Wall clock time and date at job start Wed Apr 1 2020 05:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.66609 * 2 1 4 4 C 1.50443 * 109.56797 * 239.70586 * 2 1 3 5 5 O 1.21277 * 118.48700 * 72.87990 * 4 2 1 6 6 N 1.33377 * 123.02285 * 253.17000 * 4 2 1 7 7 C 1.45686 * 124.56347 * 355.09747 * 6 4 2 8 8 H 1.09001 * 109.04465 * 142.58990 * 7 6 4 9 9 C 1.52997 * 109.42903 * 261.99306 * 7 6 4 10 10 C 1.52998 * 110.69862 * 22.41449 * 7 6 4 11 11 H 1.08994 * 109.75747 * 193.36562 * 10 7 6 12 12 C 1.52992 * 109.71888 * 72.73070 * 10 7 6 13 13 N 1.47048 * 109.57019 * 120.29793 * 2 1 3 14 14 C 1.34770 * 121.35604 * 257.06340 * 13 2 1 15 15 O 1.21586 * 120.00106 * 180.02562 * 14 13 2 16 16 N 1.34775 * 119.99826 * 359.97438 * 14 13 2 17 17 C 1.39944 * 120.00176 * 184.94286 * 16 14 13 18 18 C 1.38957 * 120.03631 * 324.34661 * 17 16 14 19 19 C 1.38156 * 120.06925 * 179.78722 * 18 17 16 20 20 C 1.38160 * 120.13824 * 0.46804 * 19 18 17 21 21 C 1.38913 * 120.06941 * 359.78804 * 20 19 18 22 22 O 1.35752 * 120.03193 * 179.97438 * 21 20 19 23 23 C 1.34831 * 116.99716 * 185.52220 * 22 21 20 24 24 H 1.07993 * 120.00147 * 4.84466 * 23 22 21 25 25 C 1.38655 * 119.99626 * 184.84301 * 23 22 21 26 26 N 1.31548 * 120.00422 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99542 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47051 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47076 * 119.99941 * 27 25 23 30 30 H 1.48506 * 109.46533 * 239.99550 * 27 25 23 31 31 C 1.38707 * 120.03629 * 144.62088 * 17 16 14 32 32 H 1.09001 * 109.47367 * 170.54661 * 1 2 3 33 33 H 1.09004 * 109.47064 * 290.54738 * 1 2 3 34 34 H 1.08997 * 109.47108 * 50.54643 * 1 2 3 35 35 H 0.96996 * 117.70594 * 175.40013 * 6 4 2 36 36 H 1.09007 * 109.46944 * 181.32155 * 9 7 6 37 37 H 1.09001 * 109.47296 * 301.32049 * 9 7 6 38 38 H 1.08997 * 109.47421 * 61.32450 * 9 7 6 39 39 H 1.09003 * 109.47563 * 316.30756 * 12 10 7 40 40 H 1.09000 * 109.47518 * 76.30544 * 12 10 7 41 41 H 1.08997 * 109.47529 * 196.31197 * 12 10 7 42 42 H 0.97001 * 120.00333 * 4.94163 * 16 14 13 43 43 H 1.08004 * 119.96606 * 0.02562 * 18 17 16 44 44 H 1.08000 * 119.92872 * 180.23019 * 19 18 17 45 45 H 1.08008 * 119.96581 * 179.76578 * 20 19 18 46 46 H 0.97000 * 120.00617 * 180.02562 * 26 25 23 47 47 H 1.07999 * 120.06874 * 0.02562 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0338 -0.7151 -1.2240 5 8 1.9319 -0.1634 -2.2992 6 7 2.5824 -1.9301 -1.1817 7 6 2.8568 -2.6709 0.0423 8 1 2.6568 -3.7285 -0.1297 9 6 4.3270 -2.4925 0.4264 10 6 1.9730 -2.1709 1.1867 11 1 2.3450 -2.5575 2.1355 12 6 0.5325 -2.6376 0.9684 13 7 2.0225 -0.6990 1.1963 14 6 2.5002 -0.0204 2.2582 15 8 2.9017 -0.6235 3.2346 16 7 2.5337 1.3268 2.2373 17 6 3.1239 2.0285 3.2946 18 6 3.0093 1.5526 4.5951 19 6 3.5954 2.2424 5.6388 20 6 4.2886 3.4123 5.3945 21 6 4.4022 3.8961 4.0974 22 8 5.0831 5.0459 3.8583 23 6 5.0589 5.5206 2.5965 24 1 4.4513 5.0339 1.8481 25 6 5.8141 6.6337 2.2600 26 7 6.5538 7.2269 3.1717 27 14 5.7799 7.2917 0.5119 28 1 4.8761 6.4526 -0.3152 29 1 5.2866 8.6923 0.5198 30 1 7.1506 7.2529 -0.0583 31 6 3.8189 3.2029 3.0462 32 1 -0.3634 -1.0137 -0.1688 33 1 -0.3633 0.3607 0.9623 34 1 -0.3633 0.6530 -0.7935 35 1 2.8188 -2.3477 -2.0247 36 1 4.5387 -3.0655 1.3292 37 1 4.9606 -2.8476 -0.3863 38 1 4.5290 -1.4373 0.6102 39 1 0.2586 -2.4944 -0.0769 40 1 0.4500 -3.6940 1.2240 41 1 -0.1376 -2.0569 1.6022 42 1 2.1489 1.8101 1.4895 43 1 2.4649 0.6403 4.7897 44 1 3.5081 1.8685 6.6482 45 1 4.7425 3.9514 6.2131 46 1 7.0819 8.0058 2.9364 47 1 3.9052 3.5775 2.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878281193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:16 Heat of formation + Delta-G solvation = -38.807101 kcal Electronic energy + Delta-G solvation = -31475.215905 eV Core-core repulsion = 27238.853228 eV Total energy + Delta-G solvation = -4236.362677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66859 -39.95355 -38.77260 -37.61141 -36.35819 -35.49950 -34.21867 -32.31011 -32.19115 -30.87747 -29.99819 -29.22048 -28.35853 -25.37840 -25.10733 -24.26924 -22.92602 -21.96316 -21.79188 -20.45978 -19.13985 -18.68286 -18.03659 -17.59679 -17.30432 -16.81653 -15.93275 -15.59520 -15.47072 -14.97961 -14.93779 -14.44751 -14.40248 -14.17380 -14.13001 -13.90464 -13.58987 -13.58320 -13.42711 -13.07771 -12.96565 -12.65784 -12.46183 -12.35876 -12.19287 -12.00493 -11.77124 -11.58088 -11.40594 -11.22532 -11.04797 -10.96767 -10.80307 -10.56001 -10.43521 -9.99101 -9.63592 -9.55883 -9.45651 -9.02881 -8.80596 -7.74321 -7.15247 -6.44708 -4.04323 1.99963 2.18070 2.22982 2.41734 2.82217 3.10391 3.13981 3.16658 3.19069 3.62755 3.95561 3.96614 4.07750 4.40125 4.52243 4.59744 4.62846 4.69054 4.86954 4.98571 5.10342 5.15690 5.21629 5.28112 5.30914 5.41136 5.45354 5.48550 5.64300 5.68211 5.76354 5.90855 5.97315 6.01970 6.06370 6.23165 6.26993 6.38351 6.48211 6.72375 6.87551 6.99213 7.08140 7.17660 7.33160 7.43050 7.74918 7.81977 7.84619 7.99617 8.47433 9.01002 9.71174 10.73392 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003240 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.772437 B = 8641.110948 C =10112.302301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.125 3.875 3 H 0.116 0.884 4 C 0.522 3.478 5 O -0.543 6.543 6 N -0.709 5.709 7 C 0.127 3.873 8 H 0.099 0.901 9 C -0.166 4.166 10 C 0.145 3.855 11 H 0.123 0.877 12 C -0.168 4.168 13 N -0.625 5.625 14 C 0.714 3.286 15 O -0.561 6.561 16 N -0.680 5.680 17 C 0.193 3.807 18 C -0.203 4.203 19 C -0.064 4.064 20 C -0.200 4.200 21 C 0.168 3.832 22 O -0.176 6.176 23 C -0.392 4.392 24 H 0.090 0.910 25 C 0.040 3.960 26 N -0.862 5.862 27 Si 0.939 3.061 28 H -0.267 1.267 29 H -0.275 1.275 30 H -0.276 1.276 31 C -0.256 4.256 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.401 0.599 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.269 0.731 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 -20.862 -6.643 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.134 0.866 4 C 0.307 3.693 5 O -0.419 6.419 6 N -0.361 5.361 7 C 0.021 3.979 8 H 0.117 0.883 9 C -0.224 4.224 10 C 0.041 3.959 11 H 0.141 0.859 12 C -0.226 4.226 13 N -0.365 5.365 14 C 0.417 3.583 15 O -0.437 6.437 16 N -0.328 5.328 17 C 0.099 3.901 18 C -0.223 4.223 19 C -0.083 4.083 20 C -0.220 4.220 21 C 0.114 3.886 22 O -0.080 6.080 23 C -0.468 4.468 24 H 0.108 0.892 25 C -0.164 4.164 26 N -0.497 5.497 27 Si 0.763 3.237 28 H -0.192 1.192 29 H -0.201 1.201 30 H -0.202 1.202 31 C -0.278 4.278 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.236 0.764 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.237 0.763 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.079 0.921 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.384 -20.562 -6.129 24.289 hybrid contribution 0.043 0.425 -1.746 1.797 sum -11.340 -20.137 -7.875 24.416 Atomic orbital electron populations 1.22475 0.91801 1.04476 1.03976 1.21361 0.96823 0.97525 0.82531 0.86633 1.20109 0.77098 0.81457 0.90648 1.90811 1.56595 1.64634 1.29875 1.45453 1.62638 1.17854 1.10133 1.21437 0.95932 0.96171 0.84341 0.88335 1.22236 0.94551 1.03552 1.02095 1.21468 0.95716 0.78704 1.00043 0.85873 1.22466 0.95611 1.02093 1.02462 1.47584 1.67232 1.06228 1.15481 1.15670 0.78371 0.81690 0.82577 1.90933 1.52927 1.67667 1.32174 1.42712 1.61328 1.04547 1.24202 1.17195 0.94796 0.91919 0.86147 1.20679 1.08079 1.02984 0.90605 1.20544 0.96101 0.93748 0.97937 1.20261 1.07643 0.99373 0.94692 1.19052 0.90463 0.86476 0.92588 1.84019 1.61329 1.31444 1.31179 1.21312 1.28547 1.12038 0.84900 0.89228 1.25261 0.95402 0.95994 0.99758 1.70038 1.26334 1.20011 1.33304 0.85686 0.78509 0.78997 0.80466 1.19152 1.20096 1.20155 1.20803 1.07588 0.99089 1.00323 0.90400 0.90507 0.90292 0.76403 0.90725 0.92032 0.91956 0.91747 0.90905 0.90984 0.76266 0.85727 0.86637 0.86414 0.92070 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 8.43 37.16 0.31 -0.99 16 2 C 0.13 1.22 2.86 -68.91 -0.20 1.03 16 3 H 0.12 1.18 6.01 -51.93 -0.31 0.87 16 4 C 0.52 5.63 6.59 -11.73 -0.08 5.55 16 5 O -0.54 -7.78 17.80 5.56 0.10 -7.69 16 6 N -0.71 -5.66 4.75 -54.76 -0.26 -5.92 16 7 C 0.13 0.85 3.20 -68.37 -0.22 0.63 16 8 H 0.10 0.38 8.08 -51.93 -0.42 -0.04 16 9 C -0.17 -1.37 9.39 37.16 0.35 -1.02 16 10 C 0.14 1.16 2.63 -67.51 -0.18 0.98 16 11 H 0.12 1.11 6.99 -51.93 -0.36 0.75 16 12 C -0.17 -0.98 7.59 37.15 0.28 -0.70 16 13 N -0.63 -6.54 2.24 -164.71 -0.37 -6.91 16 14 C 0.71 10.28 8.18 -86.93 -0.71 9.57 16 15 O -0.56 -9.67 13.28 5.29 0.07 -9.60 16 16 N -0.68 -10.30 5.22 -14.24 -0.07 -10.38 16 17 C 0.19 3.65 6.29 -83.71 -0.53 3.13 16 18 C -0.20 -3.82 8.69 -39.35 -0.34 -4.16 16 19 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 20 C -0.20 -4.26 9.99 -39.36 -0.39 -4.65 16 21 C 0.17 4.06 6.64 -39.13 -0.26 3.80 16 22 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 23 C -0.39 -10.88 9.45 30.89 0.29 -10.58 16 24 H 0.09 2.30 5.28 -52.49 -0.28 2.02 16 25 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 26 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 27 Si 0.94 20.57 29.55 -169.99 -5.02 15.54 16 28 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 29 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 30 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 31 C -0.26 -5.53 9.05 -39.21 -0.35 -5.89 16 32 H 0.08 0.52 4.62 -51.93 -0.24 0.28 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 2.71 8.80 -40.82 -0.36 2.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 39 H 0.06 0.37 5.48 -51.93 -0.28 0.09 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.48 7.53 -51.93 -0.39 0.08 16 42 H 0.40 5.11 6.51 -40.82 -0.27 4.85 16 43 H 0.12 2.30 6.25 -52.48 -0.33 1.97 16 44 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 2.75 5.70 -52.49 -0.30 2.46 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -34.64 376.46 -7.69 -42.33 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.05 Total: 10.34 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -2.52 Total: -3.90 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.05 Total: -47.70 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.17 Total: -22.30 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.64 -7.69 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878281193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.523 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds