Wall clock time and date at job start Wed Apr 1 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.51346 * 2 1 4 4 C 1.53746 * 109.43535 * 120.29824 * 2 1 3 5 5 N 1.47163 * 108.28130 * 172.90520 * 4 2 1 6 6 C 1.34782 * 121.05272 * 128.89178 * 5 4 2 7 7 O 1.21576 * 120.00351 * 174.69716 * 6 5 4 8 8 N 1.34779 * 119.99810 * 354.69597 * 6 5 4 9 9 C 1.39457 * 119.99996 * 185.60348 * 8 6 5 10 10 C 1.38647 * 119.64637 * 185.38535 * 9 8 6 11 11 C 1.40827 * 118.67095 * 180.02562 * 10 9 8 12 12 C 1.41540 * 120.99649 * 179.72745 * 11 10 9 13 13 H 1.08003 * 120.00090 * 145.91949 * 12 11 10 14 14 C 1.40032 * 120.00150 * 325.92570 * 12 11 10 15 15 N 1.30741 * 119.99761 * 4.18306 * 14 12 11 16 16 Si 1.86801 * 120.00206 * 184.18065 * 14 12 11 17 17 H 1.48499 * 109.46668 * 90.00043 * 16 14 12 18 18 H 1.48498 * 109.47238 * 209.99803 * 16 14 12 19 19 H 1.48496 * 109.46969 * 330.00194 * 16 14 12 20 20 C 1.41163 * 118.00641 * 359.97438 * 11 10 9 21 21 C 1.36591 * 119.12778 * 0.02562 * 20 11 10 22 22 N 1.32067 * 121.26063 * 359.97438 * 21 20 11 23 23 C 1.47284 * 117.89532 * 308.61754 * 5 4 2 24 24 C 1.52647 * 108.38289 * 49.83938 * 23 5 4 25 25 C 1.53981 * 110.13327 * 71.75358 * 24 23 5 26 26 C 1.54606 * 103.87556 * 118.23618 * 25 24 23 27 27 O 1.44471 * 104.82175 * 23.88937 * 26 25 24 28 28 C 1.44558 * 105.36952 * 319.84975 * 27 26 25 29 29 O 1.42203 * 110.84321 * 309.27746 * 24 23 5 30 30 H 1.09004 * 109.47508 * 180.10441 * 1 2 3 31 31 H 1.09009 * 109.47141 * 300.10377 * 1 2 3 32 32 H 1.09000 * 109.46896 * 60.09915 * 1 2 3 33 33 H 1.09001 * 109.79719 * 53.23888 * 4 2 1 34 34 H 1.08997 * 109.69972 * 292.51190 * 4 2 1 35 35 H 0.97000 * 119.99812 * 5.60193 * 8 6 5 36 36 H 1.07994 * 120.66719 * 0.02562 * 10 9 8 37 37 H 0.97002 * 120.00310 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.43687 * 179.97438 * 20 11 10 39 39 H 1.07998 * 119.37340 * 179.97438 * 21 20 11 40 40 H 1.08998 * 109.68332 * 169.56636 * 23 5 4 41 41 H 1.09002 * 109.68067 * 290.07614 * 23 5 4 42 42 H 1.09001 * 110.54648 * 236.82905 * 25 24 23 43 43 H 1.08995 * 110.55140 * 359.48785 * 25 24 23 44 44 H 1.08994 * 110.37587 * 142.72810 * 26 25 24 45 45 H 1.09004 * 110.36408 * 265.05802 * 26 25 24 46 46 H 1.09006 * 110.38984 * 281.16996 * 28 27 26 47 47 H 1.09005 * 110.38776 * 158.78499 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0416 -0.7315 1.2518 5 7 3.5028 -0.8673 1.1422 6 6 4.3141 -0.4840 2.1480 7 8 5.5097 -0.6928 2.0779 8 7 3.7998 0.1309 3.2315 9 6 4.6491 0.6319 4.2177 10 6 4.1120 1.1623 5.3806 11 6 4.9885 1.6629 6.3626 12 6 4.4933 2.2204 7.5657 13 1 5.0465 2.0984 8.4853 14 6 3.2860 2.9299 7.5638 15 7 2.5755 3.0080 6.4691 16 14 2.6908 3.7648 9.1253 17 1 3.2189 5.1518 9.1770 18 1 1.2063 3.7998 9.1329 19 1 3.1743 3.0066 10.3070 20 6 6.3755 1.5969 6.1088 21 6 6.8112 1.0562 4.9326 22 7 5.9606 0.5959 4.0333 23 6 4.0504 -1.4412 -0.0988 24 6 3.4247 -0.7105 -1.2840 25 6 3.9897 0.7184 -1.3840 26 6 4.6912 0.7442 -2.7615 27 8 4.0383 -0.2917 -3.5282 28 6 3.8399 -1.3852 -2.6037 29 8 2.0079 -0.6764 -1.1667 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3634 0.5155 0.8891 32 1 -0.3633 0.5123 -0.8909 33 1 1.5856 -1.7195 1.3142 34 1 1.7933 -0.1537 2.1421 35 1 2.8389 0.2251 3.3253 36 1 3.0429 1.1909 5.5305 37 1 1.7394 3.4998 6.4676 38 1 7.0829 1.9698 6.8348 39 1 7.8715 1.0042 4.7341 40 1 5.1324 -1.3113 -0.1171 41 1 3.8072 -2.5024 -0.1511 42 1 3.1838 1.4516 -1.3515 43 1 4.7062 0.9034 -0.5838 44 1 4.5533 1.7139 -3.2395 45 1 5.7527 0.5223 -2.6508 46 1 4.7670 -1.9426 -2.4701 47 1 3.0475 -2.0439 -2.9592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871730442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:42 Heat of formation + Delta-G solvation = -57.522185 kcal Electronic energy + Delta-G solvation = -31473.246380 eV Core-core repulsion = 27236.072156 eV Total energy + Delta-G solvation = -4237.174224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.12543 -39.65552 -38.30948 -37.64165 -34.65951 -34.49402 -33.85222 -33.24060 -30.91203 -30.53373 -29.55968 -28.57070 -26.79152 -26.04781 -25.51245 -23.24756 -22.21410 -22.00067 -21.67427 -20.11741 -19.21435 -18.22561 -17.67840 -17.42308 -16.48522 -16.27590 -15.81440 -15.65808 -15.33279 -15.12328 -14.78182 -14.53785 -14.23617 -14.22357 -14.13554 -13.67788 -13.56000 -12.91838 -12.87853 -12.72420 -12.65067 -12.58498 -12.30746 -12.14931 -11.85130 -11.66616 -11.55253 -11.48090 -11.21635 -11.18452 -10.95278 -10.77739 -10.34126 -10.20063 -10.15379 -9.98916 -9.78406 -9.65098 -9.42924 -8.48873 -7.94144 -7.80680 -7.08619 -6.72472 -4.67568 2.60688 2.66794 2.78555 3.00310 3.04438 3.19099 3.23659 3.68071 3.73339 3.85826 4.02891 4.25341 4.45684 4.55357 4.61192 4.68787 4.77204 4.83560 4.96737 5.05530 5.13858 5.21929 5.28689 5.41704 5.44815 5.50991 5.55686 5.59948 5.60988 5.64207 5.70142 5.81281 5.84912 5.93941 6.32327 6.49038 6.53151 6.54527 6.73629 6.91013 6.98846 7.09348 7.13637 7.34332 7.44330 7.84700 8.02253 8.23720 8.41788 8.68172 8.74798 9.02349 9.62946 10.12427 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002826 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.159727 B = 9905.179141 C =10942.430017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.068 0.932 4 C 0.082 3.918 5 N -0.638 5.638 6 C 0.699 3.301 7 O -0.529 6.529 8 N -0.666 5.666 9 C 0.349 3.651 10 C -0.232 4.232 11 C 0.142 3.858 12 C -0.459 4.459 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.806 5.806 16 Si 0.918 3.082 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.274 4.274 21 C 0.115 3.885 22 N -0.548 5.548 23 C 0.116 3.884 24 C 0.075 3.925 25 C -0.179 4.179 26 C 0.048 3.952 27 O -0.370 6.370 28 C 0.063 3.937 29 O -0.359 6.359 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.403 0.597 36 H 0.135 0.865 37 H 0.279 0.721 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 -4.997 -13.388 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.042 4.042 5 N -0.379 5.379 6 C 0.400 3.600 7 O -0.400 6.400 8 N -0.316 5.316 9 C 0.123 3.877 10 C -0.258 4.258 11 C 0.134 3.866 12 C -0.491 4.491 13 H 0.099 0.901 14 C -0.143 4.143 15 N -0.434 5.434 16 Si 0.743 3.257 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.298 4.298 21 C -0.039 4.039 22 N -0.267 5.267 23 C -0.007 4.007 24 C 0.034 3.966 25 C -0.217 4.217 26 C -0.029 4.029 27 O -0.289 6.289 28 C -0.014 4.014 29 O -0.278 6.278 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.240 0.760 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.876 -5.501 -14.698 16.434 hybrid contribution -1.066 1.120 2.018 2.542 sum -5.943 -4.381 -12.681 14.673 Atomic orbital electron populations 1.21741 0.91995 1.03281 1.03081 1.22622 0.95449 0.95840 0.84761 0.91415 1.22453 0.81151 1.01649 0.98956 1.47407 1.05565 1.68193 1.16763 1.15932 0.85136 0.79000 0.79884 1.91001 1.12414 1.58008 1.78577 1.42730 1.09413 1.59257 1.20200 1.18030 0.88205 0.94635 0.86826 1.21758 1.01697 1.07828 0.94526 1.17612 0.90106 0.86424 0.92468 1.19528 1.04515 1.29783 0.95269 0.90126 1.25902 0.95363 0.95435 0.97571 1.69707 1.12272 1.33730 1.27654 0.86149 0.78066 0.79976 0.81540 1.19434 1.20218 1.18575 1.21798 0.96618 1.11583 0.99793 1.21487 0.97226 0.94955 0.90188 1.67159 1.01243 1.24880 1.33423 1.21909 1.00504 0.96746 0.81589 1.22798 0.82442 0.95317 0.96012 1.23522 1.01859 0.97266 0.99020 1.23419 0.96393 0.92487 0.90599 1.89175 1.79956 1.26259 1.33468 1.23266 1.01288 0.90271 0.86606 1.87868 1.19298 1.77501 1.43104 0.91488 0.90462 0.91400 0.90436 0.89370 0.75979 0.84706 0.91015 0.87851 0.85924 0.87688 0.90958 0.89842 0.89241 0.88871 0.91725 0.90260 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.57 37.16 0.36 -0.80 16 2 C 0.07 0.75 3.13 -26.34 -0.08 0.67 16 3 H 0.07 0.77 6.50 -51.93 -0.34 0.43 16 4 C 0.08 0.92 5.94 -3.29 -0.02 0.90 16 5 N -0.64 -9.15 2.90 -178.00 -0.52 -9.66 16 6 C 0.70 13.38 8.27 -86.91 -0.72 12.66 16 7 O -0.53 -12.19 14.15 5.30 0.07 -12.12 16 8 N -0.67 -13.07 5.31 -15.86 -0.08 -13.15 16 9 C 0.35 8.37 7.41 -154.68 -1.15 7.22 16 10 C -0.23 -5.79 8.61 -38.45 -0.33 -6.12 16 11 C 0.14 3.68 5.58 -106.55 -0.59 3.09 16 12 C -0.46 -11.63 9.11 -37.65 -0.34 -11.98 16 13 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 14 C 0.07 1.76 5.44 -17.34 -0.09 1.67 16 15 N -0.81 -19.51 10.65 55.55 0.59 -18.92 16 16 Si 0.92 17.90 29.56 -169.99 -5.03 12.88 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.27 -6.62 9.85 -39.07 -0.38 -7.00 16 21 C 0.12 2.73 11.10 -18.05 -0.20 2.53 16 22 N -0.55 -13.84 7.90 -12.76 -0.10 -13.95 16 23 C 0.12 1.45 4.94 -3.79 -0.02 1.43 16 24 C 0.08 0.85 1.05 -89.81 -0.09 0.75 16 25 C -0.18 -2.08 5.77 -25.38 -0.15 -2.23 16 26 C 0.05 0.50 7.65 38.00 0.29 0.79 16 27 O -0.37 -4.38 11.65 -35.23 -0.41 -4.80 16 28 C 0.06 0.63 6.93 37.64 0.26 0.89 16 29 O -0.36 -4.18 9.83 -35.23 -0.35 -4.53 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.94 5.66 -51.93 -0.29 0.64 16 35 H 0.40 6.61 6.21 -40.82 -0.25 6.36 16 36 H 0.14 3.35 6.22 -52.49 -0.33 3.02 16 37 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 38 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 40 H 0.10 1.44 7.06 -51.93 -0.37 1.08 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.98 6.63 -51.93 -0.34 0.64 16 43 H 0.09 1.21 7.67 -51.93 -0.40 0.81 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 47 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -31.79 374.73 -9.93 -41.72 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.50 Total: 12.40 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -3.27 Total: 4.47 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.11 Total: -55.68 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.68 Total: -21.44 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.79 -9.93 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.797 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds