Wall clock time and date at job start Wed Apr 1 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.20741 * 2 1 4 4 N 1.45643 * 109.21954 * 240.61664 * 2 1 3 5 5 C 1.33380 * 124.58716 * 261.56845 * 4 2 1 6 6 O 1.21290 * 118.48621 * 175.70422 * 5 4 2 7 7 C 1.50438 * 123.02819 * 355.67816 * 5 4 2 8 8 H 1.09002 * 109.56918 * 252.89261 * 7 5 4 9 9 C 1.53002 * 109.66734 * 132.58953 * 7 5 4 10 10 N 1.47050 * 108.88415 * 12.70765 * 7 5 4 11 11 C 1.34784 * 121.34773 * 136.99138 * 10 7 5 12 12 O 1.21587 * 120.00315 * 357.86559 * 11 10 7 13 13 N 1.34779 * 119.99937 * 177.87609 * 11 10 7 14 14 C 1.39936 * 120.00183 * 184.74048 * 13 11 10 15 15 C 1.38960 * 120.03634 * 327.91959 * 14 13 11 16 16 C 1.38155 * 120.06924 * 179.71852 * 15 14 13 17 17 C 1.38172 * 120.13841 * 0.55419 * 16 15 14 18 18 C 1.38904 * 120.06782 * 359.71927 * 17 16 15 19 19 O 1.35746 * 120.03637 * 179.97438 * 18 17 16 20 20 C 1.34832 * 117.00509 * 185.98674 * 19 18 17 21 21 H 1.08005 * 119.99933 * 5.42396 * 20 19 18 22 22 C 1.38651 * 120.00144 * 185.42374 * 20 19 18 23 23 N 1.31555 * 119.99953 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00028 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47165 * 59.99737 * 24 22 20 26 26 H 1.48491 * 109.47164 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47096 * 300.00122 * 24 22 20 28 28 C 1.38712 * 120.03557 * 148.18509 * 14 13 11 29 29 C 1.47270 * 117.29928 * 317.26443 * 10 7 5 30 30 H 1.09001 * 109.71955 * 181.17893 * 29 10 7 31 31 C 1.53000 * 109.71681 * 301.82986 * 29 10 7 32 32 H 1.09007 * 109.46943 * 179.38154 * 1 2 3 33 33 H 1.08994 * 109.47383 * 299.38331 * 1 2 3 34 34 H 1.08995 * 109.47156 * 59.38519 * 1 2 3 35 35 H 0.97001 * 117.70781 * 81.58857 * 4 2 1 36 36 H 1.09006 * 109.46930 * 279.17530 * 9 7 5 37 37 H 1.09002 * 109.46588 * 39.17345 * 9 7 5 38 38 H 1.08991 * 109.46973 * 159.17222 * 9 7 5 39 39 H 0.97003 * 119.99999 * 4.73349 * 13 11 10 40 40 H 1.08007 * 119.96239 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.93221 * 180.25287 * 16 15 14 42 42 H 1.07998 * 119.96663 * 179.74436 * 17 16 15 43 43 H 0.97004 * 120.00049 * 179.97438 * 23 22 20 44 44 H 1.08001 * 120.06619 * 359.97438 * 28 14 13 45 45 H 1.09001 * 109.47241 * 59.99484 * 31 29 10 46 46 H 1.08997 * 109.46946 * 179.97438 * 31 29 10 47 47 H 1.09001 * 109.47341 * 299.99978 * 31 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 7 2.0095 -0.6748 -1.1983 5 6 2.4107 -1.9460 -1.2422 6 8 2.7147 -2.4200 -2.3165 7 6 2.5042 -2.8190 -0.0205 8 1 3.5516 -2.9719 0.2397 9 6 1.8434 -4.1700 -0.3013 10 7 1.8121 -2.1541 1.0936 11 6 1.0033 -2.8397 1.9258 12 8 0.8033 -4.0246 1.7400 13 7 0.4161 -2.2119 2.9638 14 6 -0.3432 -2.9425 3.8847 15 6 -1.0499 -4.0643 3.4689 16 6 -1.7950 -4.7895 4.3787 17 6 -1.8494 -4.3954 5.7019 18 6 -1.1497 -3.2716 6.1226 19 8 -1.2039 -2.8847 7.4226 20 6 -0.6053 -1.7189 7.7399 21 1 -0.1886 -1.0965 6.9618 22 6 -0.5246 -1.3192 9.0651 23 7 -1.0326 -2.0771 10.0128 24 14 0.3054 0.2956 9.5047 25 1 -0.4038 1.4152 8.8348 26 1 0.2597 0.4911 10.9760 27 1 1.7196 0.2644 9.0526 28 6 -0.3956 -2.5443 5.2124 29 6 2.0335 -0.7076 1.2595 30 1 1.4823 -0.3485 2.1285 31 6 3.5271 -0.4320 1.4444 32 1 -0.3633 -1.0277 -0.0111 33 1 -0.3634 0.5042 0.8954 34 1 -0.3633 0.5233 -0.8844 35 1 2.0393 -0.1638 -2.0223 36 1 0.7630 -4.0760 -0.1909 37 1 2.0787 -4.4852 -1.3179 38 1 2.2176 -4.9112 0.4048 39 1 0.5199 -1.2536 3.0726 40 1 -1.0133 -4.3721 2.4343 41 1 -2.3402 -5.6634 4.0539 42 1 -2.4360 -4.9619 6.4098 43 1 -0.9759 -1.7976 10.9400 44 1 0.1497 -1.6705 5.5372 45 1 4.0725 -0.7827 0.5683 46 1 3.6864 0.6394 1.5663 47 1 3.8864 -0.9562 2.3299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878281194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:19 Heat of formation + Delta-G solvation = -54.613743 kcal Electronic energy + Delta-G solvation = -31519.045513 eV Core-core repulsion = 27281.997408 eV Total energy + Delta-G solvation = -4237.048104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.62067 -41.16555 -40.30113 -38.62776 -38.11223 -36.00027 -35.66354 -34.20313 -33.19312 -31.51981 -30.89578 -30.61022 -29.59253 -27.26702 -26.09542 -24.96218 -23.72784 -23.55039 -23.20425 -21.71098 -20.23085 -19.54474 -19.45713 -18.95351 -18.34613 -17.60131 -17.30291 -16.96454 -16.58788 -16.36160 -16.13477 -15.86070 -15.58078 -15.48282 -15.41109 -15.08454 -14.86412 -14.53758 -14.42934 -14.19733 -13.82495 -13.56554 -13.44705 -13.38068 -13.22495 -13.15480 -12.78548 -12.69545 -12.63494 -12.55031 -12.40347 -12.33639 -12.12631 -12.05687 -11.41007 -11.37507 -11.20670 -10.71060 -10.49722 -10.26342 -9.84844 -9.28024 -8.80061 -8.42159 -6.10972 0.48131 0.76029 1.17846 1.39103 1.40567 1.50165 1.55783 1.96428 2.10911 2.21666 2.60130 2.88905 3.21783 3.29060 3.38078 3.54009 3.72734 3.85861 3.95991 4.10624 4.15704 4.27829 4.30396 4.39698 4.48533 4.57494 4.68369 4.72315 4.74046 4.80104 4.84153 4.85436 4.89455 5.06083 5.07047 5.14952 5.22325 5.26999 5.35631 5.39191 5.51613 5.68786 5.71947 5.75863 5.79772 6.05506 6.13387 6.24996 6.72736 7.02165 7.02591 7.35973 7.82893 8.80907 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.003000 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.271729 B = 9330.089112 C =10659.730607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.130 3.870 3 H 0.143 0.857 4 N -0.697 5.697 5 C 0.520 3.480 6 O -0.581 6.581 7 C 0.153 3.847 8 H 0.115 0.885 9 C -0.124 4.124 10 N -0.616 5.616 11 C 0.711 3.289 12 O -0.585 6.585 13 N -0.668 5.668 14 C 0.207 3.793 15 C -0.201 4.201 16 C -0.053 4.053 17 C -0.217 4.217 18 C 0.136 3.864 19 O -0.228 6.228 20 C -0.412 4.412 21 H 0.106 0.894 22 C -0.024 4.024 23 N -0.923 5.923 24 Si 1.018 2.982 25 H -0.253 1.253 26 H -0.278 1.278 27 H -0.255 1.255 28 C -0.258 4.258 29 C 0.114 3.886 30 H 0.120 0.880 31 C -0.161 4.161 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.415 0.585 40 H 0.138 0.862 41 H 0.149 0.851 42 H 0.115 0.885 43 H 0.272 0.728 44 H 0.132 0.868 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 10.346 -20.819 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.025 3.975 3 H 0.161 0.839 4 N -0.347 5.347 5 C 0.306 3.694 6 O -0.461 6.461 7 C 0.046 3.954 8 H 0.132 0.868 9 C -0.181 4.181 10 N -0.355 5.355 11 C 0.414 3.586 12 O -0.463 6.463 13 N -0.317 5.317 14 C 0.111 3.889 15 C -0.222 4.222 16 C -0.072 4.072 17 C -0.237 4.237 18 C 0.085 3.915 19 O -0.134 6.134 20 C -0.488 4.488 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.561 5.561 24 Si 0.837 3.163 25 H -0.177 1.177 26 H -0.203 1.203 27 H -0.179 1.179 28 C -0.280 4.280 29 C 0.011 3.989 30 H 0.137 0.863 31 C -0.219 4.219 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.255 0.745 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.149 0.851 45 H 0.075 0.925 46 H 0.123 0.877 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.871 9.053 -20.928 24.122 hybrid contribution 0.167 0.851 0.468 0.985 sum 8.037 9.903 -20.460 24.109 Atomic orbital electron populations 1.22317 0.94569 1.01661 1.04338 1.21615 0.94675 0.98240 0.82961 0.83927 1.45379 1.64235 1.11140 1.13969 1.20289 0.75975 0.83059 0.90096 1.90772 1.51826 1.72882 1.30606 1.21160 0.98822 0.93090 0.82315 0.86807 1.21915 1.01458 0.93699 1.01071 1.47462 1.48272 1.09593 1.30186 1.15796 0.78718 0.84564 0.79568 1.90956 1.66554 1.15055 1.73783 1.42587 1.52071 1.11571 1.25517 1.17158 0.91537 0.93259 0.86918 1.21090 1.01724 0.98377 1.01027 1.20912 0.96646 0.98770 0.90859 1.20462 1.06590 0.99182 0.97485 1.19544 0.93634 0.93671 0.84673 1.83994 1.68954 1.39033 1.21444 1.21792 1.37696 0.95211 0.94072 0.87644 1.26613 0.97747 1.03769 0.94007 1.70192 1.44858 1.39944 1.01086 0.84657 0.78759 0.75219 0.77668 1.17684 1.20289 1.17936 1.20756 1.09070 1.06356 0.91824 1.22062 0.99434 0.78409 0.98998 0.86285 1.22154 0.92612 1.04663 1.02445 0.94977 0.89445 0.90616 0.75375 0.91929 0.92229 0.91212 0.74537 0.84450 0.83351 0.86663 0.91955 0.85051 0.92477 0.87654 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.37 71.98 0.67 -0.92 16 2 C 0.13 0.92 3.23 45.15 0.15 1.07 16 3 H 0.14 -0.01 8.08 -2.39 -0.02 -0.03 16 4 N -0.70 -8.22 4.90 -446.41 -2.19 -10.40 16 5 C 0.52 10.23 6.81 87.79 0.60 10.83 16 6 O -0.58 -15.81 16.85 -3.06 -0.05 -15.86 16 7 C 0.15 3.09 2.89 44.06 0.13 3.21 16 8 H 0.11 2.05 7.84 -2.39 -0.02 2.03 16 9 C -0.12 -3.08 7.79 71.98 0.56 -2.52 16 10 N -0.62 -11.42 2.53 -793.26 -2.00 -13.42 16 11 C 0.71 18.58 7.94 179.05 1.42 20.01 16 12 O -0.59 -19.22 9.56 -3.99 -0.04 -19.26 16 13 N -0.67 -17.23 5.27 -317.22 -1.67 -18.90 16 14 C 0.21 7.21 6.35 38.13 0.24 7.45 16 15 C -0.20 -7.16 8.72 22.42 0.20 -6.97 16 16 C -0.05 -1.90 10.03 22.23 0.22 -1.68 16 17 C -0.22 -9.28 9.99 22.41 0.22 -9.05 16 18 C 0.14 6.57 6.64 22.56 0.15 6.72 16 19 O -0.23 -13.26 9.76 -22.71 -0.22 -13.48 16 20 C -0.41 -22.75 9.44 67.92 0.64 -22.11 16 21 H 0.11 5.16 5.30 -2.91 -0.02 5.14 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 23 N -0.92 -55.35 13.67 21.61 0.30 -55.06 16 24 Si 1.02 40.22 29.55 68.60 2.03 42.25 16 25 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 27 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 28 C -0.26 -10.58 9.04 22.51 0.20 -10.37 16 29 C 0.11 1.17 2.62 44.84 0.12 1.29 16 30 H 0.12 0.93 5.57 -2.39 -0.01 0.91 16 31 C -0.16 -1.29 9.03 71.98 0.65 -0.64 16 32 H 0.03 0.52 7.99 -2.38 -0.02 0.50 16 33 H 0.09 0.60 8.13 -2.39 -0.02 0.59 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.41 3.75 8.80 -92.71 -0.82 2.94 16 36 H 0.06 1.79 6.34 -2.38 -0.02 1.77 16 37 H 0.06 1.49 7.27 -2.39 -0.02 1.47 16 38 H 0.07 1.87 7.30 -2.39 -0.02 1.86 16 39 H 0.41 7.83 6.33 -92.71 -0.59 7.25 16 40 H 0.14 4.81 5.98 -2.91 -0.02 4.79 16 41 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.13 5.19 5.72 -2.91 -0.02 5.17 16 45 H 0.06 0.54 6.82 -2.39 -0.02 0.53 16 46 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -78.60 375.10 2.43 -76.17 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.36 Total: 32.50 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 6.64 Total: -4.54 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -5.56 Total: -97.78 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.31 Total: -48.61 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -78.60 2.43 -76.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878281194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.560 kcal (2) G-P(sol) polarization free energy of solvation -78.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds