Wall clock time and date at job start Wed Apr 1 2020 05:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.20741 * 2 1 4 4 N 1.45643 * 109.21954 * 240.61664 * 2 1 3 5 5 C 1.33380 * 124.58716 * 261.56845 * 4 2 1 6 6 O 1.21290 * 118.48621 * 175.70422 * 5 4 2 7 7 C 1.50438 * 123.02819 * 355.67816 * 5 4 2 8 8 H 1.09002 * 109.56918 * 252.89261 * 7 5 4 9 9 C 1.53002 * 109.66734 * 132.58953 * 7 5 4 10 10 N 1.47050 * 108.88415 * 12.70765 * 7 5 4 11 11 C 1.34784 * 121.34773 * 136.99138 * 10 7 5 12 12 O 1.21587 * 120.00315 * 357.86559 * 11 10 7 13 13 N 1.34779 * 119.99937 * 177.87609 * 11 10 7 14 14 C 1.39936 * 120.00183 * 184.74048 * 13 11 10 15 15 C 1.38960 * 120.03634 * 327.91959 * 14 13 11 16 16 C 1.38155 * 120.06924 * 179.71852 * 15 14 13 17 17 C 1.38172 * 120.13841 * 0.55419 * 16 15 14 18 18 C 1.38904 * 120.06782 * 359.71927 * 17 16 15 19 19 O 1.35746 * 120.03637 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00509 * 185.98674 * 19 18 17 21 21 H 1.08005 * 119.99933 * 5.42396 * 20 19 18 22 22 C 1.38651 * 120.00144 * 185.42374 * 20 19 18 23 23 N 1.31555 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00028 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47165 * 59.99737 * 24 22 20 26 26 H 1.48491 * 109.47164 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47096 * 300.00122 * 24 22 20 28 28 C 1.38712 * 120.03557 * 148.18509 * 14 13 11 29 29 C 1.47270 * 117.29928 * 317.26443 * 10 7 5 30 30 H 1.09001 * 109.71955 * 181.17893 * 29 10 7 31 31 C 1.53000 * 109.71681 * 301.82986 * 29 10 7 32 32 H 1.09007 * 109.46943 * 179.38154 * 1 2 3 33 33 H 1.08994 * 109.47383 * 299.38331 * 1 2 3 34 34 H 1.08995 * 109.47156 * 59.38519 * 1 2 3 35 35 H 0.97001 * 117.70781 * 81.58857 * 4 2 1 36 36 H 1.09006 * 109.46930 * 279.17530 * 9 7 5 37 37 H 1.09002 * 109.46588 * 39.17345 * 9 7 5 38 38 H 1.08991 * 109.46973 * 159.17222 * 9 7 5 39 39 H 0.97003 * 119.99999 * 4.73349 * 13 11 10 40 40 H 1.08007 * 119.96239 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.93221 * 180.25287 * 16 15 14 42 42 H 1.07998 * 119.96663 * 179.74436 * 17 16 15 43 43 H 0.97004 * 120.00049 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.06619 * 359.97438 * 28 14 13 45 45 H 1.09001 * 109.47241 * 59.99484 * 31 29 10 46 46 H 1.08997 * 109.46946 * 179.97438 * 31 29 10 47 47 H 1.09001 * 109.47341 * 299.99978 * 31 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 7 2.0095 -0.6748 -1.1983 5 6 2.4107 -1.9460 -1.2422 6 8 2.7147 -2.4200 -2.3165 7 6 2.5042 -2.8190 -0.0205 8 1 3.5516 -2.9719 0.2397 9 6 1.8434 -4.1700 -0.3013 10 7 1.8121 -2.1541 1.0936 11 6 1.0033 -2.8397 1.9258 12 8 0.8033 -4.0246 1.7400 13 7 0.4161 -2.2119 2.9638 14 6 -0.3432 -2.9425 3.8847 15 6 -1.0499 -4.0643 3.4689 16 6 -1.7950 -4.7895 4.3787 17 6 -1.8494 -4.3954 5.7019 18 6 -1.1497 -3.2716 6.1226 19 8 -1.2039 -2.8847 7.4226 20 6 -0.6053 -1.7189 7.7399 21 1 -0.1886 -1.0965 6.9618 22 6 -0.5246 -1.3192 9.0651 23 7 -1.0326 -2.0771 10.0128 24 14 0.3054 0.2956 9.5047 25 1 -0.4038 1.4152 8.8348 26 1 0.2597 0.4911 10.9760 27 1 1.7196 0.2644 9.0526 28 6 -0.3956 -2.5443 5.2124 29 6 2.0335 -0.7076 1.2595 30 1 1.4823 -0.3485 2.1285 31 6 3.5271 -0.4320 1.4444 32 1 -0.3633 -1.0277 -0.0111 33 1 -0.3634 0.5042 0.8954 34 1 -0.3633 0.5233 -0.8844 35 1 2.0393 -0.1638 -2.0223 36 1 0.7630 -4.0760 -0.1909 37 1 2.0787 -4.4852 -1.3179 38 1 2.2176 -4.9112 0.4048 39 1 0.5199 -1.2536 3.0726 40 1 -1.0133 -4.3721 2.4343 41 1 -2.3402 -5.6634 4.0539 42 1 -2.4360 -4.9619 6.4098 43 1 -0.9759 -1.7976 10.9400 44 1 0.1497 -1.6705 5.5372 45 1 4.0725 -0.7827 0.5683 46 1 3.6864 0.6394 1.5663 47 1 3.8864 -0.9562 2.3299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878281194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:21 Heat of formation + Delta-G solvation = -30.967846 kcal Electronic energy + Delta-G solvation = -31518.020150 eV Core-core repulsion = 27281.997408 eV Total energy + Delta-G solvation = -4236.022741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.70259 -39.96540 -38.77816 -37.68561 -36.64334 -34.88418 -34.54517 -32.40210 -32.22381 -30.50354 -30.22018 -29.07513 -28.20294 -25.41598 -25.08686 -24.37563 -22.76054 -22.27941 -21.78547 -20.44499 -19.03119 -18.61862 -17.95004 -17.70992 -17.26815 -16.62879 -16.26076 -15.59711 -15.40287 -14.97729 -14.86539 -14.74315 -14.40389 -14.32273 -14.10908 -13.84636 -13.73303 -13.52755 -13.09852 -12.98533 -12.88695 -12.59611 -12.45409 -12.34599 -12.04411 -11.93318 -11.79845 -11.76785 -11.50860 -11.46565 -11.10915 -10.91726 -10.83151 -10.51020 -10.48382 -9.78075 -9.58938 -9.55956 -9.26809 -8.95066 -8.82272 -7.73103 -7.15242 -6.47050 -4.07056 1.99953 2.16360 2.26478 2.40995 2.81907 3.07480 3.08294 3.12833 3.14905 3.56156 3.92750 3.93055 4.05443 4.34460 4.44051 4.59889 4.71607 4.76863 4.88561 4.97235 5.07837 5.14093 5.25241 5.26319 5.27802 5.34436 5.60794 5.66045 5.68005 5.77635 5.91028 5.93102 6.00799 6.04535 6.21172 6.27603 6.36963 6.42224 6.45397 6.73051 6.85765 6.98314 7.07313 7.15308 7.34024 7.41554 7.78441 7.81959 7.83692 7.96936 8.48822 8.98059 9.69367 10.71047 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.003000 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.271729 B = 9330.089112 C =10659.730607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 H 0.100 0.900 4 N -0.711 5.711 5 C 0.517 3.483 6 O -0.543 6.543 7 C 0.154 3.846 8 H 0.102 0.898 9 C -0.134 4.134 10 N -0.627 5.627 11 C 0.713 3.287 12 O -0.553 6.553 13 N -0.678 5.678 14 C 0.194 3.806 15 C -0.207 4.207 16 C -0.064 4.064 17 C -0.202 4.202 18 C 0.169 3.831 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.089 0.911 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.271 1.271 28 C -0.259 4.259 29 C 0.124 3.876 30 H 0.106 0.894 31 C -0.165 4.165 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.398 0.602 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.270 0.730 44 H 0.128 0.872 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 7.453 -18.797 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.021 3.979 3 H 0.118 0.882 4 N -0.363 5.363 5 C 0.303 3.697 6 O -0.419 6.419 7 C 0.047 3.953 8 H 0.120 0.880 9 C -0.191 4.191 10 N -0.367 5.367 11 C 0.415 3.585 12 O -0.429 6.429 13 N -0.326 5.326 14 C 0.101 3.899 15 C -0.228 4.228 16 C -0.082 4.082 17 C -0.222 4.222 18 C 0.115 3.885 19 O -0.080 6.080 20 C -0.469 4.469 21 H 0.106 0.894 22 C -0.165 4.165 23 N -0.497 5.497 24 Si 0.764 3.236 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.281 4.281 29 C 0.019 3.981 30 H 0.123 0.877 31 C -0.223 4.223 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.235 0.765 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.235 0.765 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.080 0.920 44 H 0.146 0.854 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.506 6.089 -18.832 20.834 hybrid contribution 0.614 1.854 0.125 1.957 sum 7.120 7.943 -18.706 21.534 Atomic orbital electron populations 1.22313 0.94228 1.03389 1.03058 1.21385 0.95105 0.96708 0.84654 0.88206 1.45438 1.65902 1.12200 1.12718 1.20435 0.76020 0.82221 0.91022 1.90782 1.49722 1.71862 1.29553 1.21179 0.98437 0.93725 0.81939 0.88027 1.22104 1.02699 0.92708 1.01597 1.47521 1.49667 1.08120 1.31423 1.15699 0.78496 0.84815 0.79449 1.90971 1.65447 1.13467 1.72999 1.42792 1.52658 1.10933 1.26246 1.17212 0.92092 0.93455 0.87156 1.20811 1.02652 0.98641 1.00694 1.20568 0.97311 0.98157 0.92208 1.20263 1.06273 0.99379 0.96247 1.19047 0.92058 0.92174 0.85225 1.84024 1.66843 1.37946 1.19192 1.21196 1.37801 0.94758 0.93117 0.89386 1.25266 0.97211 0.99523 0.94462 1.70024 1.41975 1.37090 1.00624 0.85817 0.79370 0.80335 0.78086 1.19556 1.20272 1.19602 1.20742 1.09514 1.06527 0.91285 1.21656 0.98069 0.80775 0.97598 0.87655 1.22164 0.94019 1.02932 1.03211 0.91839 0.90831 0.91642 0.76511 0.90097 0.91989 0.90049 0.76485 0.85224 0.86689 0.86481 0.91959 0.85439 0.92004 0.90515 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 9.37 37.16 0.35 -0.75 16 2 C 0.13 0.72 3.23 -68.40 -0.22 0.50 16 3 H 0.10 0.30 8.08 -51.93 -0.42 -0.12 16 4 N -0.71 -5.27 4.90 -54.79 -0.27 -5.54 16 5 C 0.52 5.53 6.81 -11.73 -0.08 5.45 16 6 O -0.54 -7.62 16.85 5.55 0.09 -7.53 16 7 C 0.15 1.66 2.89 -68.91 -0.20 1.46 16 8 H 0.10 0.99 7.84 -51.93 -0.41 0.59 16 9 C -0.13 -1.67 7.79 37.16 0.29 -1.38 16 10 N -0.63 -6.47 2.53 -164.70 -0.42 -6.88 16 11 C 0.71 9.90 7.94 -86.91 -0.69 9.21 16 12 O -0.55 -9.31 9.56 5.29 0.05 -9.26 16 13 N -0.68 -9.46 5.27 -14.24 -0.07 -9.54 16 14 C 0.19 3.52 6.35 -83.71 -0.53 2.99 16 15 C -0.21 -3.83 8.72 -39.34 -0.34 -4.18 16 16 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 17 C -0.20 -4.24 9.99 -39.36 -0.39 -4.63 16 18 C 0.17 3.98 6.64 -39.13 -0.26 3.72 16 19 O -0.18 -4.91 9.76 0.06 0.00 -4.91 16 20 C -0.39 -10.57 9.44 30.88 0.29 -10.28 16 21 H 0.09 2.15 5.30 -52.48 -0.28 1.87 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 24 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 28 C -0.26 -5.34 9.04 -39.21 -0.35 -5.70 16 29 C 0.12 0.86 2.62 -67.52 -0.18 0.68 16 30 H 0.11 0.63 5.57 -51.93 -0.29 0.35 16 31 C -0.17 -0.98 9.03 37.16 0.34 -0.65 16 32 H 0.06 0.58 7.99 -51.92 -0.42 0.17 16 33 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 2.48 8.80 -40.82 -0.36 2.12 16 36 H 0.08 1.15 6.34 -51.93 -0.33 0.82 16 37 H 0.06 0.76 7.27 -51.93 -0.38 0.39 16 38 H 0.08 1.08 7.30 -51.93 -0.38 0.70 16 39 H 0.40 4.35 6.33 -40.82 -0.26 4.09 16 40 H 0.13 2.38 5.98 -52.48 -0.31 2.06 16 41 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.13 2.56 5.72 -52.49 -0.30 2.26 16 45 H 0.06 0.40 6.82 -51.93 -0.35 0.05 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -33.76 375.10 -7.86 -41.62 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.15 Total: 9.94 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.48 Total: -4.15 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.00 Total: -46.00 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.14 Total: -21.70 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.76 -7.86 -41.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878281194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.653 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds