Wall clock time and date at job start Wed Apr 1 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.74816 * 2 1 4 4 C 1.53818 * 109.76016 * 239.37639 * 2 1 3 5 5 N 1.46966 * 108.57255 * 289.94394 * 4 2 1 6 6 C 1.34777 * 120.58900 * 124.62786 * 5 4 2 7 7 O 1.21585 * 119.99888 * 186.00988 * 6 5 4 8 8 C 1.47591 * 120.00382 * 6.00671 * 6 5 4 9 9 C 1.38973 * 119.88507 * 53.77527 * 8 6 5 10 10 C 1.39696 * 119.59064 * 179.97438 * 9 8 6 11 11 N 1.35478 * 133.00948 * 180.02562 * 10 9 8 12 12 N 1.28635 * 110.13505 * 179.97438 * 11 10 9 13 13 N 1.40231 * 109.53238 * 0.02562 * 12 11 10 14 14 H 0.97001 * 126.64852 * 179.97438 * 13 12 11 15 15 C 1.37299 * 106.68972 * 359.97438 * 13 12 11 16 16 C 1.39171 * 133.68400 * 180.02562 * 15 13 12 17 17 C 1.36584 * 120.13285 * 179.75067 * 16 15 13 18 18 F 1.35105 * 119.81089 * 180.23128 * 17 16 15 19 19 C 1.46960 * 118.81691 * 304.64343 * 5 4 2 20 20 C 1.53373 * 108.63113 * 55.22976 * 19 5 4 21 21 H 1.08998 * 109.74945 * 70.40764 * 20 19 5 22 22 C 1.53005 * 109.60765 * 190.83068 * 20 19 5 23 23 N 1.46960 * 109.61211 * 120.42452 * 2 1 3 24 24 C 1.36936 * 120.59504 * 244.54132 * 23 2 1 25 25 H 1.08001 * 119.99849 * 215.47654 * 24 23 2 26 26 C 1.38809 * 120.00131 * 35.47858 * 24 23 2 27 27 N 1.31613 * 119.99751 * 355.92566 * 26 24 23 28 28 Si 1.86802 * 120.00158 * 175.91840 * 26 24 23 29 29 H 1.48501 * 109.46928 * 270.00348 * 28 26 24 30 30 H 1.48505 * 109.46677 * 30.00172 * 28 26 24 31 31 H 1.48496 * 109.46839 * 150.00169 * 28 26 24 32 32 H 1.08998 * 109.47452 * 299.57102 * 1 2 3 33 33 H 1.09001 * 109.47232 * 59.57163 * 1 2 3 34 34 H 1.09004 * 109.47295 * 179.57465 * 1 2 3 35 35 H 1.08999 * 109.73969 * 170.15762 * 4 2 1 36 36 H 1.08993 * 109.67223 * 49.69077 * 4 2 1 37 37 H 1.07998 * 120.20009 * 359.95672 * 9 8 6 38 38 H 1.07997 * 119.93631 * 359.96508 * 16 15 13 39 39 H 1.08997 * 109.61555 * 295.48716 * 19 5 4 40 40 H 1.08997 * 109.75157 * 175.05455 * 19 5 4 41 41 H 1.09005 * 109.46838 * 179.14840 * 22 20 19 42 42 H 1.08993 * 109.47188 * 299.14308 * 22 20 19 43 43 H 1.08999 * 109.47162 * 59.15157 * 22 20 19 44 44 H 0.97001 * 119.99792 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2457 5 7 1.7610 -2.1706 -1.0960 6 6 1.0603 -2.8311 -2.0389 7 8 0.7331 -3.9875 -1.8546 8 6 0.6899 -2.1508 -3.2952 9 6 1.6708 -1.5388 -4.0664 10 6 1.3135 -0.8970 -5.2547 11 7 2.0251 -0.2296 -6.1946 12 7 1.2435 0.1918 -7.1254 13 7 -0.0752 -0.1889 -6.8383 14 1 -0.8619 -0.0003 -7.3736 15 6 -0.0369 -0.8802 -5.6526 16 6 -1.0065 -1.4978 -4.8682 17 6 -0.6518 -2.1282 -3.7097 18 9 -1.5978 -2.7297 -2.9556 19 6 2.2495 -2.8705 0.1004 20 6 1.7343 -2.1342 1.3433 21 1 0.6588 -2.2825 1.4398 22 6 2.4407 -2.6732 2.5890 23 7 2.0232 -0.7010 1.1937 24 6 2.7344 -0.0297 2.1521 25 1 3.5397 -0.5257 2.6736 26 6 2.4204 1.2884 2.4535 27 7 1.4934 1.9183 1.7635 28 14 3.3134 2.1682 3.8384 29 1 2.5772 1.9623 5.1116 30 1 4.6879 1.6209 3.9673 31 1 3.3851 3.6205 3.5373 32 1 -0.3634 0.5071 0.8938 33 1 -0.3634 0.5205 -0.8861 34 1 -0.3634 -1.0277 -0.0076 35 1 3.1257 -0.5889 -1.3391 36 1 1.5492 -0.3542 -2.1347 37 1 2.7028 -1.5590 -3.7488 38 1 -2.0410 -1.4815 -5.1780 39 1 3.3394 -2.8739 0.1029 40 1 1.8804 -3.8961 0.1036 41 1 2.0840 -2.1381 3.4691 42 1 2.2249 -3.7360 2.6978 43 1 3.5164 -2.5293 2.4875 44 1 1.2737 2.8393 1.9743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880457634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:39 Heat of formation + Delta-G solvation = 71.039537 kcal Electronic energy + Delta-G solvation = -31746.074896 eV Core-core repulsion = 27423.307973 eV Total energy + Delta-G solvation = -4322.766923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.18205 -42.42061 -39.99695 -37.67876 -36.96382 -34.27274 -33.89669 -32.81043 -31.22028 -30.71938 -30.38275 -27.96931 -26.44746 -25.79167 -24.58564 -23.93128 -23.26709 -22.65772 -21.01282 -20.26277 -18.98529 -18.79959 -18.05901 -17.39436 -16.56922 -16.28649 -15.98769 -15.74003 -15.49976 -15.13875 -15.10371 -14.56551 -14.36734 -14.00101 -13.83773 -13.68156 -13.44639 -13.12205 -12.73216 -12.51683 -12.39220 -12.17949 -11.90332 -11.74880 -11.62753 -11.42521 -11.30237 -11.17538 -11.00619 -10.83508 -10.69221 -10.57209 -10.22002 -10.11110 -9.88550 -9.74401 -9.52656 -9.05580 -8.83235 -8.48547 -8.25504 -6.58399 -5.85536 -3.39844 0.00685 0.57749 1.75480 1.95195 2.67609 3.05460 3.32034 3.33072 3.40464 3.41049 3.66336 3.89262 4.10381 4.34842 4.40618 4.48008 4.64340 4.97558 5.16530 5.25213 5.32275 5.43653 5.54662 5.62272 5.68929 5.73269 5.87546 6.03712 6.07831 6.14353 6.18276 6.22155 6.35216 6.44092 6.49264 6.61134 6.74195 6.82998 6.90591 6.98919 7.09426 7.56483 7.58173 7.61679 7.74084 7.82875 8.36431 8.44669 9.16676 9.74041 10.33773 11.19164 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003624 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.155185 B = 7723.479799 C = 8713.590872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 H 0.125 0.875 4 C 0.078 3.922 5 N -0.581 5.581 6 C 0.558 3.442 7 O -0.540 6.540 8 C -0.161 4.161 9 C 0.037 3.963 10 C -0.034 4.034 11 N -0.196 5.196 12 N 0.001 4.999 13 N -0.496 5.496 14 H 0.450 0.550 15 C 0.132 3.868 16 C -0.174 4.174 17 C 0.204 3.796 18 F -0.110 7.110 19 C 0.100 3.900 20 C 0.154 3.846 21 H 0.033 0.967 22 C -0.134 4.134 23 N -0.583 5.583 24 C -0.251 4.251 25 H 0.070 0.930 26 C 0.012 3.988 27 N -0.901 5.901 28 Si 0.901 3.099 29 H -0.287 1.287 30 H -0.279 1.279 31 H -0.291 1.291 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 -4.955 -13.994 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.142 0.858 4 C -0.046 4.046 5 N -0.311 5.311 6 C 0.344 3.656 7 O -0.419 6.419 8 C -0.168 4.168 9 C 0.015 3.985 10 C -0.157 4.157 11 N -0.076 5.076 12 N 0.019 4.981 13 N -0.219 5.219 14 H 0.297 0.703 15 C 0.008 3.992 16 C -0.197 4.197 17 C 0.180 3.820 18 F -0.088 7.088 19 C -0.023 4.023 20 C 0.047 3.953 21 H 0.051 0.949 22 C -0.192 4.192 23 N -0.306 5.306 24 C -0.381 4.381 25 H 0.087 0.913 26 C -0.187 4.187 27 N -0.545 5.545 28 Si 0.730 3.270 29 H -0.214 1.214 30 H -0.205 1.205 31 H -0.218 1.218 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.070 -4.670 -14.762 15.785 hybrid contribution -1.114 0.252 1.045 1.549 sum -4.185 -4.419 -13.717 15.006 Atomic orbital electron populations 1.21975 0.98422 0.98371 1.00876 1.21052 0.92102 0.97864 0.82269 0.85823 1.23001 1.00701 0.79161 1.01749 1.47969 1.52222 1.10935 1.19989 1.17775 0.79098 0.86010 0.82742 1.90783 1.54788 1.17005 1.79323 1.19832 0.92531 1.05344 0.99108 1.20469 1.00234 0.89017 0.88820 1.19731 0.89565 1.07374 0.99026 1.74907 1.25310 1.08071 0.99342 1.81616 0.83917 1.15514 1.17010 1.47673 1.10630 1.45013 1.18571 0.70294 1.18880 0.95875 0.95815 0.88616 1.19395 0.99901 1.05051 0.95376 1.16828 0.84748 0.91818 0.88610 1.91621 1.62659 1.80066 1.74481 1.22340 0.98547 0.96522 0.84928 1.20811 0.96633 0.86281 0.91580 0.94943 1.21743 1.00711 0.98304 0.98432 1.44106 1.62867 1.03222 1.20375 1.19132 1.10039 0.95089 1.13800 0.91279 1.25294 0.96949 0.98452 0.98004 1.69814 1.33172 1.11407 1.40106 0.86324 0.79205 0.78733 0.82693 1.21400 1.20476 1.21763 0.90969 0.95578 0.95909 0.91477 0.91202 0.82495 0.83005 0.91561 0.89943 0.91599 0.94030 0.92613 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.92 37.15 0.33 -2.57 16 2 C 0.17 3.71 2.35 -67.26 -0.16 3.55 16 3 H 0.12 3.00 5.83 -51.93 -0.30 2.70 16 4 C 0.08 1.35 5.14 -3.36 -0.02 1.33 16 5 N -0.58 -10.13 2.59 -173.42 -0.45 -10.58 16 6 C 0.56 9.64 6.86 -12.44 -0.09 9.56 16 7 O -0.54 -10.81 16.23 5.29 0.09 -10.73 16 8 C -0.16 -2.30 4.63 -104.98 -0.49 -2.78 16 9 C 0.04 0.47 7.78 -38.76 -0.30 0.17 16 10 C -0.03 -0.42 7.26 -84.75 -0.61 -1.03 16 11 N -0.20 -2.54 12.40 32.15 0.40 -2.14 16 12 N 0.00 0.02 13.82 60.35 0.83 0.85 16 13 N -0.50 -4.21 7.54 32.38 0.24 -3.96 16 14 H 0.45 1.94 8.96 -182.50 -1.64 0.30 16 15 C 0.13 1.37 7.34 -84.11 -0.62 0.75 16 16 C -0.17 -1.72 9.97 -39.83 -0.40 -2.12 16 17 C 0.20 2.67 7.21 -39.35 -0.28 2.39 16 18 F -0.11 -1.64 16.59 2.25 0.04 -1.60 16 19 C 0.10 1.78 5.91 -3.60 -0.02 1.76 16 20 C 0.15 3.06 3.22 -67.48 -0.22 2.84 16 21 H 0.03 0.71 7.39 -51.93 -0.38 0.32 16 22 C -0.13 -2.38 8.01 37.16 0.30 -2.08 16 23 N -0.58 -13.12 2.69 -156.76 -0.42 -13.55 16 24 C -0.25 -6.18 8.41 -15.06 -0.13 -6.31 16 25 H 0.07 1.68 6.41 -52.49 -0.34 1.34 16 26 C 0.01 0.30 5.32 -17.43 -0.09 0.20 16 27 N -0.90 -23.56 9.61 55.49 0.53 -23.02 16 28 Si 0.90 20.37 29.56 -169.99 -5.02 15.34 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 31 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 32 H 0.07 1.73 7.31 -51.93 -0.38 1.36 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.47 7.01 -51.93 -0.36 0.11 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.09 5.29 -51.93 -0.27 0.82 16 37 H 0.16 1.78 7.74 -52.49 -0.41 1.37 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.07 1.13 8.12 -51.93 -0.42 0.70 16 40 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 41 H 0.06 1.26 7.71 -51.93 -0.40 0.86 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.98 7.35 -51.93 -0.38 0.60 16 44 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -29.66 357.57 -7.64 -37.30 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.48 Total: 1.04 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.79 Total: 5.66 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 1.14 Total: -52.40 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.66 -7.64 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.339 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds