Wall clock time and date at job start Wed Apr 1 2020 05:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.66609 * 2 1 4 4 C 1.50443 * 109.56797 * 239.70586 * 2 1 3 5 5 O 1.21277 * 118.48700 * 72.87990 * 4 2 1 6 6 N 1.33377 * 123.02285 * 253.17000 * 4 2 1 7 7 C 1.45686 * 124.56347 * 355.09747 * 6 4 2 8 8 H 1.09001 * 109.04465 * 142.58990 * 7 6 4 9 9 C 1.52997 * 109.42903 * 261.99306 * 7 6 4 10 10 C 1.52998 * 110.69862 * 22.41449 * 7 6 4 11 11 H 1.08994 * 109.75747 * 193.36562 * 10 7 6 12 12 C 1.52992 * 109.71888 * 72.73070 * 10 7 6 13 13 N 1.47048 * 109.57019 * 120.29793 * 2 1 3 14 14 C 1.34770 * 121.35604 * 257.06340 * 13 2 1 15 15 O 1.21586 * 120.00106 * 180.02562 * 14 13 2 16 16 N 1.34775 * 119.99826 * 359.97438 * 14 13 2 17 17 C 1.39944 * 120.00176 * 184.94286 * 16 14 13 18 18 C 1.38957 * 120.03631 * 324.34661 * 17 16 14 19 19 C 1.38156 * 120.06925 * 179.78722 * 18 17 16 20 20 C 1.38160 * 120.13824 * 0.46804 * 19 18 17 21 21 C 1.38913 * 120.06941 * 359.78804 * 20 19 18 22 22 O 1.35752 * 120.03193 * 179.97438 * 21 20 19 23 23 C 1.34831 * 116.99716 * 185.52220 * 22 21 20 24 24 H 1.07993 * 120.00147 * 4.84466 * 23 22 21 25 25 C 1.38655 * 119.99626 * 184.84301 * 23 22 21 26 26 N 1.31548 * 120.00422 * 359.97438 * 25 23 22 27 27 Si 1.86807 * 119.99542 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47051 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47076 * 119.99941 * 27 25 23 30 30 H 1.48506 * 109.46533 * 239.99550 * 27 25 23 31 31 C 1.38707 * 120.03629 * 144.62088 * 17 16 14 32 32 H 1.09001 * 109.47367 * 170.54661 * 1 2 3 33 33 H 1.09004 * 109.47064 * 290.54738 * 1 2 3 34 34 H 1.08997 * 109.47108 * 50.54643 * 1 2 3 35 35 H 0.96996 * 117.70594 * 175.40013 * 6 4 2 36 36 H 1.09007 * 109.46944 * 181.32155 * 9 7 6 37 37 H 1.09001 * 109.47296 * 301.32049 * 9 7 6 38 38 H 1.08997 * 109.47421 * 61.32450 * 9 7 6 39 39 H 1.09003 * 109.47563 * 316.30756 * 12 10 7 40 40 H 1.09000 * 109.47518 * 76.30544 * 12 10 7 41 41 H 1.08997 * 109.47529 * 196.31197 * 12 10 7 42 42 H 0.97001 * 120.00333 * 4.94163 * 16 14 13 43 43 H 1.08004 * 119.96606 * 0.02562 * 18 17 16 44 44 H 1.08000 * 119.92872 * 180.23019 * 19 18 17 45 45 H 1.08008 * 119.96581 * 179.76578 * 20 19 18 46 46 H 0.97000 * 120.00617 * 180.02562 * 26 25 23 47 47 H 1.07999 * 120.06874 * 0.02562 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0338 -0.7151 -1.2240 5 8 1.9319 -0.1634 -2.2992 6 7 2.5824 -1.9301 -1.1817 7 6 2.8568 -2.6709 0.0423 8 1 2.6568 -3.7285 -0.1297 9 6 4.3270 -2.4925 0.4264 10 6 1.9730 -2.1709 1.1867 11 1 2.3450 -2.5575 2.1355 12 6 0.5325 -2.6376 0.9684 13 7 2.0225 -0.6990 1.1963 14 6 2.5002 -0.0204 2.2582 15 8 2.9017 -0.6235 3.2346 16 7 2.5337 1.3268 2.2373 17 6 3.1239 2.0285 3.2946 18 6 3.0093 1.5526 4.5951 19 6 3.5954 2.2424 5.6388 20 6 4.2886 3.4123 5.3945 21 6 4.4022 3.8961 4.0974 22 8 5.0831 5.0459 3.8583 23 6 5.0589 5.5206 2.5965 24 1 4.4513 5.0339 1.8481 25 6 5.8141 6.6337 2.2600 26 7 6.5538 7.2269 3.1717 27 14 5.7799 7.2917 0.5119 28 1 4.8761 6.4526 -0.3152 29 1 5.2866 8.6923 0.5198 30 1 7.1506 7.2529 -0.0583 31 6 3.8189 3.2029 3.0462 32 1 -0.3634 -1.0137 -0.1688 33 1 -0.3633 0.3607 0.9623 34 1 -0.3633 0.6530 -0.7935 35 1 2.8188 -2.3477 -2.0247 36 1 4.5387 -3.0655 1.3292 37 1 4.9606 -2.8476 -0.3863 38 1 4.5290 -1.4373 0.6102 39 1 0.2586 -2.4944 -0.0769 40 1 0.4500 -3.6940 1.2240 41 1 -0.1376 -2.0569 1.6022 42 1 2.1489 1.8101 1.4895 43 1 2.4649 0.6403 4.7897 44 1 3.5081 1.8685 6.6482 45 1 4.7425 3.9514 6.2131 46 1 7.0819 8.0058 2.9364 47 1 3.9052 3.5775 2.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878281193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:15 Heat of formation + Delta-G solvation = -63.127086 kcal Electronic energy + Delta-G solvation = -31476.270499 eV Core-core repulsion = 27238.853228 eV Total energy + Delta-G solvation = -4237.417270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.58707 -41.22006 -40.32815 -38.72029 -37.84794 -36.41914 -35.52746 -34.23351 -33.03490 -31.79609 -30.84898 -30.63133 -29.88844 -27.31679 -25.99120 -24.94704 -23.93612 -23.49995 -22.96774 -21.79134 -20.30575 -19.81344 -19.31951 -19.07936 -18.36855 -17.82840 -16.99349 -16.91464 -16.74792 -16.50357 -16.20535 -15.92553 -15.64565 -15.51154 -15.19573 -14.91943 -14.86509 -14.57014 -14.46093 -14.21527 -14.07183 -13.67744 -13.59477 -13.38411 -13.20683 -13.01944 -12.88694 -12.81868 -12.70558 -12.64198 -12.47590 -12.11947 -12.06559 -11.67365 -11.63652 -11.39606 -11.30295 -10.94992 -10.74120 -10.30173 -9.92965 -9.34576 -8.85982 -8.47522 -6.15704 0.43750 0.71919 1.21214 1.34211 1.34495 1.42253 1.51792 1.89540 2.12970 2.16173 2.52318 2.83758 3.16672 3.20430 3.44054 3.49759 3.68106 3.87970 3.90424 4.09584 4.13738 4.31890 4.34920 4.35546 4.45691 4.56320 4.59607 4.65507 4.70078 4.71111 4.80219 4.81406 4.91571 5.03876 5.06525 5.10530 5.15134 5.22266 5.32945 5.40708 5.45857 5.67209 5.67720 5.71282 5.75161 6.01425 6.11902 6.20805 6.61510 6.97355 7.00070 7.29162 7.77335 8.75737 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003240 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.772437 B = 8641.110948 C =10112.302301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.122 3.878 3 H 0.107 0.893 4 C 0.521 3.479 5 O -0.583 6.583 6 N -0.697 5.697 7 C 0.131 3.869 8 H 0.143 0.857 9 C -0.164 4.164 10 C 0.136 3.864 11 H 0.116 0.884 12 C -0.161 4.161 13 N -0.613 5.613 14 C 0.714 3.286 15 O -0.590 6.590 16 N -0.678 5.678 17 C 0.201 3.799 18 C -0.192 4.192 19 C -0.051 4.051 20 C -0.212 4.212 21 C 0.135 3.865 22 O -0.226 6.226 23 C -0.412 4.412 24 H 0.100 0.900 25 C -0.020 4.020 26 N -0.918 5.918 27 Si 1.014 2.986 28 H -0.253 1.253 29 H -0.266 1.266 30 H -0.270 1.270 31 C -0.262 4.262 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.409 0.591 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.412 0.588 43 H 0.139 0.861 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.273 0.727 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -24.032 -7.828 28.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.125 0.875 4 C 0.306 3.694 5 O -0.462 6.462 6 N -0.347 5.347 7 C 0.026 3.974 8 H 0.160 0.840 9 C -0.222 4.222 10 C 0.034 3.966 11 H 0.134 0.866 12 C -0.219 4.219 13 N -0.352 5.352 14 C 0.417 3.583 15 O -0.468 6.468 16 N -0.326 5.326 17 C 0.106 3.894 18 C -0.213 4.213 19 C -0.069 4.069 20 C -0.232 4.232 21 C 0.084 3.916 22 O -0.133 6.133 23 C -0.488 4.488 24 H 0.118 0.882 25 C -0.218 4.218 26 N -0.556 5.556 27 Si 0.834 3.166 28 H -0.176 1.176 29 H -0.191 1.191 30 H -0.195 1.195 31 C -0.284 4.284 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.156 0.844 44 H 0.174 0.826 45 H 0.138 0.862 46 H 0.082 0.918 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.387 -23.833 -7.336 28.303 hybrid contribution 0.547 1.085 -1.269 1.757 sum -12.840 -22.748 -8.605 27.502 Atomic orbital electron populations 1.22449 0.89827 1.05507 1.04241 1.21458 0.98315 0.96957 0.81789 0.87489 1.20203 0.77007 0.81994 0.90148 1.90798 1.58539 1.65777 1.31128 1.45415 1.61145 1.16984 1.11177 1.21606 0.94488 0.98095 0.83180 0.83959 1.22226 0.96028 1.01039 1.02953 1.21793 0.97718 0.76782 1.00346 0.86579 1.22421 0.93403 1.03472 1.02603 1.47581 1.65869 1.07327 1.14395 1.15735 0.78268 0.81145 0.83175 1.90904 1.54254 1.68044 1.33589 1.42629 1.61109 1.05148 1.23756 1.17198 0.93672 0.91039 0.87464 1.20994 1.06985 1.02892 0.90455 1.20953 0.93985 0.92071 0.99909 1.20500 1.08398 1.00513 0.93805 1.19574 0.91224 0.86385 0.94434 1.83981 1.63768 1.33807 1.31695 1.21796 1.29068 1.12661 0.85247 0.88245 1.26511 0.94721 0.95976 1.04548 1.70175 1.28245 1.21210 1.35996 0.84591 0.78910 0.78547 0.74567 1.17604 1.19132 1.19541 1.20795 1.08032 1.00024 0.99538 0.88980 0.90142 0.90152 0.75373 0.90147 0.90825 0.95803 0.91322 0.88373 0.91557 0.74967 0.84374 0.82642 0.86231 0.91816 0.85953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.43 71.98 0.61 -1.55 16 2 C 0.12 2.21 2.86 44.06 0.13 2.34 16 3 H 0.11 2.12 6.01 -2.39 -0.01 2.11 16 4 C 0.52 10.43 6.59 87.79 0.58 11.01 16 5 O -0.58 -16.21 17.80 -3.02 -0.05 -16.27 16 6 N -0.70 -9.35 4.75 -446.33 -2.12 -11.47 16 7 C 0.13 1.33 3.20 45.14 0.14 1.47 16 8 H 0.14 0.36 8.08 -2.39 -0.02 0.34 16 9 C -0.16 -2.39 9.39 71.98 0.68 -1.72 16 10 C 0.14 1.80 2.63 44.84 0.12 1.91 16 11 H 0.12 1.79 6.99 -2.39 -0.02 1.78 16 12 C -0.16 -1.27 7.59 71.98 0.55 -0.72 16 13 N -0.61 -11.75 2.24 -793.30 -1.78 -13.53 16 14 C 0.71 19.60 8.18 179.06 1.46 21.07 16 15 O -0.59 -19.41 13.28 -3.99 -0.05 -19.46 16 16 N -0.68 -19.96 5.22 -317.24 -1.66 -21.61 16 17 C 0.20 7.51 6.29 38.13 0.24 7.75 16 18 C -0.19 -6.91 8.69 22.42 0.19 -6.72 16 19 C -0.05 -1.80 10.03 22.23 0.22 -1.57 16 20 C -0.21 -9.15 9.99 22.41 0.22 -8.93 16 21 C 0.14 6.77 6.64 22.56 0.15 6.92 16 22 O -0.23 -13.58 9.76 -22.77 -0.22 -13.81 16 23 C -0.41 -23.91 9.45 67.92 0.64 -23.27 16 24 H 0.10 5.31 5.28 -2.91 -0.02 5.29 16 25 C -0.02 -1.12 5.49 84.84 0.47 -0.66 16 26 N -0.92 -56.34 13.67 21.61 0.30 -56.05 16 27 Si 1.01 43.12 29.55 68.60 2.03 45.15 16 28 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 29 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 30 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 31 C -0.26 -11.58 9.05 22.51 0.20 -11.37 16 32 H 0.09 0.96 4.62 -2.39 -0.01 0.95 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 4.42 8.80 -92.71 -0.82 3.60 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.02 0.53 7.97 -2.39 -0.02 0.51 16 39 H 0.07 0.51 5.48 -2.39 -0.01 0.50 16 40 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.65 7.53 -2.39 -0.02 0.63 16 42 H 0.41 10.26 6.51 -92.71 -0.60 9.65 16 43 H 0.14 4.72 6.25 -2.91 -0.02 4.70 16 44 H 0.16 4.26 8.06 -2.91 -0.02 4.23 16 45 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.12 5.45 5.70 -2.91 -0.02 5.43 16 Total: -1.00 -79.95 376.46 2.67 -77.28 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: -0.37 Total: 33.80 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 6.60 Total: -4.04 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -5.26 Total: -102.66 kcal Atomic # 8 Polarization: -49.20 SS G_CDS: -0.33 Total: -49.53 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -79.95 2.67 -77.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878281193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.157 kcal (2) G-P(sol) polarization free energy of solvation -79.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds