Wall clock time and date at job start Wed Apr 1 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.74816 * 2 1 4 4 C 1.53818 * 109.76016 * 239.37639 * 2 1 3 5 5 N 1.46966 * 108.57255 * 289.94394 * 4 2 1 6 6 C 1.34777 * 120.58900 * 124.62786 * 5 4 2 7 7 O 1.21585 * 119.99888 * 186.00988 * 6 5 4 8 8 C 1.47591 * 120.00382 * 6.00671 * 6 5 4 9 9 C 1.38973 * 119.88507 * 53.77527 * 8 6 5 10 10 C 1.39696 * 119.59064 * 179.97438 * 9 8 6 11 11 N 1.35478 * 133.00948 * 180.02562 * 10 9 8 12 12 N 1.28635 * 110.13505 * 179.97438 * 11 10 9 13 13 N 1.40231 * 109.53238 * 0.02562 * 12 11 10 14 14 H 0.97001 * 126.64852 * 179.97438 * 13 12 11 15 15 C 1.37299 * 106.68972 * 359.97438 * 13 12 11 16 16 C 1.39171 * 133.68400 * 180.02562 * 15 13 12 17 17 C 1.36584 * 120.13285 * 179.75067 * 16 15 13 18 18 F 1.35105 * 119.81089 * 180.23128 * 17 16 15 19 19 C 1.46960 * 118.81691 * 304.64343 * 5 4 2 20 20 C 1.53373 * 108.63113 * 55.22976 * 19 5 4 21 21 H 1.08998 * 109.74945 * 70.40764 * 20 19 5 22 22 C 1.53005 * 109.60765 * 190.83068 * 20 19 5 23 23 N 1.46960 * 109.61211 * 120.42452 * 2 1 3 24 24 C 1.36936 * 120.59504 * 244.54132 * 23 2 1 25 25 H 1.08001 * 119.99849 * 215.47654 * 24 23 2 26 26 C 1.38809 * 120.00131 * 35.47858 * 24 23 2 27 27 N 1.31613 * 119.99751 * 355.92566 * 26 24 23 28 28 Si 1.86802 * 120.00158 * 175.91840 * 26 24 23 29 29 H 1.48501 * 109.46928 * 270.00348 * 28 26 24 30 30 H 1.48505 * 109.46677 * 30.00172 * 28 26 24 31 31 H 1.48496 * 109.46839 * 150.00169 * 28 26 24 32 32 H 1.08998 * 109.47452 * 299.57102 * 1 2 3 33 33 H 1.09001 * 109.47232 * 59.57163 * 1 2 3 34 34 H 1.09004 * 109.47295 * 179.57465 * 1 2 3 35 35 H 1.08999 * 109.73969 * 170.15762 * 4 2 1 36 36 H 1.08993 * 109.67223 * 49.69077 * 4 2 1 37 37 H 1.07998 * 120.20009 * 359.95672 * 9 8 6 38 38 H 1.07997 * 119.93631 * 359.96508 * 16 15 13 39 39 H 1.08997 * 109.61555 * 295.48716 * 19 5 4 40 40 H 1.08997 * 109.75157 * 175.05455 * 19 5 4 41 41 H 1.09005 * 109.46838 * 179.14840 * 22 20 19 42 42 H 1.08993 * 109.47188 * 299.14308 * 22 20 19 43 43 H 1.08999 * 109.47162 * 59.15157 * 22 20 19 44 44 H 0.97001 * 119.99792 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0500 -0.7374 -1.2457 5 7 1.7610 -2.1706 -1.0960 6 6 1.0603 -2.8311 -2.0389 7 8 0.7331 -3.9875 -1.8546 8 6 0.6899 -2.1508 -3.2952 9 6 1.6708 -1.5388 -4.0664 10 6 1.3135 -0.8970 -5.2547 11 7 2.0251 -0.2296 -6.1946 12 7 1.2435 0.1918 -7.1254 13 7 -0.0752 -0.1889 -6.8383 14 1 -0.8619 -0.0003 -7.3736 15 6 -0.0369 -0.8802 -5.6526 16 6 -1.0065 -1.4978 -4.8682 17 6 -0.6518 -2.1282 -3.7097 18 9 -1.5978 -2.7297 -2.9556 19 6 2.2495 -2.8705 0.1004 20 6 1.7343 -2.1342 1.3433 21 1 0.6588 -2.2825 1.4398 22 6 2.4407 -2.6732 2.5890 23 7 2.0232 -0.7010 1.1937 24 6 2.7344 -0.0297 2.1521 25 1 3.5397 -0.5257 2.6736 26 6 2.4204 1.2884 2.4535 27 7 1.4934 1.9183 1.7635 28 14 3.3134 2.1682 3.8384 29 1 2.5772 1.9623 5.1116 30 1 4.6879 1.6209 3.9673 31 1 3.3851 3.6205 3.5373 32 1 -0.3634 0.5071 0.8938 33 1 -0.3634 0.5205 -0.8861 34 1 -0.3634 -1.0277 -0.0076 35 1 3.1257 -0.5889 -1.3391 36 1 1.5492 -0.3542 -2.1347 37 1 2.7028 -1.5590 -3.7488 38 1 -2.0410 -1.4815 -5.1780 39 1 3.3394 -2.8739 0.1029 40 1 1.8804 -3.8961 0.1036 41 1 2.0840 -2.1381 3.4691 42 1 2.2249 -3.7360 2.6978 43 1 3.5164 -2.5293 2.4875 44 1 1.2737 2.8393 1.9743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880457634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:38 Heat of formation + Delta-G solvation = 52.512837 kcal Electronic energy + Delta-G solvation = -31746.878274 eV Core-core repulsion = 27423.307973 eV Total energy + Delta-G solvation = -4323.570301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.20447 -43.31076 -41.36419 -39.08208 -38.14556 -35.74176 -34.92016 -34.38699 -32.96576 -31.74617 -31.31740 -29.70684 -27.87012 -27.26472 -25.89659 -25.23361 -24.39994 -23.60405 -22.62429 -21.57271 -20.43632 -19.78455 -19.22985 -18.61707 -17.72245 -17.56499 -17.27442 -17.10996 -16.77469 -16.47169 -16.35190 -15.80072 -15.71591 -15.41259 -15.21698 -15.00675 -14.78669 -14.62618 -14.24742 -13.65389 -13.46708 -13.45005 -13.33972 -13.11184 -12.92215 -12.84654 -12.75801 -12.52449 -12.38147 -12.34089 -12.23571 -12.17354 -11.97092 -11.74641 -11.58011 -11.36733 -11.06078 -10.38545 -10.04255 -9.76716 -9.68777 -8.39361 -7.76044 -5.31764 -0.89078 -0.39175 0.86854 1.19199 1.43419 1.51615 1.54996 1.60392 1.87996 2.21482 2.55867 2.75561 2.92230 3.17453 3.37259 3.39141 3.48021 3.56960 3.75662 4.08464 4.17383 4.21142 4.33478 4.38265 4.52797 4.55049 4.62325 4.63260 4.66969 4.68967 4.75999 4.85423 4.88324 4.96894 5.12012 5.18995 5.21864 5.37291 5.39009 5.57131 5.77897 5.83142 5.89834 5.90314 6.38680 6.56380 6.68562 6.99982 7.28217 7.91981 8.47629 9.25654 Molecular weight = 347.15amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.003624 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.155185 B = 7723.479799 C = 8713.590872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.171 3.829 3 H 0.096 0.904 4 C 0.093 3.907 5 N -0.584 5.584 6 C 0.560 3.440 7 O -0.571 6.571 8 C -0.176 4.176 9 C 0.042 3.958 10 C -0.044 4.044 11 N -0.220 5.220 12 N -0.002 5.002 13 N -0.468 5.468 14 H 0.470 0.530 15 C 0.136 3.864 16 C -0.142 4.142 17 C 0.179 3.821 18 F -0.126 7.126 19 C 0.108 3.892 20 C 0.152 3.848 21 H 0.010 0.990 22 C -0.126 4.126 23 N -0.596 5.596 24 C -0.251 4.251 25 H 0.072 0.928 26 C -0.035 4.035 27 N -0.921 5.921 28 Si 0.955 3.045 29 H -0.294 1.294 30 H -0.271 1.271 31 H -0.298 1.298 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.165 0.835 38 H 0.191 0.809 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -5.188 -15.907 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.113 0.887 4 C -0.030 4.030 5 N -0.314 5.314 6 C 0.348 3.652 7 O -0.452 6.452 8 C -0.183 4.183 9 C 0.019 3.981 10 C -0.168 4.168 11 N -0.100 5.100 12 N 0.016 4.984 13 N -0.194 5.194 14 H 0.322 0.678 15 C 0.011 3.989 16 C -0.165 4.165 17 C 0.155 3.845 18 F -0.104 7.104 19 C -0.016 4.016 20 C 0.045 3.955 21 H 0.027 0.973 22 C -0.183 4.183 23 N -0.320 5.320 24 C -0.381 4.381 25 H 0.090 0.910 26 C -0.231 4.231 27 N -0.567 5.567 28 Si 0.785 3.215 29 H -0.221 1.221 30 H -0.196 1.196 31 H -0.225 1.225 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.182 0.818 38 H 0.208 0.792 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.170 -4.904 -16.710 17.701 hybrid contribution -1.144 0.321 1.534 1.940 sum -4.314 -4.583 -15.176 16.429 Atomic orbital electron populations 1.21767 0.98576 0.97597 0.99936 1.20947 0.91881 0.97015 0.83738 0.88662 1.22748 1.01171 0.78755 1.00342 1.47986 1.52415 1.10839 1.20121 1.18163 0.77929 0.85662 0.83422 1.90757 1.55768 1.18448 1.80227 1.19607 0.93693 1.06753 0.98276 1.20430 1.00215 0.88634 0.88815 1.19845 0.90530 1.07404 0.98976 1.74934 1.26052 1.09099 0.99919 1.81571 0.84874 1.15224 1.16721 1.47655 1.10623 1.43269 1.17836 0.67821 1.18903 0.95222 0.95740 0.89017 1.19604 1.01471 1.02106 0.93279 1.17003 0.84097 0.93492 0.89884 1.91583 1.63027 1.80664 1.75119 1.22195 0.99096 0.96224 0.84105 1.20898 0.95665 0.85191 0.93735 0.97273 1.21660 1.00438 0.99752 0.96499 1.44309 1.62774 1.04260 1.20609 1.19363 1.09922 0.95105 1.13688 0.91033 1.25857 0.98069 0.99394 0.99794 1.69986 1.34524 1.11081 1.41094 0.85465 0.78572 0.77307 0.80201 1.22107 1.19593 1.22512 0.94427 0.93820 0.96420 0.90673 0.89188 0.81778 0.79226 0.90397 0.89668 0.93465 0.91149 0.92290 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.92 71.98 0.64 -4.49 16 2 C 0.17 7.34 2.35 45.18 0.11 7.45 16 3 H 0.10 4.71 5.83 -2.39 -0.01 4.70 16 4 C 0.09 3.17 5.14 86.57 0.45 3.62 16 5 N -0.58 -19.95 2.59 -820.85 -2.13 -22.08 16 6 C 0.56 19.02 6.86 86.71 0.60 19.61 16 7 O -0.57 -22.76 16.23 -3.98 -0.06 -22.82 16 8 C -0.18 -4.80 4.63 -20.09 -0.09 -4.89 16 9 C 0.04 0.98 7.78 22.80 0.18 1.15 16 10 C -0.04 -0.98 7.26 39.56 0.29 -0.70 16 11 N -0.22 -5.26 12.40 -52.19 -0.65 -5.90 16 12 N 0.00 -0.03 13.82 37.02 0.51 0.48 16 13 N -0.47 -6.24 7.54 -51.47 -0.39 -6.63 16 14 H 0.47 2.06 8.96 -213.23 -1.91 0.15 16 15 C 0.14 2.37 7.34 39.13 0.29 2.66 16 16 C -0.14 -2.32 9.97 22.11 0.22 -2.10 16 17 C 0.18 4.37 7.21 22.42 0.16 4.53 16 18 F -0.13 -3.61 16.59 44.97 0.75 -2.86 16 19 C 0.11 3.73 5.91 86.42 0.51 4.24 16 20 C 0.15 6.03 3.22 45.03 0.15 6.17 16 21 H 0.01 0.42 7.39 -2.39 -0.02 0.40 16 22 C -0.13 -4.37 8.01 71.98 0.58 -3.80 16 23 N -0.60 -27.07 2.69 -649.88 -1.75 -28.82 16 24 C -0.25 -12.41 8.41 84.03 0.71 -11.70 16 25 H 0.07 3.45 6.41 -2.91 -0.02 3.44 16 26 C -0.04 -1.80 5.32 84.86 0.45 -1.35 16 27 N -0.92 -49.34 9.61 21.65 0.21 -49.13 16 28 Si 0.95 42.37 29.56 68.60 2.03 44.39 16 29 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 30 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 31 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 32 H 0.04 1.85 7.31 -2.39 -0.02 1.83 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 0.73 7.01 -2.38 -0.02 0.72 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.09 2.69 5.29 -2.39 -0.01 2.68 16 37 H 0.16 3.47 7.74 -2.91 -0.02 3.45 16 38 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 40 H 0.08 2.93 7.00 -2.39 -0.02 2.91 16 41 H 0.05 1.80 7.71 -2.38 -0.02 1.78 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.06 2.00 7.35 -2.39 -0.02 1.98 16 44 H 0.25 13.13 8.31 -92.71 -0.77 12.36 16 Total: -1.00 -65.39 357.57 2.90 -62.49 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.83 Total: 10.47 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 5.22 Total: 20.41 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -4.19 Total: -112.08 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.06 Total: -22.82 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.75 Total: -2.86 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -65.39 2.90 -62.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880457634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.002 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds