25955 1.01467 0.97099 0.94401 1.70092 1.41084 1.44315 1.00743 0.85238 0.77878 0.78603 0.77717 1.18931 1.20724 1.18896 1.21036 0.99927 0.97775 0.94203 1.20721 0.94033 1.01219 0.98185 1.23025 1.02379 0.96154 0.89190 1.22791 0.80336 1.00875 0.97245 1.87993 1.21836 1.78601 1.43493 0.92017 0.91350 0.88963 0.92735 0.87607 0.82705 0.83022 0.73095 0.75056 0.97613 0.97626 0.92032 0.86083 0.84296 0.88194 0.93705 0.91620 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.57 71.98 0.69 -0.41 16 2 C 0.09 0.98 3.43 30.63 0.10 1.08 16 3 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 4 C 0.02 0.21 3.61 86.32 0.31 0.52 16 5 N -0.49 -7.45 4.78 -693.88 -3.32 -10.76 16 6 C 0.09 1.68 5.64 38.19 0.22 1.90 16 7 C -0.15 -2.38 8.81 22.38 0.20 -2.19 16 8 C -0.11 -1.95 9.96 22.39 0.22 -1.73 16 9 C 0.10 2.42 6.28 38.18 0.24 2.66 16 10 N -0.63 -16.88 5.33 -304.72 -1.62 -18.51 16 11 C 0.52 17.38 7.62 87.23 0.66 18.05 16 12 O -0.52 -18.56 14.16 -3.39 -0.05 -18.61 16 13 C 0.49 19.93 7.88 87.23 0.69 20.62 16 14 O -0.56 -24.98 16.48 -3.30 -0.05 -25.04 16 15 N -0.67 -29.44 5.54 -468.24 -2.59 -32.04 16 16 C 0.26 14.02 5.43 85.63 0.46 14.49 16 17 C -0.56 -30.55 9.28 25.60 0.24 -30.31 16 18 H 0.08 4.00 7.60 -2.91 -0.02 3.97 16 19 C 0.01 0.62 5.46 84.65 0.46 1.08 16 20 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 21 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 25 C -0.11 -2.73 8.65 22.39 0.19 -2.54 16 26 C -0.12 -2.49 9.20 22.38 0.21 -2.29 16 27 C 0.02 0.25 5.41 86.30 0.47 0.71 16 28 C 0.06 0.75 7.01 72.02 0.50 1.25 16 29 O -0.40 -6.02 10.47 -148.98 -1.56 -7.58 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.68 7.52 -2.39 -0.02 0.66 16 34 H 0.11 0.97 7.24 -2.38 -0.02 0.95 16 35 H 0.16 1.70 5.80 -2.91 -0.02 1.69 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.43 10.05 8.30 -92.71 -0.77 9.28 16 38 H 0.41 16.56 7.79 -92.71 -0.72 15.83 16 39 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.12 3.45 6.41 -2.91 -0.02 3.43 16 43 H 0.14 2.45 7.20 -2.91 -0.02 2.42 16 44 H 0.10 1.22 6.86 -2.39 -0.02 1.21 16 45 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -68.70 388.50 -1.48 -70.19 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.47 Total: 29.17 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: 5.87 Total: 22.90 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -7.25 Total: -115.14 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -1.66 Total: -51.23 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -68.70 -1.48 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787595901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.711 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds