Wall clock time and date at job start Wed Apr 1 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.51346 * 2 1 4 4 C 1.53746 * 109.43535 * 120.29824 * 2 1 3 5 5 N 1.47163 * 108.28130 * 172.90520 * 4 2 1 6 6 C 1.34782 * 121.05272 * 128.89178 * 5 4 2 7 7 O 1.21576 * 120.00351 * 174.69716 * 6 5 4 8 8 N 1.34779 * 119.99810 * 354.69597 * 6 5 4 9 9 C 1.39457 * 119.99996 * 185.60348 * 8 6 5 10 10 C 1.38647 * 119.64637 * 185.38535 * 9 8 6 11 11 C 1.40827 * 118.67095 * 180.02562 * 10 9 8 12 12 C 1.41540 * 120.99649 * 179.72745 * 11 10 9 13 13 H 1.08003 * 120.00090 * 145.91949 * 12 11 10 14 14 C 1.40032 * 120.00150 * 325.92570 * 12 11 10 15 15 N 1.30741 * 119.99761 * 4.18306 * 14 12 11 16 16 Si 1.86801 * 120.00206 * 184.18065 * 14 12 11 17 17 H 1.48499 * 109.46668 * 90.00043 * 16 14 12 18 18 H 1.48498 * 109.47238 * 209.99803 * 16 14 12 19 19 H 1.48496 * 109.46969 * 330.00194 * 16 14 12 20 20 C 1.41163 * 118.00641 * 359.97438 * 11 10 9 21 21 C 1.36591 * 119.12778 * 0.02562 * 20 11 10 22 22 N 1.32067 * 121.26063 * 359.97438 * 21 20 11 23 23 C 1.47284 * 117.89532 * 308.61754 * 5 4 2 24 24 C 1.52647 * 108.38289 * 49.83938 * 23 5 4 25 25 C 1.53981 * 110.13327 * 71.75358 * 24 23 5 26 26 C 1.54606 * 103.87556 * 118.23618 * 25 24 23 27 27 O 1.44471 * 104.82175 * 23.88937 * 26 25 24 28 28 C 1.44558 * 105.36952 * 319.84975 * 27 26 25 29 29 O 1.42203 * 110.84321 * 309.27746 * 24 23 5 30 30 H 1.09004 * 109.47508 * 180.10441 * 1 2 3 31 31 H 1.09009 * 109.47141 * 300.10377 * 1 2 3 32 32 H 1.09000 * 109.46896 * 60.09915 * 1 2 3 33 33 H 1.09001 * 109.79719 * 53.23888 * 4 2 1 34 34 H 1.08997 * 109.69972 * 292.51190 * 4 2 1 35 35 H 0.97000 * 119.99812 * 5.60193 * 8 6 5 36 36 H 1.07994 * 120.66719 * 0.02562 * 10 9 8 37 37 H 0.97002 * 120.00310 * 180.02562 * 15 14 12 38 38 H 1.08000 * 120.43687 * 179.97438 * 20 11 10 39 39 H 1.07998 * 119.37340 * 179.97438 * 21 20 11 40 40 H 1.08998 * 109.68332 * 169.56636 * 23 5 4 41 41 H 1.09002 * 109.68067 * 290.07614 * 23 5 4 42 42 H 1.09001 * 110.54648 * 236.82905 * 25 24 23 43 43 H 1.08995 * 110.55140 * 359.48785 * 25 24 23 44 44 H 1.08994 * 110.37587 * 142.72810 * 26 25 24 45 45 H 1.09004 * 110.36408 * 265.05802 * 26 25 24 46 46 H 1.09006 * 110.38984 * 281.16996 * 28 27 26 47 47 H 1.09005 * 110.38776 * 158.78499 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0416 -0.7315 1.2518 5 7 3.5028 -0.8673 1.1422 6 6 4.3141 -0.4840 2.1480 7 8 5.5097 -0.6928 2.0779 8 7 3.7998 0.1309 3.2315 9 6 4.6491 0.6319 4.2177 10 6 4.1120 1.1623 5.3806 11 6 4.9885 1.6629 6.3626 12 6 4.4933 2.2204 7.5657 13 1 5.0465 2.0984 8.4853 14 6 3.2860 2.9299 7.5638 15 7 2.5755 3.0080 6.4691 16 14 2.6908 3.7648 9.1253 17 1 3.2189 5.1518 9.1770 18 1 1.2063 3.7998 9.1329 19 1 3.1743 3.0066 10.3070 20 6 6.3755 1.5969 6.1088 21 6 6.8112 1.0562 4.9326 22 7 5.9606 0.5959 4.0333 23 6 4.0504 -1.4412 -0.0988 24 6 3.4247 -0.7105 -1.2840 25 6 3.9897 0.7184 -1.3840 26 6 4.6912 0.7442 -2.7615 27 8 4.0383 -0.2917 -3.5282 28 6 3.8399 -1.3852 -2.6037 29 8 2.0079 -0.6764 -1.1667 30 1 -0.3634 -1.0277 0.0019 31 1 -0.3634 0.5155 0.8891 32 1 -0.3633 0.5123 -0.8909 33 1 1.5856 -1.7195 1.3142 34 1 1.7933 -0.1537 2.1421 35 1 2.8389 0.2251 3.3253 36 1 3.0429 1.1909 5.5305 37 1 1.7394 3.4998 6.4676 38 1 7.0829 1.9698 6.8348 39 1 7.8715 1.0042 4.7341 40 1 5.1324 -1.3113 -0.1171 41 1 3.8072 -2.5024 -0.1511 42 1 3.1838 1.4516 -1.3515 43 1 4.7062 0.9034 -0.5838 44 1 4.5533 1.7139 -3.2395 45 1 5.7527 0.5223 -2.6508 46 1 4.7670 -1.9426 -2.4701 47 1 3.0475 -2.0439 -2.9592 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871730442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:40 Heat of formation + Delta-G solvation = -77.432558 kcal Electronic energy + Delta-G solvation = -31474.109758 eV Core-core repulsion = 27236.072156 eV Total energy + Delta-G solvation = -4238.037602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.22824 -41.07111 -39.81622 -38.77575 -36.19900 -35.91224 -35.49665 -34.23817 -32.42746 -31.81820 -30.76529 -29.97128 -27.91520 -27.70876 -26.68016 -24.12409 -23.83425 -23.34340 -23.02654 -21.49550 -20.39645 -19.69834 -19.29517 -18.35646 -17.76762 -17.42157 -17.24315 -16.75564 -16.56818 -16.50626 -16.05198 -15.93440 -15.84239 -15.53573 -15.19485 -15.02773 -14.78138 -14.65704 -14.32304 -14.07847 -13.73922 -13.56555 -13.25969 -13.19602 -13.10996 -12.86434 -12.69791 -12.67947 -12.52041 -12.40876 -12.15224 -12.06543 -11.87242 -11.76294 -11.53732 -11.26195 -11.20250 -11.11337 -10.83762 -9.86224 -9.68544 -9.63877 -8.87053 -8.52640 -6.59193 0.78774 1.00625 1.34715 1.42225 1.54841 1.55314 2.14984 2.22553 2.38259 2.66703 2.85782 2.87566 3.34982 3.52654 3.66215 3.70591 3.72617 3.87810 3.93855 4.06495 4.12306 4.19087 4.29262 4.38682 4.46529 4.51692 4.62546 4.64524 4.68147 4.72525 4.75690 4.80789 4.86676 4.89595 4.90668 4.99771 5.08590 5.23690 5.27685 5.31274 5.46514 5.61954 5.64214 5.69211 5.98538 6.09889 6.21673 6.54356 6.70860 6.80095 6.86865 7.46494 7.82084 8.34414 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015664 B = 0.002826 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.159727 B = 9905.179141 C =10942.430017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.056 0.944 4 C 0.077 3.923 5 N -0.629 5.629 6 C 0.697 3.303 7 O -0.573 6.573 8 N -0.660 5.660 9 C 0.348 3.652 10 C -0.247 4.247 11 C 0.114 3.886 12 C -0.488 4.488 13 H 0.082 0.918 14 C 0.035 3.965 15 N -0.827 5.827 16 Si 0.991 3.009 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.286 4.286 21 C 0.110 3.890 22 N -0.572 5.572 23 C 0.115 3.885 24 C 0.079 3.921 25 C -0.177 4.177 26 C 0.049 3.951 27 O -0.385 6.385 28 C 0.064 3.936 29 O -0.362 6.362 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.416 0.584 36 H 0.131 0.869 37 H 0.289 0.711 38 H 0.118 0.882 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 -5.077 -13.684 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 H 0.074 0.926 4 C -0.045 4.045 5 N -0.368 5.368 6 C 0.399 3.601 7 O -0.447 6.447 8 N -0.311 5.311 9 C 0.120 3.880 10 C -0.273 4.273 11 C 0.106 3.894 12 C -0.519 4.519 13 H 0.100 0.900 14 C -0.180 4.180 15 N -0.453 5.453 16 Si 0.812 3.188 17 H -0.192 1.192 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.310 4.310 21 C -0.043 4.043 22 N -0.292 5.292 23 C -0.009 4.009 24 C 0.038 3.962 25 C -0.215 4.215 26 C -0.027 4.027 27 O -0.304 6.304 28 C -0.013 4.013 29 O -0.281 6.281 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.256 0.744 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.123 0.877 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.537 -5.601 -15.045 17.333 hybrid contribution -0.597 1.128 2.040 2.406 sum -7.134 -4.473 -13.004 15.492 Atomic orbital electron populations 1.21743 0.89809 1.04137 1.03847 1.22698 0.97025 0.94908 0.83948 0.92603 1.22734 0.78974 1.03097 0.99736 1.47378 1.06631 1.66853 1.15952 1.16048 0.85024 0.78732 0.80310 1.90962 1.14487 1.59727 1.79545 1.42610 1.09709 1.58998 1.19790 1.18215 0.88360 0.93980 0.87404 1.21714 1.01378 1.09013 0.95206 1.18033 0.91167 0.86951 0.93289 1.19798 1.05875 1.30991 0.95259 0.89999 1.26764 0.94865 0.95465 1.00865 1.69750 1.12636 1.33641 1.29310 0.85058 0.77931 0.78575 0.77253 1.19153 1.18965 1.18288 1.21980 0.96460 1.12098 1.00463 1.21935 0.98434 0.94114 0.89827 1.67286 1.01929 1.25844 1.34139 1.22068 0.99782 0.97942 0.81069 1.22777 0.82348 0.94930 0.96116 1.23452 1.01291 0.97668 0.99086 1.23473 0.96550 0.92956 0.89718 1.89158 1.80162 1.26915 1.34144 1.23409 1.02569 0.89929 0.85404 1.87879 1.19232 1.77515 1.43524 0.90566 0.89180 0.91187 0.88387 0.88927 0.74414 0.85138 0.90049 0.86379 0.83336 0.89248 0.88944 0.90182 0.91621 0.87682 0.90994 0.88569 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.57 71.98 0.69 -1.22 16 2 C 0.07 1.40 3.13 30.85 0.10 1.50 16 3 H 0.06 1.23 6.50 -2.39 -0.02 1.21 16 4 C 0.08 1.61 5.94 86.50 0.51 2.13 16 5 N -0.63 -17.69 2.90 -835.35 -2.42 -20.11 16 6 C 0.70 26.99 8.27 179.05 1.48 28.47 16 7 O -0.57 -27.02 14.15 -3.95 -0.06 -27.07 16 8 N -0.66 -26.22 5.31 -322.36 -1.71 -27.93 16 9 C 0.35 17.03 7.41 132.76 0.98 18.01 16 10 C -0.25 -12.61 8.61 23.00 0.20 -12.41 16 11 C 0.11 6.02 5.58 -21.11 -0.12 5.91 16 12 C -0.49 -24.99 9.11 23.52 0.21 -24.77 16 13 H 0.08 4.03 7.85 -2.91 -0.02 4.00 16 14 C 0.04 1.66 5.44 85.29 0.46 2.13 16 15 N -0.83 -39.84 10.65 21.84 0.23 -39.61 16 16 Si 0.99 35.90 29.56 68.60 2.03 37.93 16 17 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 18 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 19 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 20 C -0.29 -14.04 9.85 22.60 0.22 -13.82 16 21 C 0.11 5.28 11.10 84.27 0.94 6.22 16 22 N -0.57 -29.47 7.90 -194.27 -1.53 -31.01 16 23 C 0.11 2.76 4.94 86.11 0.43 3.19 16 24 C 0.08 1.70 1.05 -10.27 -0.01 1.69 16 25 C -0.18 -4.08 5.77 31.47 0.18 -3.90 16 26 C 0.05 0.99 7.65 72.53 0.55 1.54 16 27 O -0.38 -8.54 11.65 -148.98 -1.74 -10.27 16 28 C 0.06 1.16 6.93 72.29 0.50 1.66 16 29 O -0.36 -7.79 9.83 -148.98 -1.47 -9.25 16 30 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.85 5.66 -2.39 -0.01 1.84 16 35 H 0.42 13.67 6.21 -92.71 -0.58 13.10 16 36 H 0.13 6.63 6.22 -2.91 -0.02 6.62 16 37 H 0.29 12.49 8.29 -92.71 -0.77 11.72 16 38 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 39 H 0.15 6.13 8.06 -2.91 -0.02 6.10 16 40 H 0.09 2.48 7.06 -2.39 -0.02 2.47 16 41 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.08 1.87 6.63 -2.39 -0.02 1.86 16 43 H 0.07 1.83 7.67 -2.39 -0.02 1.82 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.10 1.41 7.84 -2.38 -0.02 1.40 16 47 H 0.12 1.84 8.08 -2.38 -0.02 1.83 16 Total: -1.00 -69.07 374.73 1.10 -67.97 By element: Atomic # 1 Polarization: 42.63 SS G_CDS: 0.43 Total: 43.06 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 7.33 Total: 16.30 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -5.43 Total: -118.66 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -3.26 Total: -46.60 kcal Atomic # 14 Polarization: 35.90 SS G_CDS: 2.03 Total: 37.93 kcal Total: -69.07 1.10 -67.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871730442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.463 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds