Wall clock time and date at job start Wed Apr 1 2020 05:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21309 * 120.00360 * 2 1 4 4 C 1.46755 * 119.99991 * 180.02562 * 2 1 3 5 5 C 1.40132 * 120.09305 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.90461 * 179.72677 * 5 4 2 7 7 C 1.39346 * 120.09351 * 0.02762 * 6 5 4 8 8 N 1.38885 * 119.89904 * 179.97438 * 7 6 5 9 9 C 1.46897 * 111.00091 * 299.99135 * 8 7 6 10 10 C 1.53237 * 109.34100 * 187.25864 * 9 8 7 11 11 H 1.09004 * 109.63052 * 65.88463 * 10 9 8 12 12 C 1.53001 * 109.62891 * 186.46466 * 10 9 8 13 13 N 1.47087 * 108.52252 * 306.17373 * 10 9 8 14 14 C 1.36938 * 120.88187 * 231.16062 * 13 10 9 15 15 H 1.08001 * 119.99616 * 125.20574 * 14 13 10 16 16 C 1.38812 * 120.00160 * 305.21039 * 14 13 10 17 17 N 1.31624 * 119.99744 * 341.97441 * 16 14 13 18 18 Si 1.86795 * 120.00229 * 161.98275 * 16 14 13 19 19 H 1.48498 * 109.47293 * 89.99594 * 18 16 14 20 20 H 1.48492 * 109.47083 * 209.99828 * 18 16 14 21 21 H 1.48502 * 109.46763 * 329.99757 * 18 16 14 22 22 C 1.47083 * 118.23431 * 51.18390 * 13 10 9 23 23 H 1.08997 * 109.62798 * 68.52729 * 22 13 10 24 24 C 1.52993 * 109.62557 * 188.90940 * 22 13 10 25 25 C 1.46898 * 111.00692 * 64.30251 * 8 7 6 26 26 C 1.39293 * 120.18726 * 359.97438 * 7 6 5 27 27 N 1.48012 * 119.94428 * 179.97438 * 26 7 6 28 28 O 1.21805 * 119.99799 * 179.97438 * 27 26 7 29 29 O 1.21804 * 120.00544 * 359.97438 * 27 26 7 30 30 C 1.36554 * 120.10331 * 359.95513 * 26 7 6 31 31 H 1.09000 * 109.47504 * 269.99818 * 1 2 3 32 32 H 1.09005 * 109.47180 * 29.99801 * 1 2 3 33 33 H 1.09002 * 109.47585 * 149.99942 * 1 2 3 34 34 H 1.08003 * 120.04715 * 359.71169 * 5 4 2 35 35 H 1.08000 * 119.95816 * 180.02562 * 6 5 4 36 36 H 1.08993 * 109.49933 * 307.22116 * 9 8 7 37 37 H 1.09000 * 109.49214 * 67.30339 * 9 8 7 38 38 H 1.08994 * 109.47409 * 60.00321 * 12 10 9 39 39 H 1.09004 * 109.47208 * 179.97438 * 12 10 9 40 40 H 1.09001 * 109.47458 * 299.99780 * 12 10 9 41 41 H 0.96998 * 119.99873 * 185.19359 * 17 16 14 42 42 H 1.09004 * 109.47124 * 59.45373 * 24 22 13 43 43 H 1.09001 * 109.47375 * 179.45826 * 24 22 13 44 44 H 1.09006 * 109.47614 * 299.45599 * 24 22 13 45 45 H 1.08997 * 109.48924 * 292.70399 * 25 8 7 46 46 H 1.09005 * 109.49169 * 52.78109 * 25 8 7 47 47 H 1.07993 * 120.05275 * 180.02562 * 30 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2407 -1.2709 -0.0006 5 6 1.5420 -2.4856 -0.0006 6 6 2.2285 -3.6657 -0.0067 7 6 3.6219 -3.6634 -0.0125 8 7 4.3162 -4.8663 -0.0182 9 6 3.9906 -5.6677 1.1690 10 6 4.9056 -6.8960 1.2188 11 1 5.9364 -6.5785 1.3762 12 6 4.4676 -7.8173 2.3590 13 7 4.7988 -7.6104 -0.0625 14 6 4.5405 -8.9548 -0.0982 15 1 3.7037 -9.3288 -0.6693 16 6 5.3543 -9.8366 0.5997 17 7 6.5508 -9.4559 0.9946 18 14 4.7515 -11.5637 0.9781 19 1 5.1350 -12.4756 -0.1293 20 1 5.3667 -12.0363 2.2442 21 1 3.2733 -11.5519 1.1202 22 6 4.9772 -6.8427 -1.3043 23 1 6.0149 -6.5201 -1.3894 24 6 4.6104 -7.7161 -2.5056 25 6 4.0594 -5.6166 -1.2547 26 6 4.3204 -2.4582 -0.0124 27 7 5.8005 -2.4621 -0.0179 28 8 6.4122 -1.4087 -0.0184 29 8 6.4068 -3.5184 -0.0220 30 6 3.6416 -1.2733 -0.0077 31 1 -0.3634 0.0000 1.0276 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5138 34 1 0.4620 -2.4883 0.0046 35 1 1.6909 -4.6024 -0.0072 36 1 4.1396 -5.0666 2.0659 37 1 2.9509 -5.9907 1.1158 38 1 3.4395 -8.1385 2.1922 39 1 5.1197 -8.6901 2.3918 40 1 4.5313 -7.2800 3.3053 41 1 7.1484 -10.0937 1.4152 42 1 3.5733 -8.0396 -2.4165 43 1 4.7343 -7.1418 -3.4237 44 1 5.2623 -8.5894 -2.5326 45 1 3.0188 -5.9402 -1.2741 46 1 4.2584 -4.9783 -2.1155 47 1 4.1839 -0.3394 -0.0081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882519503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:22 Heat of formation + Delta-G solvation = 40.299992 kcal Electronic energy + Delta-G solvation = -31966.246717 eV Core-core repulsion = 27733.314381 eV Total energy + Delta-G solvation = -4232.932336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.168 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.97480 -40.58351 -39.51143 -37.86368 -36.13708 -35.10285 -32.92842 -32.73230 -31.74823 -30.90213 -29.54232 -27.64899 -26.33717 -26.07114 -25.39292 -23.99749 -22.75836 -21.95954 -20.59131 -20.39598 -19.17851 -18.56222 -18.18863 -17.16203 -17.12837 -16.55087 -16.20141 -15.92868 -15.49049 -15.12596 -14.91356 -14.82106 -14.55580 -14.36638 -14.02802 -13.36652 -13.13222 -12.98164 -12.91274 -12.86129 -12.55245 -12.13115 -12.10147 -11.66725 -11.44840 -11.28478 -11.14911 -10.99145 -10.87224 -10.81046 -10.66916 -10.54956 -10.51153 -10.28408 -10.26571 -10.02856 -9.98371 -9.83431 -9.56949 -9.27489 -8.34246 -8.17045 -6.31640 -5.79478 -3.58135 -0.21900 0.18338 1.35590 1.61494 1.90228 3.06656 3.27526 3.36942 3.38187 3.46813 3.63390 4.18681 4.26834 4.37645 4.48199 4.54736 4.66285 4.86012 4.91555 5.13318 5.20048 5.21759 5.23581 5.41114 5.54219 5.58614 5.60601 5.68379 5.78232 5.86874 5.97893 6.03290 6.17678 6.34751 6.37738 6.50946 6.57405 6.65361 6.72866 6.86287 7.00958 7.02451 7.12472 7.29155 7.34941 7.53036 7.64376 7.86346 8.02577 8.60098 9.17230 9.69070 10.50114 11.15273 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003139 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.419102 B = 8916.687114 C = 9514.240590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.400 3.600 3 O -0.452 6.452 4 C -0.190 4.190 5 C -0.018 4.018 6 C -0.167 4.167 7 C 0.210 3.790 8 N -0.500 5.500 9 C 0.050 3.950 10 C 0.202 3.798 11 H 0.046 0.954 12 C -0.143 4.143 13 N -0.577 5.577 14 C -0.270 4.270 15 H 0.051 0.949 16 C 0.040 3.960 17 N -0.871 5.871 18 Si 0.883 3.117 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.174 3.826 23 H 0.042 0.958 24 C -0.129 4.129 25 C 0.058 3.942 26 C -0.043 4.043 27 N 0.024 4.976 28 O -0.208 6.208 29 O -0.073 6.073 30 C 0.002 3.998 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.023 0.977 41 H 0.257 0.743 42 H 0.048 0.952 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 13.249 -1.819 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.277 3.723 3 O -0.327 6.327 4 C -0.192 4.192 5 C -0.037 4.037 6 C -0.188 4.188 7 C 0.112 3.888 8 N -0.221 5.221 9 C -0.076 4.076 10 C 0.095 3.905 11 H 0.064 0.936 12 C -0.201 4.201 13 N -0.301 5.301 14 C -0.400 4.400 15 H 0.068 0.932 16 C -0.163 4.163 17 N -0.510 5.510 18 Si 0.711 3.289 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.200 1.200 22 C 0.067 3.933 23 H 0.060 0.940 24 C -0.187 4.187 25 C -0.068 4.068 26 C -0.127 4.127 27 N 0.547 4.453 28 O -0.407 6.407 29 O -0.309 6.309 30 C -0.018 4.018 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.113 0.887 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.291 13.959 -1.650 19.345 hybrid contribution -0.714 -1.150 0.268 1.380 sum -14.005 12.809 -1.382 19.029 Atomic orbital electron populations 1.22237 0.92964 1.05274 1.05135 1.22278 0.91845 0.86968 0.71171 1.90599 1.72045 1.34028 1.36074 1.20434 0.92810 0.95881 1.10038 1.21496 1.01078 0.90870 0.90277 1.21728 0.93658 1.00059 1.03365 1.19225 0.90544 0.91870 0.87127 1.59614 1.54916 1.02266 1.05292 1.23058 0.99511 0.96044 0.89032 1.20308 0.95319 0.87613 0.87239 0.93610 1.21979 1.01970 1.01634 0.94477 1.43996 1.83552 1.04503 0.98088 1.18562 1.08522 0.81678 1.31215 0.93187 1.25630 0.94479 0.97156 0.98994 1.70050 1.05599 1.34285 1.41096 0.86655 0.78985 0.85325 0.77942 1.20956 1.21316 1.20019 1.20536 0.95501 0.88622 0.88608 0.94000 1.21681 1.01707 1.00092 0.95178 1.22846 0.99469 0.96267 0.88253 1.20900 0.81177 0.95059 1.15595 1.43350 1.02652 1.00771 0.98540 1.94515 1.68284 1.21437 1.56512 1.94722 1.68245 1.19451 1.48445 1.20947 0.93801 0.97835 0.89179 0.88069 0.88972 0.89348 0.83387 0.83137 0.92163 0.94503 0.93902 0.88665 0.95781 0.93263 0.93335 0.94659 0.91200 0.94464 0.92111 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.90 9.74 36.00 0.35 -0.55 16 2 C 0.40 3.53 7.21 -30.87 -0.22 3.31 16 3 O -0.45 -5.66 17.08 5.53 0.09 -5.57 16 4 C -0.19 -1.83 5.87 -105.05 -0.62 -2.44 16 5 C -0.02 -0.14 9.31 -39.49 -0.37 -0.51 16 6 C -0.17 -1.75 8.63 -39.79 -0.34 -2.09 16 7 C 0.21 2.96 4.64 -83.86 -0.39 2.57 16 8 N -0.50 -8.40 2.44 -170.82 -0.42 -8.82 16 9 C 0.05 0.89 4.53 -3.70 -0.02 0.87 16 10 C 0.20 4.37 3.17 -67.49 -0.21 4.16 16 11 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 12 C -0.14 -3.03 8.11 37.16 0.30 -2.73 16 13 N -0.58 -13.22 2.80 -157.01 -0.44 -13.66 16 14 C -0.27 -6.68 6.82 -15.06 -0.10 -6.78 16 15 H 0.05 1.26 7.23 -52.49 -0.38 0.88 16 16 C 0.04 1.03 3.28 -17.43 -0.06 0.97 16 17 N -0.87 -23.68 11.98 55.49 0.66 -23.02 16 18 Si 0.88 19.96 29.59 -169.99 -5.03 14.93 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.17 3.53 3.65 -67.50 -0.25 3.28 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 C -0.13 -2.37 8.21 37.15 0.31 -2.06 16 25 C 0.06 0.98 4.60 -3.71 -0.02 0.96 16 26 C -0.04 -0.63 6.83 -80.17 -0.55 -1.18 16 27 N 0.02 0.42 4.45 33.86 0.15 0.57 16 28 O -0.21 -3.73 18.42 -29.46 -0.54 -4.27 16 29 O -0.07 -1.44 17.09 -29.46 -0.50 -1.95 16 30 C 0.00 0.02 9.05 -39.49 -0.36 -0.33 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.22 6.46 -51.93 -0.34 -0.12 16 34 H 0.15 0.56 6.35 -52.48 -0.33 0.23 16 35 H 0.15 1.44 7.13 -52.49 -0.37 1.07 16 36 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 37 H 0.04 0.61 7.36 -51.93 -0.38 0.23 16 38 H 0.04 0.89 7.97 -51.93 -0.41 0.47 16 39 H 0.09 2.31 4.66 -51.93 -0.24 2.07 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 42 H 0.05 0.87 7.61 -51.93 -0.39 0.48 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 45 H 0.04 0.59 7.58 -51.93 -0.39 0.20 16 46 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.16 2.05 7.16 -52.49 -0.38 1.67 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -30.13 379.35 -9.38 -39.51 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.53 Total: -0.88 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.54 Total: -2.57 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -0.04 Total: -44.93 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.95 Total: -11.79 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.13 -9.38 -39.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882519503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.814 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds